RNA–Protein interactions for RNA: ENST00000606715.3

SHANK2-219, Transcript of SH3 and multiple ankyrin repeat domains 2, human

Gene SHANK2, Length 5,738 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHANK2-219	ENST00000606715	ZGPAT	Q8N5A5	531 aa	Known RBP	12.81	□□□□□ -0.36
SHANK2-219	ENST00000606715	TTC16	Q8NEE8	873 aa		12.81	□□□□□ -0.36
SHANK2-219	ENST00000606715		F6X3S4	739 aa		12.81	□□□□□ -0.36
SHANK2-219	ENST00000606715		H0YHG0	523 aa		12.81	□□□□□ -0.36
SHANK2-219	ENST00000606715	ZCCHC11	Q5TAX3	1644 aa	Known RBP	12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	NLRP1	Q9C000	1473 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	TRIM27	P14373	513 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	PPP4R3B	Q5MIZ7	849 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	NPC1L1	Q9UHC9	1359 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	TAF4B	Q92750	862 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	NLRP3	Q96P20	1036 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	TESK2	Q96S53	571 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	CBFA2T2	O43439	604 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	RFX1	P22670	979 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	TNMD	Q9H2S6	317 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	NPHP4	O75161	1426 aa	Predicted RBP	12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	PARD3	Q8TEW0	1356 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	MAP3K5	Q99683	1374 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	ZNF710	Q8N1W2	664 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	BTG4	Q9NY30	223 aa		12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	RTCB	Q9Y3I0	505 aa	Known RBP	12.8	□□□□□ -0.36
SHANK2-219	ENST00000606715	CCDC194	A0A1B0GVG4	234 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	NFKBIB	Q15653	356 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	AXDND1	Q5T1B0	1012 aa	Predicted RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	TAX1BP1	Q86VP1	789 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	PZP	P20742	1482 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	KSR2	Q6VAB6	950 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	UBE3B	Q7Z3V4	1068 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	CKAP2L	Q8IYA6	745 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	PDE4B	Q07343	736 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	BACH2	Q9BYV9	841 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	BOLA2	Q9H3K6	86 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	VEZT	Q9HBM0	779 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	CATIP	Q7Z7H3	387 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	VAT1L	Q9HCJ6	419 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	SH2B1	Q9NRF2	756 aa	Predicted RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	SLC12A7	Q9Y666	1083 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	ADGB	Q8N7X0	1667 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	YEATS2	Q9ULM3	1422 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715		B4DLN1	442 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715		F8W031	263 aa	Predicted RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	HOXC9	P31274	260 aa		12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	MRPL12	P52815	198 aa	Known RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	ZNF397	Q8NF99	534 aa	Predicted RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	CCDC12	Q8WUD4	166 aa	Predicted RBP	12.79	□□□□□ -0.36
SHANK2-219	ENST00000606715	HECW2	Q9P2P5	1572 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	TSPY26P	Q9H489	355 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715		A0A1W2PP64	1363 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	SBNO1	A3KN83	1393 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	PRPF40A	O75400	957 aa	Known RBP	12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	KIF20A	O95235	890 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	NLRP5	P59047	1200 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	KDM6B	O15054	1643 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	ZFY	P08048	801 aa	Predicted RBP	12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	FAM43A	Q8N2R8	423 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	HOMER2	Q9NSB8	354 aa		12.78	□□□□□ -0.36
SHANK2-219	ENST00000606715	ZNF213	O14771	459 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	PLS1	Q14651	629 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	TPTE2	Q6XPS3	522 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	SPATA32	Q96LK8	384 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	PHAX	Q9H814	394 aa	Known RBP	12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	EFCAB6	Q5THR3	1501 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	PLEKHG1	Q9ULL1	1385 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	GRIPAP1	Q4V328	841 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	LRSAM1	Q6UWE0	723 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	PLCD4	Q9BRC7	762 aa		12.77	□□□□□ -0.36
SHANK2-219	ENST00000606715	TSPY2	A6NKD2	308 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	SLC4A8	Q2Y0W8	1093 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	MAGI3	Q5TCQ9	1506 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	FAM83G	A6ND36	823 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	CCDC82	Q8N4S0	544 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	CABLES1	Q8TDN4	633 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	XAGE3	Q8WTP9	111 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	PSMD1	Q99460	953 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	KAT14	Q9H8E8	782 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	CCDC178	Q5BJE1	867 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	DDX11	Q96FC9	970 aa		12.77	□□□□□ -0.37
SHANK2-219	ENST00000606715	CETN1	Q12798	172 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	CAVIN1	Q6NZI2	390 aa	Known RBP	12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	LINS1	Q8NG48	757 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	BICD1	Q96G01	975 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	UTP14A	Q9BVJ6	771 aa	Known RBP	12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	USP21	Q9UK80	565 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	KIF5B	P33176	963 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	BAG6	P46379	1132 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	TRAF1	Q13077	416 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	IFIT3	O14879	490 aa	Known RBP	12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	CCDC192	P0DO97	292 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	STXBP4	Q6ZWJ1	553 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	COPS6	Q7L5N1	327 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	VPS36	Q86VN1	386 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	ATP5J2-PTCD1	G3V325	749 aa		12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	IL15	P40933	162 aa	Predicted RBP	12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	CCDC8	Q9H0W5	538 aa	Predicted RBP	12.76	□□□□□ -0.37
SHANK2-219	ENST00000606715	PLEKHG3	A1L390	1219 aa		12.75	□□□□□ -0.37
SHANK2-219	ENST00000606715	HMGN5	P82970	282 aa	Known RBP	12.75	□□□□□ -0.37
SHANK2-219	ENST00000606715	MTHFSD	Q2M296	383 aa	Known RBP	12.75	□□□□□ -0.37
SHANK2-219	ENST00000606715	FKBP15	Q5T1M5	1219 aa		12.75	□□□□□ -0.37
SHANK2-219	ENST00000606715	KIAA1328	Q86T90	577 aa		12.75	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms