RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 ZSWIM6Q9HCJ5 1215 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 PRDM4Q9UKN5 801 aa17.87■□□□□ 0.45
CLN3-253ENST00000636977 ZNF790Q6PG37 636 aa17.86■□□□□ 0.45
CLN3-253ENST00000636977 XAGE3Q8WTP9 111 aa17.86■□□□□ 0.45
CLN3-253ENST00000636977 PHRF1Q9P1Y6 1649 aaKnown RBP17.86■□□□□ 0.45
CLN3-253ENST00000636977 DNM1Q05193 864 aaKnown RBP17.86■□□□□ 0.45
CLN3-253ENST00000636977 CREB3L3Q68CJ9 461 aa17.86■□□□□ 0.45
CLN3-253ENST00000636977 ERC1Q8IUD2 1116 aa17.86■□□□□ 0.45
CLN3-253ENST00000636977 GPATCH3Q96I76 525 aa17.86■□□□□ 0.45
CLN3-253ENST00000636977 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.86■□□□□ 0.45
CLN3-253ENST00000636977 OFD1O75665 1012 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 COPS6Q7L5N1 327 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 NLRP2Q9NX02 1062 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 TPCN1Q9ULQ1 816 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 CYP46A1Q9Y6A2 500 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 SLIT3O75094 1523 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 KCNJ4P48050 445 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 VPS53Q5VIR6 699 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 MYD88Q99836 296 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 PDCL3Q9H2J4 239 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 MTMR6Q9Y217 621 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 UTYO14607 1347 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 HS1BP3Q53T59 392 aa17.85■□□□□ 0.45
CLN3-253ENST00000636977 ERBB3P21860 1342 aa17.84■□□□□ 0.45
CLN3-253ENST00000636977 ZNF589Q86UQ0 364 aaPredicted RBP17.84■□□□□ 0.45
CLN3-253ENST00000636977 TMEM87AQ8NBN3 555 aa17.84■□□□□ 0.45
CLN3-253ENST00000636977 SYAP1Q96A49 352 aaPredicted RBP17.84■□□□□ 0.45
CLN3-253ENST00000636977 ZNF496Q96IT1 587 aaPredicted RBP17.84■□□□□ 0.45
CLN3-253ENST00000636977 NEURL1BA8MQ27 555 aa17.84■□□□□ 0.45
CLN3-253ENST00000636977 KCNB2Q92953 911 aa17.84■□□□□ 0.45
CLN3-253ENST00000636977 ZKSCAN5Q9Y2L8 839 aa17.84■□□□□ 0.45
CLN3-253ENST00000636977 USP16Q9Y5T5 823 aa17.84■□□□□ 0.45
CLN3-253ENST00000636977 VPS37CA5D8V6 355 aaPredicted RBP17.83■□□□□ 0.45
CLN3-253ENST00000636977 SLC27A2O14975 620 aa17.83■□□□□ 0.45
CLN3-253ENST00000636977 DDX58O95786 925 aaKnown RBP17.83■□□□□ 0.45
CLN3-253ENST00000636977 FAM173BQ6P4H8 233 aa17.83■□□□□ 0.45
CLN3-253ENST00000636977 MAP4K1Q92918 833 aa17.83■□□□□ 0.45
CLN3-253ENST00000636977 FSD1Q9BTV5 496 aa17.83■□□□□ 0.45
CLN3-253ENST00000636977 KDM6AO15550 1401 aaPredicted RBP17.83■□□□□ 0.44
CLN3-253ENST00000636977 CABLES1Q8TDN4 633 aa17.83■□□□□ 0.44
CLN3-253ENST00000636977 ZHX1Q9UKY1 873 aaPredicted RBP17.83■□□□□ 0.44
CLN3-253ENST00000636977 SIPA1L3O60292 1781 aaPredicted RBP17.83■□□□□ 0.44
CLN3-253ENST00000636977 GCKRQ14397 625 aa17.82■□□□□ 0.44
CLN3-253ENST00000636977 SLC52A2Q9HAB3 445 aa17.82■□□□□ 0.44
CLN3-253ENST00000636977 HCLS1P14317 486 aaPredicted RBP17.82■□□□□ 0.44
CLN3-253ENST00000636977 R3HCC1Q9Y3T6 440 aaKnown RBP17.82■□□□□ 0.44
CLN3-253ENST00000636977 FERMT3Q86UX7 667 aa17.82■□□□□ 0.44
CLN3-253ENST00000636977 USP25Q9UHP3 1055 aa17.82■□□□□ 0.44
CLN3-253ENST00000636977 C5P01031 1676 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 NPHP3Q7Z494 1330 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 ZNF500O60304 480 aaPredicted RBP17.81■□□□□ 0.44
CLN3-253ENST00000636977 CCDC183Q5T5S1 534 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 GIMAP6Q6P9H5 292 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 RAPGEF4Q8WZA2 1011 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 ZNF830Q96NB3 372 aaPredicted RBP17.81■□□□□ 0.44
CLN3-253ENST00000636977 TM6SF1Q9BZW5 370 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 OVOS2A0A0G2JMS6 1433 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 ZKSCAN1P17029 563 aaPredicted RBP17.81■□□□□ 0.44
CLN3-253ENST00000636977 UBE2HP62256 183 aa17.81■□□□□ 0.44
CLN3-253ENST00000636977 PROSER2Q86WR7 435 aaPredicted RBP17.81■□□□□ 0.44
CLN3-253ENST00000636977 CCDC9Q9Y3X0 531 aaKnown RBP17.81■□□□□ 0.44
CLN3-253ENST00000636977 NPHP4O75161 1426 aaPredicted RBP17.8■□□□□ 0.44
CLN3-253ENST00000636977 ATP5J2-PTCD1G3V325 749 aa17.8■□□□□ 0.44
CLN3-253ENST00000636977 PTCD1O75127 700 aaKnown RBP17.8■□□□□ 0.44
CLN3-253ENST00000636977 LARP1Q6PKG0 1096 aaKnown RBP17.8■□□□□ 0.44
CLN3-253ENST00000636977 PHKG2P15735 406 aa17.8■□□□□ 0.44
CLN3-253ENST00000636977 CHRNA2Q15822 529 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 CCDC39Q9UFE4 941 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 STK3Q13188 491 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 CDC37L1Q7L3B6 337 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 LRP10Q7Z4F1 713 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 METTL22Q9BUU2 404 aaPredicted RBP17.79■□□□□ 0.44
CLN3-253ENST00000636977 PRDM10Q9NQV6 1147 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 CHMP3Q9Y3E7 222 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 COL15A1P39059 1388 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 PHF14O94880 888 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 PTMAP06454 111 aaKnown RBP17.79■□□□□ 0.44
CLN3-253ENST00000636977 TFCP2Q12800 502 aa17.79■□□□□ 0.44
CLN3-253ENST00000636977 AEBP2Q6ZN18 517 aaPredicted RBP17.79■□□□□ 0.44
CLN3-253ENST00000636977 DBNLQ9UJU6 430 aaKnown RBP17.79■□□□□ 0.44
CLN3-253ENST00000636977 TRPM3Q9HCF6 1732 aaPredicted RBP17.78■□□□□ 0.44
CLN3-253ENST00000636977 NEXNQ0ZGT2 675 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 UBE3BQ7Z3V4 1068 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 ZSCAN31Q96LW9 406 aaPredicted RBP17.78■□□□□ 0.44
CLN3-253ENST00000636977 SH2B1Q9NRF2 756 aaPredicted RBP17.78■□□□□ 0.44
CLN3-253ENST00000636977 FAM13BQ9NYF5 915 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 HDAC5Q9UQL6 1122 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-253ENST00000636977 MEGF6O75095 1541 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.78■□□□□ 0.44
CLN3-253ENST00000636977 CCDC129Q6ZRS4 1044 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 ANKRD13DQ6ZTN6 518 aa17.78■□□□□ 0.44
CLN3-253ENST00000636977 SEC62Q99442 399 aaKnown RBP17.78■□□□□ 0.44
CLN3-253ENST00000636977 TOB2Q14106 344 aaPredicted RBP17.77■□□□□ 0.44
CLN3-253ENST00000636977 LARP1BQ659C4 914 aaKnown RBP17.77■□□□□ 0.44
CLN3-253ENST00000636977 CAMTA1Q9Y6Y1 1673 aa17.77■□□□□ 0.44
CLN3-253ENST00000636977 SLFNL1Q499Z3 407 aa17.77■□□□□ 0.44
CLN3-253ENST00000636977 MED23Q9ULK4 1368 aa17.77■□□□□ 0.43
CLN3-253ENST00000636977 CYP27B1O15528 508 aa17.76■□□□□ 0.43
CLN3-253ENST00000636977 RFX5P48382 616 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms