RNA–Protein interactions for RNA: ENST00000625891.2

NRXN1-223, Transcript of neurexin 1, human

TSL 4 BASIC

Gene NRXN1, Length 1,164 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NRXN1-223	ENST00000625891	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.42	□□□□□ -0.74
NRXN1-223	ENST00000625891	ALAS2	P22557	587 aa		10.41	□□□□□ -0.74
NRXN1-223	ENST00000625891	ABCC9	O60706	1549 aa		10.41	□□□□□ -0.74
NRXN1-223	ENST00000625891	L3MBTL2	Q969R5	705 aa		10.4	□□□□□ -0.74
NRXN1-223	ENST00000625891	RBM19	Q9Y4C8	960 aa	Known RBP	10.4	□□□□□ -0.74
NRXN1-223	ENST00000625891	SPDYE3	A6NKU9	549 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	ADARB2-AS1	A8MUL3	147 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	EML1	O00423	815 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	SIN3B	O75182	1162 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	PDE4C	Q08493	712 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	TEAD4	Q15561	434 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	C7orf43	Q8WVR3	580 aa		10.39	□□□□□ -0.75
NRXN1-223	ENST00000625891	NOS2	P35228	1153 aa		10.38	□□□□□ -0.75
NRXN1-223	ENST00000625891	OCLN	Q16625	522 aa		10.38	□□□□□ -0.75
NRXN1-223	ENST00000625891	RSPO4	Q2I0M5	234 aa	Predicted RBP	10.38	□□□□□ -0.75
NRXN1-223	ENST00000625891	ZMYM1	Q5SVZ6	1142 aa		10.38	□□□□□ -0.75
NRXN1-223	ENST00000625891	LRRC69	Q6ZNQ3	347 aa		10.38	□□□□□ -0.75
NRXN1-223	ENST00000625891	TNS4	Q8IZW8	715 aa		10.38	□□□□□ -0.75
NRXN1-223	ENST00000625891	COL9A3	Q14050	684 aa	Predicted RBP	10.37	□□□□□ -0.75
NRXN1-223	ENST00000625891	PRRT3	Q5FWE3	981 aa		10.37	□□□□□ -0.75
NRXN1-223	ENST00000625891	PSMG3-AS1	Q96PY0	264 aa		10.37	□□□□□ -0.75
NRXN1-223	ENST00000625891	LGR5	O75473	907 aa		10.36	□□□□□ -0.75
NRXN1-223	ENST00000625891	PDIA4	P13667	645 aa	Known RBP	10.36	□□□□□ -0.75
NRXN1-223	ENST00000625891	WEE1	P30291	646 aa		10.36	□□□□□ -0.75
NRXN1-223	ENST00000625891	NKAPL	Q5M9Q1	402 aa		10.36	□□□□□ -0.75
NRXN1-223	ENST00000625891	PHLDB3	Q6NSJ2	640 aa		10.36	□□□□□ -0.75
NRXN1-223	ENST00000625891	GPC6	Q9Y625	555 aa	Predicted RBP	10.36	□□□□□ -0.75
NRXN1-223	ENST00000625891	C21orf2	O43822	256 aa		10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891	SFSWAP	Q12872	951 aa	Known RBP	10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891	SLC30A3	Q99726	388 aa		10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891	HINFP	Q9BQA5	517 aa		10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891	PRDM6	Q9NQX0	595 aa		10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891	STARD13	Q9Y3M8	1113 aa		10.35	□□□□□ -0.75
NRXN1-223	ENST00000625891		M0R082	166 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	SSFA2	P28290	1259 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	SLC9A9	Q8IVB4	645 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	ZNF417	Q8TAU3	575 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	TNFRSF25	Q93038	417 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	ZNF587	Q96SQ5	575 aa	Predicted RBP	10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	NEUROD4	Q9HD90	331 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	TPSG1	Q9NRR2	321 aa		10.34	□□□□□ -0.75
NRXN1-223	ENST00000625891	PRMT3	O60678	531 aa		10.33	□□□□□ -0.76
NRXN1-223	ENST00000625891	APBA3	O96018	575 aa		10.33	□□□□□ -0.76
NRXN1-223	ENST00000625891	TBCEL	Q5QJ74	424 aa		10.33	□□□□□ -0.76
NRXN1-223	ENST00000625891	POTEA	Q6S8J7	498 aa		10.33	□□□□□ -0.76
NRXN1-223	ENST00000625891	ZNF232	Q9UNY5	417 aa		10.33	□□□□□ -0.76
NRXN1-223	ENST00000625891	IGFBP4	P22692	258 aa		10.32	□□□□□ -0.76
NRXN1-223	ENST00000625891	ATP2B4	P23634	1241 aa		10.32	□□□□□ -0.76
NRXN1-223	ENST00000625891	MICALL1	Q8N3F8	863 aa		10.32	□□□□□ -0.76
NRXN1-223	ENST00000625891	PRIMPOL	Q96LW4	560 aa		10.32	□□□□□ -0.76
NRXN1-223	ENST00000625891	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.32	□□□□□ -0.76
NRXN1-223	ENST00000625891	SERTM1	A2A2V5	107 aa		10.31	□□□□□ -0.76
NRXN1-223	ENST00000625891	FAM229A	H3BQW9	127 aa		10.31	□□□□□ -0.76
NRXN1-223	ENST00000625891	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	10.31	□□□□□ -0.76
NRXN1-223	ENST00000625891	SH3PXD2A	Q5TCZ1	1133 aa		10.31	□□□□□ -0.76
NRXN1-223	ENST00000625891	FOXD4L3	Q6VB84	417 aa	Predicted RBP	10.31	□□□□□ -0.76
NRXN1-223	ENST00000625891	C8orf86	Q6ZUL3	223 aa		10.31	□□□□□ -0.76
NRXN1-223	ENST00000625891	ATAD2	Q6PL18	1390 aa		10.3	□□□□□ -0.76
NRXN1-223	ENST00000625891	BRD1	O95696	1058 aa		10.3	□□□□□ -0.76
NRXN1-223	ENST00000625891	ALB	P02768	609 aa		10.3	□□□□□ -0.76
NRXN1-223	ENST00000625891	SPEM2	Q0P670	501 aa		10.3	□□□□□ -0.76
NRXN1-223	ENST00000625891	GAS2L2	Q8NHY3	880 aa		10.3	□□□□□ -0.76
NRXN1-223	ENST00000625891	SCG3	Q8WXD2	468 aa	Known RBP	10.3	□□□□□ -0.76
NRXN1-223	ENST00000625891	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	10.29	□□□□□ -0.76
NRXN1-223	ENST00000625891	ADH7	P40394	386 aa		10.29	□□□□□ -0.76
NRXN1-223	ENST00000625891	TRIM28	Q13263	835 aa	Known RBP	10.29	□□□□□ -0.76
NRXN1-223	ENST00000625891	FKBP5	Q13451	457 aa	Predicted RBP	10.29	□□□□□ -0.76
NRXN1-223	ENST00000625891	RHPN1	Q8TCX5	695 aa		10.29	□□□□□ -0.76
NRXN1-223	ENST00000625891	KRTAP9-2	Q9BYQ4	174 aa		10.29	□□□□□ -0.76
NRXN1-223	ENST00000625891	DYRK3	O43781	588 aa		10.28	□□□□□ -0.76
NRXN1-223	ENST00000625891	NID1	P14543	1247 aa		10.28	□□□□□ -0.76
NRXN1-223	ENST00000625891	STAG2	Q8N3U4	1231 aa		10.28	□□□□□ -0.76
NRXN1-223	ENST00000625891	NACC1	Q96RE7	527 aa		10.28	□□□□□ -0.76
NRXN1-223	ENST00000625891	FOXO3	O43524	673 aa		10.27	□□□□□ -0.77
NRXN1-223	ENST00000625891	PSMA6	P60900	246 aa	Known RBP	10.27	□□□□□ -0.77
NRXN1-223	ENST00000625891	NEUROD1	Q13562	356 aa		10.27	□□□□□ -0.77
NRXN1-223	ENST00000625891	C1orf53	Q5VUE5	145 aa		10.27	□□□□□ -0.77
NRXN1-223	ENST00000625891	C20orf204	Q6ZNR8	217 aa		10.27	□□□□□ -0.77
NRXN1-223	ENST00000625891	C2orf49	Q9BVC5	232 aa	Predicted RBP	10.27	□□□□□ -0.77
NRXN1-223	ENST00000625891	PPP1R12B	O60237	982 aa	Predicted RBP	10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	SCNN1A	P37088	669 aa		10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	KCNQ4	P56696	695 aa		10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	GRIK4	Q16099	956 aa		10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	B4GALNT3	Q6L9W6	998 aa		10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	RAB44	Q7Z6P3	723 aa	Predicted RBP	10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	BRD7	Q9NPI1	651 aa		10.26	□□□□□ -0.77
NRXN1-223	ENST00000625891	HIRA	P54198	1017 aa	Predicted RBP	10.25	□□□□□ -0.77
NRXN1-223	ENST00000625891	CEP63	Q96MT8	703 aa		10.25	□□□□□ -0.77
NRXN1-223	ENST00000625891	ANKIB1	Q9P2G1	1089 aa		10.25	□□□□□ -0.77
NRXN1-223	ENST00000625891	SCO2	A0A1W2PP80	73 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	CAPN12	Q6ZSI9	719 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	TXNDC2	Q86VQ3	553 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	COL26A1	Q96A83	441 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	HSH2D	Q96JZ2	352 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	KCNH4	Q9UQ05	1017 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	HCN4	Q9Y3Q4	1203 aa		10.24	□□□□□ -0.77
NRXN1-223	ENST00000625891	KRTAP9-6	A0A140TA67	174 aa		10.23	□□□□□ -0.77
NRXN1-223	ENST00000625891	KCNA1	Q09470	495 aa		10.23	□□□□□ -0.77
NRXN1-223	ENST00000625891	TYRO3	Q06418	890 aa		10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms