RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 CCDC27Q2M243 656 aa15.95■□□□□ 0.14
CTSA-210ENST00000606000 DBF4Q9UBU7 674 aaPredicted RBP15.95■□□□□ 0.14
CTSA-210ENST00000606000 DICER1Q9UPY3 1922 aaKnown RBP15.94■□□□□ 0.14
CTSA-210ENST00000606000 KIF3CO14782 793 aa15.94■□□□□ 0.14
CTSA-210ENST00000606000 SYNE4Q8N205 404 aa15.94■□□□□ 0.14
CTSA-210ENST00000606000 PHAXQ9H814 394 aaKnown RBP15.94■□□□□ 0.14
CTSA-210ENST00000606000 NMRK2Q9NPI5 230 aa15.94■□□□□ 0.14
CTSA-210ENST00000606000 TCERG1O14776 1098 aaKnown RBP15.93■□□□□ 0.14
CTSA-210ENST00000606000 LMNB1P20700 586 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 TCIRG1Q13488 830 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 CRY2Q49AN0 593 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 PARP10Q53GL7 1025 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 PPP1R42Q7Z4L9 355 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 NLRP10Q86W26 655 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 C7orf43Q8WVR3 580 aa15.93■□□□□ 0.14
CTSA-210ENST00000606000 PLBD2Q8NHP8 589 aa15.92■□□□□ 0.14
CTSA-210ENST00000606000 UTP14AQ9BVJ6 771 aaKnown RBP15.92■□□□□ 0.14
CTSA-210ENST00000606000 ATP5J2-PTCD1G3V325 749 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 HSP90AB3PQ58FF7 597 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 ANKRD13DQ6ZTN6 518 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 TAOK3Q9H2K8 898 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 HYPKQ9NX55 129 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 COL4A1P02462 1669 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 SNED1Q8TER0 1413 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 FANCIQ9NVI1 1328 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 TAF1P21675 1872 aa15.91■□□□□ 0.14
CTSA-210ENST00000606000 RPGRQ92834 1020 aaKnown RBP15.9■□□□□ 0.14
CTSA-210ENST00000606000 SPINK5Q9NQ38 1064 aaPredicted RBP15.9■□□□□ 0.14
CTSA-210ENST00000606000 HCLS1P14317 486 aaPredicted RBP15.89■□□□□ 0.13
CTSA-210ENST00000606000 CCDC93Q567U6 631 aa15.89■□□□□ 0.13
CTSA-210ENST00000606000 ISCA1Q9BUE6 129 aa15.89■□□□□ 0.13
CTSA-210ENST00000606000 TRMT112Q9UI30 125 aaKnown RBP15.89■□□□□ 0.13
CTSA-210ENST00000606000 IL16Q14005 1332 aa15.89■□□□□ 0.13
CTSA-210ENST00000606000 LTBP3Q9NS15 1303 aa15.89■□□□□ 0.13
CTSA-210ENST00000606000 ALDH1B1P30837 517 aa15.88■□□□□ 0.13
CTSA-210ENST00000606000 TWISTNBQ3B726 338 aaPredicted RBP15.88■□□□□ 0.13
CTSA-210ENST00000606000 COL4A5P29400 1685 aa15.88■□□□□ 0.13
CTSA-210ENST00000606000 HOXA10P31260 410 aaPredicted RBP15.87■□□□□ 0.13
CTSA-210ENST00000606000 GOLGA2Q08379 1002 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 NCBP3Q53F19 620 aaKnown RBP15.87■□□□□ 0.13
CTSA-210ENST00000606000 RTL5Q5HYW3 569 aaPredicted RBP15.87■□□□□ 0.13
CTSA-210ENST00000606000 SLC10A5Q5PT55 438 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 SOGA3Q5TF21 947 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 CCDC30Q5VVM6 783 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 RIC3Q7Z5B4 369 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 NLRP3Q96P20 1036 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 RRAGCQ9HB90 399 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 ZNF277Q9NRM2 450 aaPredicted RBP15.87■□□□□ 0.13
