RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MYD88Q99836 296 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 HYPKQ9NX55 129 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 SHPRHQ149N8 1683 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 NRXN1Q9ULB1 1477 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 KRT32Q14532 448 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 FSIP1Q8NA03 581 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 LRRC59Q96AG4 307 aaKnown RBP14.81□□□□□ -0.04
LIG1-221ENST00000613670 NRBP1Q9UHY1 535 aa14.81□□□□□ -0.04
LIG1-221ENST00000613670 AATKQ6ZMQ8 1374 aa14.8□□□□□ -0.04
LIG1-221ENST00000613670 NPHP3Q7Z494 1330 aa14.8□□□□□ -0.04
LIG1-221ENST00000613670 SKILP12757 684 aa14.8□□□□□ -0.04
LIG1-221ENST00000613670 PDILTQ8N807 584 aa14.8□□□□□ -0.04
LIG1-221ENST00000613670 TPCN1Q9ULQ1 816 aa14.8□□□□□ -0.04
LIG1-221ENST00000613670 JAK2O60674 1132 aa14.8□□□□□ -0.04
LIG1-221ENST00000613670 ERCC4Q92889 916 aaPredicted RBP14.8□□□□□ -0.04
LIG1-221ENST00000613670 MAPK8IP2Q13387 824 aaPredicted RBP14.8□□□□□ -0.04
LIG1-221ENST00000613670 TTC41PQ6P2S7 1318 aa14.79□□□□□ -0.04
LIG1-221ENST00000613670 Q6ZUG5 572 aa14.79□□□□□ -0.04
LIG1-221ENST00000613670 SLC27A2O14975 620 aa14.79□□□□□ -0.04
LIG1-221ENST00000613670 ATP2B1P20020 1258 aa14.79□□□□□ -0.04
LIG1-221ENST00000613670 CHST3Q7LGC8 479 aa14.79□□□□□ -0.04
LIG1-221ENST00000613670 RALYLQ86SE5 291 aaKnown RBP14.79□□□□□ -0.04
LIG1-221ENST00000613670 CCDC85AQ96PX6 553 aaPredicted RBP14.79□□□□□ -0.04
LIG1-221ENST00000613670 ATP5J2-PTCD1G3V325 749 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 PTCD1O75127 700 aaKnown RBP14.78□□□□□ -0.04
LIG1-221ENST00000613670 FKBP4Q02790 459 aaKnown RBP eCLIP14.78□□□□□ -0.04
LIG1-221ENST00000613670 MAP3K5Q99683 1374 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 POLR3DP05423 398 aaPredicted RBP14.78□□□□□ -0.04
LIG1-221ENST00000613670 HOXC9P31274 260 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 CCDC129Q6ZRS4 1044 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 KIF18AQ8NI77 898 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 MROH2AA6NES4 1674 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 SLC39A6Q13433 755 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 ANO10Q9NW15 660 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 PODXL2Q9NZ53 605 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 USP16Q9Y5T5 823 aa14.78□□□□□ -0.04
LIG1-221ENST00000613670 COL3A1P02461 1466 aaPredicted RBP14.78□□□□□ -0.04
LIG1-221ENST00000613670 A0A087WWV3 80 aa14.77□□□□□ -0.04
LIG1-221ENST00000613670 GRM8O00222 908 aa14.77□□□□□ -0.04
LIG1-221ENST00000613670 KIAA1524Q8TCG1 905 aa14.77□□□□□ -0.04
LIG1-221ENST00000613670 LEO1Q8WVC0 666 aaPredicted RBP14.77□□□□□ -0.04
LIG1-221ENST00000613670 SYTL4Q96C24 671 aaPredicted RBP14.77□□□□□ -0.04
LIG1-221ENST00000613670 AOX1Q06278 1338 aa14.77□□□□□ -0.04
LIG1-221ENST00000613670 CDK12Q9NYV4 1490 aaPredicted RBP14.77□□□□□ -0.04
LIG1-221ENST00000613670 SERPINC1P01008 464 aa14.77□□□□□ -0.04
LIG1-221ENST00000613670 MLH3Q9UHC1 1453 aa14.77□□□□□ -0.05
LIG1-221ENST00000613670 SSH2Q76I76 1423 aa14.77□□□□□ -0.05
LIG1-221ENST00000613670 TRERF1Q96PN7 1200 aa14.77□□□□□ -0.05
LIG1-221ENST00000613670 BICC1Q9H694 974 aaKnown RBP14.77□□□□□ -0.05
LIG1-221ENST00000613670 VIRMAQ69YN4 1812 aaKnown RBP14.77□□□□□ -0.05
LIG1-221ENST00000613670 ATP7BP35670 1465 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 NR1I2O75469 434 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 ZC3H6P61129 1189 aaKnown RBP14.76□□□□□ -0.05
LIG1-221ENST00000613670 UBE3BQ7Z3V4 1068 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 PI4K2BQ8TCG2 481 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 GOLIM4O00461 696 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 PDIA4P13667 645 aaKnown RBP14.76□□□□□ -0.05
LIG1-221ENST00000613670 AOPEPQ8N6M6 819 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 SFPQP23246 707 aaKnown RBP eCLIP14.76□□□□□ -0.05
LIG1-221ENST00000613670 ZNF75DP51815 510 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 STX1AQ16623 288 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 KSR2Q6VAB6 950 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 TMC6Q7Z403 805 aa14.76□□□□□ -0.05
LIG1-221ENST00000613670 HAND2P61296 217 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 TRDNQ13061 729 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 TMX1Q9H3N1 280 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 TTC21AQ8NDW8 1320 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 CPSF1Q10570 1443 aaKnown RBP14.75□□□□□ -0.05
LIG1-221ENST00000613670 A0A0D9SFI3 127 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 NFXL1Q6ZNB6 911 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 CCDC69A6NI79 296 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 EAF2Q96CJ1 260 aaPredicted RBP14.75□□□□□ -0.05
LIG1-221ENST00000613670 ZSWIM6Q9HCJ5 1215 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 PAXBP1Q9Y5B6 917 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 PTPRMP28827 1452 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 ADGRB2O60241 1585 aa14.75□□□□□ -0.05
LIG1-221ENST00000613670 RPS6KB1P23443 525 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 TNNT3P45378 269 aaPredicted RBP14.74□□□□□ -0.05
LIG1-221ENST00000613670 CPLX2Q6PUV4 134 aaKnown RBP14.74□□□□□ -0.05
LIG1-221ENST00000613670 ARAP3Q8WWN8 1544 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 INO80Q9ULG1 1556 aaPredicted RBP14.74□□□□□ -0.05
LIG1-221ENST00000613670 SMTNL1A8MU46 457 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 ZBTB9Q96C00 473 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 SNRKQ9NRH2 765 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 ARGLU1Q9NWB6 273 aaPredicted RBP14.74□□□□□ -0.05
LIG1-221ENST00000613670 MRVI1Q9Y6F6 885 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 APOBRQ0VD83 1088 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 TRIM29Q14134 588 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 CAMSAP1Q5T5Y3 1602 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 SBNO1A3KN83 1393 aa14.74□□□□□ -0.05
LIG1-221ENST00000613670 ZSCAN25Q6NSZ9 544 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 U3KPZ7 1027 aaPredicted RBP14.73□□□□□ -0.05
LIG1-221ENST00000613670 A0A087WZG4 1122 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 CFAP100Q494V2 611 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 HSP90AA4PQ58FG1 418 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 BEND3Q5T5X7 828 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 CLSTN2Q9H4D0 955 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 NCOA5Q9HCD5 579 aaKnown RBP14.73□□□□□ -0.05
LIG1-221ENST00000613670 PHF8Q9UPP1 1060 aa14.73□□□□□ -0.05
LIG1-221ENST00000613670 EIF4A1P60842 406 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms