RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 DDNO94850 711 aaPredicted RBP15.56■□□□□ 0.08
UPF3B-204ENST00000619445 IARSP41252 1262 aaKnown RBP15.56■□□□□ 0.08
UPF3B-204ENST00000619445 NLRP3Q96P20 1036 aa15.56■□□□□ 0.08
UPF3B-204ENST00000619445 CHL1O00533 1208 aa15.55■□□□□ 0.08
UPF3B-204ENST00000619445 NTSR2O95665 410 aa15.55■□□□□ 0.08
UPF3B-204ENST00000619445 SUSD4Q5VX71 490 aa15.55■□□□□ 0.08
UPF3B-204ENST00000619445 LDHDQ86WU2 507 aa15.55■□□□□ 0.08
UPF3B-204ENST00000619445 SYNE4Q8N205 404 aa15.55■□□□□ 0.08
UPF3B-204ENST00000619445 UTP14AQ9BVJ6 771 aaKnown RBP15.55■□□□□ 0.08
UPF3B-204ENST00000619445 ZNF277Q9NRM2 450 aaPredicted RBP15.55■□□□□ 0.08
UPF3B-204ENST00000619445 PDIA6Q15084 440 aa15.54■□□□□ 0.08
UPF3B-204ENST00000619445 SLC10A5Q5PT55 438 aa15.54■□□□□ 0.08
UPF3B-204ENST00000619445 LRP10Q7Z4F1 713 aa15.54■□□□□ 0.08
UPF3B-204ENST00000619445 PNMA8AQ86V59 439 aaPredicted RBP15.54■□□□□ 0.08
UPF3B-204ENST00000619445 VPS33BQ9H267 617 aa15.54■□□□□ 0.08
UPF3B-204ENST00000619445 DDX21Q9NR30 783 aaKnown RBP eCLIP15.54■□□□□ 0.08
UPF3B-204ENST00000619445 ANKRD36CQ5JPF3 1778 aa15.54■□□□□ 0.08
UPF3B-204ENST00000619445 FZD9O00144 591 aa15.53■□□□□ 0.08
UPF3B-204ENST00000619445 CALD1Q05682 793 aaKnown RBP15.53■□□□□ 0.08
UPF3B-204ENST00000619445 NEUROD2Q15784 382 aa15.53■□□□□ 0.08
UPF3B-204ENST00000619445 GPC2Q8N158 579 aa15.53■□□□□ 0.08
UPF3B-204ENST00000619445 CHMP4AQ9BY43 222 aa15.53■□□□□ 0.08
UPF3B-204ENST00000619445 HACL1Q9UJ83 578 aa15.53■□□□□ 0.08
UPF3B-204ENST00000619445 EIF6P56537 245 aaKnown RBP15.52■□□□□ 0.08
UPF3B-204ENST00000619445 TAF1DQ9H5J8 278 aaPredicted RBP15.52■□□□□ 0.08
UPF3B-204ENST00000619445 CREBZFQ9NS37 354 aa15.52■□□□□ 0.08
UPF3B-204ENST00000619445 SNED1Q8TER0 1413 aa15.51■□□□□ 0.07
UPF3B-204ENST00000619445 PPEF1O14829 653 aaPredicted RBP15.51■□□□□ 0.07
UPF3B-204ENST00000619445 HTRA3P83110 453 aa15.51■□□□□ 0.07
UPF3B-204ENST00000619445 COPS6Q7L5N1 327 aa15.51■□□□□ 0.07
UPF3B-204ENST00000619445 CCDC146Q8IYE0 955 aa15.51■□□□□ 0.07
UPF3B-204ENST00000619445 SUPT20HQ8NEM7 779 aa15.51■□□□□ 0.07
UPF3B-204ENST00000619445 CFAP44Q96MT7 982 aa15.51■□□□□ 0.07
UPF3B-204ENST00000619445 PRKRIP1Q9H875 184 aaPredicted RBP15.51■□□□□ 0.07
UPF3B-204ENST00000619445 DBF4Q9UBU7 674 aaPredicted RBP15.51■□□□□ 0.07
UPF3B-204ENST00000619445 BBOX1O75936 387 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 TCIRG1Q13488 830 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 HDGFL1Q5TGJ6 251 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 TMC4Q7Z404 712 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 XAGE3Q8WTP9 111 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 ADAMTS8Q9UP79 889 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 TRIM35Q9UPQ4 493 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 LAS1LQ9Y4W2 734 aaKnown RBP15.5■□□□□ 0.07
UPF3B-204ENST00000619445 SH3TC1Q8TE82 1336 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 ZNF541Q9H0D2 1346 aa15.5■□□□□ 0.07
UPF3B-204ENST00000619445 EPHX2P34913 555 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 PROSER3Q2NL68 480 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 OLFM4Q6UX06 510 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 NLRP10Q86W26 655 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 LARGE2Q8N3Y3 721 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 HYPKQ9NX55 129 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 ATP6V0A2Q9Y487 856 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 LMOD1P29536 600 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-204ENST00000619445 AIMP1Q12904 312 aaKnown RBP15.49■□□□□ 0.07
UPF3B-204ENST00000619445 PLBD2Q8NHP8 589 aa15.49■□□□□ 0.07
UPF3B-204ENST00000619445 TRMT112Q9UI30 125 aaKnown RBP15.49■□□□□ 0.07
UPF3B-204ENST00000619445 ANXA1P04083 346 aa15.48■□□□□ 0.07
UPF3B-204ENST00000619445 HSP90B1P14625 803 aaKnown RBP15.48■□□□□ 0.07
UPF3B-204ENST00000619445 DDX46Q7L014 1031 aaKnown RBP15.48■□□□□ 0.07
UPF3B-204ENST00000619445 NIM1KQ8IY84 436 aa15.48■□□□□ 0.07
UPF3B-204ENST00000619445 CHPF2Q9P2E5 772 aa15.48■□□□□ 0.07
UPF3B-204ENST00000619445 GNAI1P63096 354 aa15.47■□□□□ 0.07
UPF3B-204ENST00000619445 EAPPQ56P03 285 aaPredicted RBP15.47■□□□□ 0.07
UPF3B-204ENST00000619445 ANKRD13DQ6ZTN6 518 aa15.47■□□□□ 0.07
UPF3B-204ENST00000619445 SP8Q8IXZ3 490 aa15.47■□□□□ 0.07
UPF3B-204ENST00000619445 NECTIN2Q92692 538 aa15.47■□□□□ 0.07
UPF3B-204ENST00000619445 IFT57Q9NWB7 429 aa15.47■□□□□ 0.07
UPF3B-204ENST00000619445 CLEC11AQ9Y240 323 aa15.47■□□□□ 0.07
UPF3B-204ENST00000619445 ABCC4O15439 1325 aa15.46■□□□□ 0.07
UPF3B-204ENST00000619445 PASKQ96RG2 1323 aa15.46■□□□□ 0.07
UPF3B-204ENST00000619445 RTFDC1Q9BY42 306 aaPredicted RBP15.46■□□□□ 0.07
UPF3B-204ENST00000619445 LAMB2P55268 1798 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 TMEM88BA6NKF7 163 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 PPIP5K2O43314 1243 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 POTEIP0CG38 1075 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 POTEJP0CG39 1038 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 DUSP27Q5VZP5 1158 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 DPP8Q6V1X1 898 aaPredicted RBP15.45■□□□□ 0.06
UPF3B-204ENST00000619445 ADAMTSL1Q8N6G6 1762 aa15.45■□□□□ 0.06
UPF3B-204ENST00000619445 PCNTO95613 3336 aa15.44■□□□□ 0.06
UPF3B-204ENST00000619445 TRIM28Q13263 835 aaKnown RBP15.44■□□□□ 0.06
UPF3B-204ENST00000619445 GRAPQ13588 217 aa15.44■□□□□ 0.06
UPF3B-204ENST00000619445 C3orf67Q6ZVT6 689 aa15.44■□□□□ 0.06
UPF3B-204ENST00000619445 MPNDQ8N594 471 aa15.44■□□□□ 0.06
UPF3B-204ENST00000619445 GRAPLQ8TC17 118 aaPredicted RBP15.44■□□□□ 0.06
UPF3B-204ENST00000619445 GJA3Q9Y6H8 435 aa15.44■□□□□ 0.06
UPF3B-204ENST00000619445 CDHR2Q9BYE9 1310 aa15.44■□□□□ 0.06
UPF3B-204ENST00000619445 TCERG1O14776 1098 aaKnown RBP15.43■□□□□ 0.06
UPF3B-204ENST00000619445 ITGBL1O95965 494 aaPredicted RBP15.43■□□□□ 0.06
UPF3B-204ENST00000619445 ZNF853P0CG23 659 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 HCLS1P14317 486 aaPredicted RBP15.43■□□□□ 0.06
UPF3B-204ENST00000619445 GOLGA2Q08379 1002 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 KRT24Q2M2I5 525 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 USP50Q70EL3 339 aaPredicted RBP15.43■□□□□ 0.06
UPF3B-204ENST00000619445 ISCA1Q9BUE6 129 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 MBIPQ9NS73 344 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 ZNRF3Q9ULT6 936 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 CNTNAP1P78357 1384 aa15.43■□□□□ 0.06
UPF3B-204ENST00000619445 APAF1O14727 1248 aa15.42■□□□□ 0.06
UPF3B-204ENST00000619445 CNTROBQ8N137 903 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms