RNA–Protein interactions for RNA: ENST00000641247.1

PHGDH-212, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 710 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-212ENST00000641247 TEFQ10587 303 aa13.16□□□□□ -0.3
PHGDH-212ENST00000641247 AMER1Q5JTC6 1135 aaPredicted RBP13.16□□□□□ -0.3
PHGDH-212ENST00000641247 GNAT3A8MTJ3 354 aa13.15□□□□□ -0.3
PHGDH-212ENST00000641247 CRY2Q49AN0 593 aa13.15□□□□□ -0.3
PHGDH-212ENST00000641247 NUTM1Q86Y26 1132 aa13.15□□□□□ -0.3
PHGDH-212ENST00000641247 LARGE2Q8N3Y3 721 aa13.15□□□□□ -0.3
PHGDH-212ENST00000641247 PGAP2Q9UHJ9 254 aa13.15□□□□□ -0.3
PHGDH-212ENST00000641247 ABCC12Q96J65 1359 aa13.15□□□□□ -0.3
PHGDH-212ENST00000641247 BTBD11A6QL63 1104 aa13.14□□□□□ -0.31
PHGDH-212ENST00000641247 TCERG1O14776 1098 aaKnown RBP13.14□□□□□ -0.31
PHGDH-212ENST00000641247 CA12O43570 354 aa13.14□□□□□ -0.31
PHGDH-212ENST00000641247 DIAPH1O60610 1272 aaKnown RBP13.14□□□□□ -0.31
PHGDH-212ENST00000641247 NPM2Q86SE8 214 aaKnown RBP13.14□□□□□ -0.31
PHGDH-212ENST00000641247 HHIPL1Q96JK4 782 aa13.14□□□□□ -0.31
PHGDH-212ENST00000641247 GPRC5DQ9NZD1 345 aa13.14□□□□□ -0.31
PHGDH-212ENST00000641247 CEMIPQ8WUJ3 1361 aa13.13□□□□□ -0.31
PHGDH-212ENST00000641247 SHTN1A0MZ66 631 aa13.13□□□□□ -0.31
PHGDH-212ENST00000641247 HSPA5P11021 654 aaKnown RBP13.13□□□□□ -0.31
PHGDH-212ENST00000641247 CXCL9Q07325 125 aa13.13□□□□□ -0.31
PHGDH-212ENST00000641247 C3orf67Q6ZVT6 689 aa13.13□□□□□ -0.31
PHGDH-212ENST00000641247 PHACTR3Q96KR7 559 aa13.13□□□□□ -0.31
PHGDH-212ENST00000641247 ZNF408Q9H9D4 720 aa13.13□□□□□ -0.31
PHGDH-212ENST00000641247 ADARB2Q9NS39 739 aaKnown RBP13.13□□□□□ -0.31
PHGDH-212ENST00000641247 TNRC18O15417 2968 aaPredicted RBP13.13□□□□□ -0.31
PHGDH-212ENST00000641247 FAM155AB1AL88 458 aaPredicted RBP13.12□□□□□ -0.31
PHGDH-212ENST00000641247 HOXA10P31260 410 aaPredicted RBP13.12□□□□□ -0.31
PHGDH-212ENST00000641247 KNSTRNQ9Y448 316 aa13.12□□□□□ -0.31
PHGDH-212ENST00000641247 CASP8AP2Q9UKL3 1982 aa13.12□□□□□ -0.31
PHGDH-212ENST00000641247 GMPSP49915 693 aaPredicted RBP13.11□□□□□ -0.31
PHGDH-212ENST00000641247 AOC3Q16853 763 aa13.11□□□□□ -0.31
PHGDH-212ENST00000641247 CC2D2BQ6DHV5 1058 aa13.11□□□□□ -0.31
PHGDH-212ENST00000641247 TRPM4Q8TD43 1214 aa13.11□□□□□ -0.31
PHGDH-212ENST00000641247 ZNF652Q9Y2D9 606 aa13.11□□□□□ -0.31
PHGDH-212ENST00000641247 BCORQ6W2J9 1755 aa13.11□□□□□ -0.31
PHGDH-212ENST00000641247 NPC1L1Q9UHC9 1359 aa13.1□□□□□ -0.31
PHGDH-212ENST00000641247 GTF2E1P29083 439 aaPredicted RBP13.1□□□□□ -0.31
PHGDH-212ENST00000641247 PRPF38BQ5VTL8 546 aaKnown RBP13.1□□□□□ -0.31
PHGDH-212ENST00000641247 NIM1KQ8IY84 436 aa13.1□□□□□ -0.31
PHGDH-212ENST00000641247 GAS2L2Q8NHY3 880 aa13.1□□□□□ -0.31
PHGDH-212ENST00000641247 PPIP5K2O43314 1243 aa13.09□□□□□ -0.31
PHGDH-212ENST00000641247 SNRPA1P09661 255 aaKnown RBP13.09□□□□□ -0.31
PHGDH-212ENST00000641247 USP48Q86UV5 1035 aa13.09□□□□□ -0.31
PHGDH-212ENST00000641247 RNF186Q9NXI6 227 aa13.09□□□□□ -0.31
PHGDH-212ENST00000641247 UBN2Q6ZU65 1347 aa13.09□□□□□ -0.31
PHGDH-212ENST00000641247 PPEF1O14829 653 aaPredicted RBP13.08□□□□□ -0.32
PHGDH-212ENST00000641247 RGL2O15211 777 aa13.08□□□□□ -0.32
PHGDH-212ENST00000641247 HUNKP57058 714 aa13.08□□□□□ -0.32
PHGDH-212ENST00000641247 KIF23Q02241 960 aaPredicted RBP13.08□□□□□ -0.32
PHGDH-212ENST00000641247 NOGQ13253 232 aa13.08□□□□□ -0.32
PHGDH-212ENST00000641247 SUSD4Q5VX71 490 aa13.08□□□□□ -0.32
PHGDH-212ENST00000641247 NGEFQ8N5V2 710 aa13.08□□□□□ -0.32
PHGDH-212ENST00000641247 CRAMP1Q96RY5 1269 aa13.08□□□□□ -0.32
PHGDH-212ENST00000641247 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
PHGDH-212ENST00000641247 PER1O15534 1290 aaPredicted RBP13.07□□□□□ -0.32
PHGDH-212ENST00000641247 TRPA1O75762 1119 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 RAD17O75943 681 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 DCTN1Q14203 1278 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 TTLL7Q6ZT98 887 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 CDC37L1Q7L3B6 337 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 MCM10Q7L590 875 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 ZNRF3Q9ULT6 936 aa13.07□□□□□ -0.32
PHGDH-212ENST00000641247 SIPA1L3O60292 1781 aaPredicted RBP13.07□□□□□ -0.32
PHGDH-212ENST00000641247 COL3A1P02461 1466 aaPredicted RBP13.06□□□□□ -0.32
PHGDH-212ENST00000641247 YDJCA8MPS7 323 aa13.06□□□□□ -0.32
PHGDH-212ENST00000641247 EGFRP00533 1210 aa13.06□□□□□ -0.32
PHGDH-212ENST00000641247 GPTP24298 496 aa13.06□□□□□ -0.32
PHGDH-212ENST00000641247 EIF4G2P78344 907 aaKnown RBP eCLIP13.06□□□□□ -0.327e-14■■■■■ 63.8
PHGDH-212ENST00000641247 CC2D1BQ5T0F9 858 aaKnown RBP13.06□□□□□ -0.32
PHGDH-212ENST00000641247 ZC3H15Q8WU90 426 aaKnown RBP13.06□□□□□ -0.32
PHGDH-212ENST00000641247 RPGRQ92834 1020 aaKnown RBP13.06□□□□□ -0.32
PHGDH-212ENST00000641247 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
PHGDH-212ENST00000641247 KIF7Q2M1P5 1343 aa13.06□□□□□ -0.32
PHGDH-212ENST00000641247 RGMBQ6NW40 437 aa13.05□□□□□ -0.32
PHGDH-212ENST00000641247 SAMD7Q7Z3H4 446 aa13.05□□□□□ -0.32
PHGDH-212ENST00000641247 RBM17Q96I25 401 aaKnown RBP13.05□□□□□ -0.32
PHGDH-212ENST00000641247 CSRNP1Q96S65 589 aa13.05□□□□□ -0.32
PHGDH-212ENST00000641247 RTFDC1Q9BY42 306 aaPredicted RBP13.05□□□□□ -0.32
PHGDH-212ENST00000641247 CNOT7Q9UIV1 285 aaKnown RBP13.05□□□□□ -0.32
PHGDH-212ENST00000641247 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
PHGDH-212ENST00000641247 RIC1Q4ADV7 1423 aa13.05□□□□□ -0.32
PHGDH-212ENST00000641247 TRPM7Q96QT4 1865 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 NTSR2O95665 410 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 PRKAR2BP31323 418 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 GRIPAP1Q4V328 841 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 ZNF34Q8IZ26 560 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 NYXQ9GZU5 481 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 RSPH6AQ9H0K4 717 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 SAGE1Q9NXZ1 904 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 HPS5Q9UPZ3 1129 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 ATP6V0A2Q9Y487 856 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 PDE4DIPQ5VU43 2346 aa13.04□□□□□ -0.32
PHGDH-212ENST00000641247 ERVV-1B6SEH8 477 aa13.03□□□□□ -0.32
PHGDH-212ENST00000641247 ADM5C9JUS6 153 aa13.03□□□□□ -0.32
PHGDH-212ENST00000641247 BCL2L13Q9BXK5 485 aa13.03□□□□□ -0.32
PHGDH-212ENST00000641247 KIAA2012Q0VF49 1180 aa13.02□□□□□ -0.33
PHGDH-212ENST00000641247 CNGB1Q14028 1251 aaPredicted RBP13.02□□□□□ -0.33
PHGDH-212ENST00000641247 CTU1Q7Z7A3 348 aaKnown RBP13.02□□□□□ -0.33
PHGDH-212ENST00000641247 MICALL2Q8IY33 904 aa13.02□□□□□ -0.33
PHGDH-212ENST00000641247 VPS33BQ9H267 617 aa13.02□□□□□ -0.33
PHGDH-212ENST00000641247 ZBTB3Q9H5J0 574 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms