RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 RUFY3Q7L099 469 aa12.73□□□□□ -0.37
CDH1-214ENST00000621016 CABLES1Q8TDN4 633 aa12.73□□□□□ -0.37
CDH1-214ENST00000621016 TSPY26PQ9H489 355 aa12.73□□□□□ -0.37
CDH1-214ENST00000621016 TTC12Q9H892 705 aaPredicted RBP12.73□□□□□ -0.37
CDH1-214ENST00000621016 SALL3Q9BXA9 1300 aa12.73□□□□□ -0.37
CDH1-214ENST00000621016 DIP2BQ9P265 1576 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 HSPA4P34932 840 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 KIAA2012Q0VF49 1180 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 G3BP1Q13283 466 aaKnown RBP eCLIP12.72□□□□□ -0.37
CDH1-214ENST00000621016 CAMK4Q16566 473 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 PLEKHO1Q53GL0 409 aaPredicted RBP12.72□□□□□ -0.37
CDH1-214ENST00000621016 ST7Q9NRC1 585 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.72□□□□□ -0.37
CDH1-214ENST00000621016 ATP5J2-PTCD1G3V325 749 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 PTCD1O75127 700 aaKnown RBP12.72□□□□□ -0.37
CDH1-214ENST00000621016 DNM1Q05193 864 aaKnown RBP12.72□□□□□ -0.37
CDH1-214ENST00000621016 FSD1Q9BTV5 496 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.72□□□□□ -0.37
CDH1-214ENST00000621016 PEAK1Q9H792 1746 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 GTF2A1P52655 376 aaPredicted RBP12.72□□□□□ -0.37
CDH1-214ENST00000621016 CLEC17AQ6ZS10 378 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 IP6K1Q92551 441 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 PDRG1Q9NUG6 133 aa12.72□□□□□ -0.37
CDH1-214ENST00000621016 MBD3O95983 291 aa12.71□□□□□ -0.37
CDH1-214ENST00000621016 GCP02774 474 aa12.71□□□□□ -0.37
CDH1-214ENST00000621016 GJB2P29033 226 aa12.71□□□□□ -0.37
CDH1-214ENST00000621016 KDRP35968 1356 aa12.71□□□□□ -0.37
CDH1-214ENST00000621016 WDR33Q9C0J8 1336 aaKnown RBP12.71□□□□□ -0.37
CDH1-214ENST00000621016 BICC1Q9H694 974 aaKnown RBP12.71□□□□□ -0.37
CDH1-214ENST00000621016 TFIP11Q9UBB9 837 aaKnown RBP12.71□□□□□ -0.37
CDH1-214ENST00000621016 DBF4Q9UBU7 674 aaPredicted RBP12.71□□□□□ -0.37
CDH1-214ENST00000621016 STAP2Q9UGK3 403 aa12.71□□□□□ -0.37
CDH1-214ENST00000621016 AXIN2Q9Y2T1 843 aa12.71□□□□□ -0.37
CDH1-214ENST00000621016 TECPR2O15040 1411 aa12.71□□□□□ -0.38
CDH1-214ENST00000621016 HTATSF1O43719 755 aaKnown RBP12.71□□□□□ -0.38
CDH1-214ENST00000621016 STX6O43752 255 aa12.71□□□□□ -0.38
CDH1-214ENST00000621016 ANKRD24Q8TF21 1146 aa12.71□□□□□ -0.38
CDH1-214ENST00000621016 LIMCH1Q9UPQ0 1083 aa12.71□□□□□ -0.38
CDH1-214ENST00000621016 RAB11FIP3O75154 756 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 SLFN14P0C7P3 912 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 CEBPZQ03701 1054 aaKnown RBP12.7□□□□□ -0.38
CDH1-214ENST00000621016 CHRNA2Q15822 529 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 SPC24Q8NBT2 197 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 NFATC2IPQ8NCF5 419 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 LRRC2Q9BYS8 371 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 ECHDC1Q9NTX5 307 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 TAF6LQ9Y6J9 622 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 GLRX3O76003 335 aaKnown RBP12.7□□□□□ -0.38
CDH1-214ENST00000621016 SUCLG2Q96I99 432 aa12.7□□□□□ -0.38
CDH1-214ENST00000621016 LSG1Q9H089 658 aaKnown RBP12.7□□□□□ -0.38
CDH1-214ENST00000621016 CUL4AQ13619 759 aa12.69□□□□□ -0.38
CDH1-214ENST00000621016 SYAP1Q96A49 352 aaPredicted RBP12.69□□□□□ -0.38
CDH1-214ENST00000621016 EAF2Q96CJ1 260 aaPredicted RBP12.69□□□□□ -0.38
CDH1-214ENST00000621016 FAM212AQ96EL1 285 aa12.69□□□□□ -0.38
CDH1-214ENST00000621016 RAD50Q92878 1312 aa12.69□□□□□ -0.38
CDH1-214ENST00000621016 NPHP1O15259 732 aa12.69□□□□□ -0.38
CDH1-214ENST00000621016 ZKSCAN1P17029 563 aaPredicted RBP12.69□□□□□ -0.38
CDH1-214ENST00000621016 ANAPC15P60006 121 aa12.69□□□□□ -0.38
CDH1-214ENST00000621016 MYD88Q99836 296 aa12.69□□□□□ -0.38
CDH1-214ENST00000621016 NMIQ13287 307 aaPredicted RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 SLFNL1Q499Z3 407 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 C10orf67Q8IYJ2 551 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 GPATCH3Q96I76 525 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 FEZ2Q9UHY8 353 aaPredicted RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 CYP46A1Q9Y6A2 500 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 AGLP35573 1532 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 RNMTO43148 476 aaKnown RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 ZSCAN22P10073 491 aaPredicted RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 DDX11Q96FC9 970 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 CCDC85AQ96PX6 553 aaPredicted RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 RBM8AQ9Y5S9 174 aaKnown RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 C3P01024 1663 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 ITSN1Q15811 1721 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 GIGYF1O75420 1035 aaPredicted RBP12.68□□□□□ -0.38
CDH1-214ENST00000621016 GTF2F1P35269 517 aaKnown RBP eCLIP12.68□□□□□ -0.38
CDH1-214ENST00000621016 COPS6Q7L5N1 327 aa12.68□□□□□ -0.38
CDH1-214ENST00000621016 RIOK3O14730 519 aaKnown RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 POLA2Q14181 598 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 DNAJC21Q5F1R6 531 aaKnown RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 CT47A1Q5JQC4 288 aaPredicted RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 LARP1BQ659C4 914 aaKnown RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 RUFY2Q8WXA3 655 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 FBXW7Q969H0 707 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 HSP90AB4PQ58FF6 505 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 AKAP4Q5JQC9 854 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 KSR2Q6VAB6 950 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 CCDC129Q6ZRS4 1044 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 ANKLE2Q86XL3 938 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 CKAP2LQ8IYA6 745 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 XAGE3Q8WTP9 111 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 NEUROD6Q96NK8 337 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 CCDC39Q9UFE4 941 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 GRM8O00222 908 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 HSP90B1P14625 803 aaKnown RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 NOLC1Q14978 699 aaKnown RBP eCLIP12.67□□□□□ -0.38
CDH1-214ENST00000621016 SART3Q15020 963 aaKnown RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 ME3Q16798 604 aa12.67□□□□□ -0.38
CDH1-214ENST00000621016 INTS4Q96HW7 963 aaKnown RBP12.67□□□□□ -0.38
CDH1-214ENST00000621016 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 153 ms