CTSA-210ENST00000606000 ABCC4O15439 1325 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 SH3TC1Q8TE82 1336 aa15.87■□□□□ 0.13
CTSA-210ENST00000606000 FKBP4Q02790 459 aaKnown RBP eCLIP15.86■□□□□ 0.13
CTSA-210ENST00000606000 G2E3Q7L622 706 aa15.86■□□□□ 0.13
CTSA-210ENST00000606000 FAM89AQ96GI7 184 aa15.86■□□□□ 0.13
CTSA-210ENST00000606000 RBM17Q96I25 401 aaKnown RBP15.86■□□□□ 0.13
CTSA-210ENST00000606000 MYD88Q99836 296 aa15.86■□□□□ 0.13
CTSA-210ENST00000606000 RNF123Q5XPI4 1314 aa15.86■□□□□ 0.13
CTSA-210ENST00000606000 KDM2BQ8NHM5 1336 aa15.86■□□□□ 0.13
CTSA-210ENST00000606000 ZC3H4Q9UPT8 1303 aaKnown RBP15.86■□□□□ 0.13
CTSA-210ENST00000606000 WDR90Q96KV7 1748 aa15.85■□□□□ 0.13
CTSA-210ENST00000606000 GLTPD2A6NH11 291 aa15.85■□□□□ 0.13
CTSA-210ENST00000606000 PPEF1O14829 653 aaPredicted RBP15.85■□□□□ 0.13
CTSA-210ENST00000606000 EXOSC9Q06265 439 aaKnown RBP15.85■□□□□ 0.13
CTSA-210ENST00000606000 WDR63Q8IWG1 891 aa15.85■□□□□ 0.13
CTSA-210ENST00000606000 CRAMP1Q96RY5 1269 aa15.85■□□□□ 0.13
CTSA-210ENST00000606000 JARID2Q92833 1246 aaPredicted RBP15.84■□□□□ 0.13
CTSA-210ENST00000606000 LRRC37AA6NMS7 1700 aa15.84■□□□□ 0.13
CTSA-210ENST00000606000 RTKN2Q8IZC4 609 aa15.83■□□□□ 0.12
CTSA-210ENST00000606000 MAP3K2Q9Y2U5 619 aa15.83■□□□□ 0.12
CTSA-210ENST00000606000 STK31Q9BXU1 1019 aa15.82■□□□□ 0.12
CTSA-210ENST00000606000 ZNF521Q96K83 1311 aa15.82■□□□□ 0.12
CTSA-210ENST00000606000 ZNF541Q9H0D2 1346 aa15.82■□□□□ 0.12
CTSA-210ENST00000606000 DUOX1Q9NRD9 1551 aa15.82■□□□□ 0.12
CTSA-210ENST00000606000 PI4KAP2A4QPH2 592 aa15.81■□□□□ 0.12
CTSA-210ENST00000606000 POTECB2RU33 542 aa15.81■□□□□ 0.12
CTSA-210ENST00000606000 VAMP4O75379 141 aa15.81■□□□□ 0.12
CTSA-210ENST00000606000 TOMM70O94826 608 aa15.81■□□□□ 0.12
CTSA-210ENST00000606000 DDNO94850 711 aaPredicted RBP15.81■□□□□ 0.12
CTSA-210ENST00000606000 SLC4A2P04920 1241 aa15.81■□□□□ 0.12
CTSA-210ENST00000606000 IARSP41252 1262 aaKnown RBP15.81■□□□□ 0.12
CTSA-210ENST00000606000 PI4KAP1Q8N8J0 262 aa15.81■□□□□ 0.12
CTSA-210ENST00000606000 METTL22Q9BUU2 404 aaPredicted RBP15.81■□□□□ 0.12
CTSA-210ENST00000606000 IRS4O14654 1257 aaPredicted RBP15.8■□□□□ 0.12
CTSA-210ENST00000606000 DDX58O95786 925 aaKnown RBP15.8■□□□□ 0.12
CTSA-210ENST00000606000 IGKV5-2P06315 115 aa15.8■□□□□ 0.12
CTSA-210ENST00000606000 TRIM28Q13263 835 aaKnown RBP15.8■□□□□ 0.12
CTSA-210ENST00000606000 PSMD1Q99460 953 aa15.8■□□□□ 0.12
CTSA-210ENST00000606000 GRAPQ13588 217 aa15.79■□□□□ 0.12
CTSA-210ENST00000606000 CWF19L2Q2TBE0 894 aaKnown RBP15.79■□□□□ 0.12
CTSA-210ENST00000606000 KSR2Q6VAB6 950 aa15.79■□□□□ 0.12
CTSA-210ENST00000606000 DDX46Q7L014 1031 aaKnown RBP15.79■□□□□ 0.12
CTSA-210ENST00000606000 C16orf71Q8IYS4 520 aaPredicted RBP15.79■□□□□ 0.12
CTSA-210ENST00000606000 ZBTB38Q8NAP3 1195 aaPredicted RBP15.79■□□□□ 0.12
CTSA-210ENST00000606000 GRAPLQ8TC17 118 aaPredicted RBP15.79■□□□□ 0.12
CTSA-210ENST00000606000 CELF1Q92879 486 aaKnown RBP15.79■□□□□ 0.12
CTSA-210ENST00000606000 ATP6V0A2Q9Y487 856 aa15.79■□□□□ 0.12
CTSA-210ENST00000606000 SPEF2Q9C093 1822 aa15.79■□□□□ 0.12
CTSA-210ENST00000606000 LTBP1Q14766 1721 aa15.78■□□□□ 0.12
CTSA-210ENST00000606000 HSPA6P17066 643 aa15.78■□□□□ 0.12
CTSA-210ENST00000606000 FLIIQ13045 1269 aa15.78■□□□□ 0.12
CTSA-210ENST00000606000 CC2D2BQ6DHV5 1058 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms