RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CHPF2Q9P2E5 772 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 CCDC73Q6ZRK6 1079 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 C17orf53Q8N3J3 647 aaPredicted RBP12.24□□□□□ -0.45
LIG1-220ENST00000601091 TBX22Q9Y458 520 aa12.24□□□□□ -0.45
LIG1-220ENST00000601091 PEX14O75381 377 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 MCM5P33992 734 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 STK3Q13188 491 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 LARP1Q6PKG0 1096 aaKnown RBP12.23□□□□□ -0.45
LIG1-220ENST00000601091 EVI5LQ96CN4 794 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 BOLA2Q9H3K6 86 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 HYPKQ9NX55 129 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 MAP3K2Q9Y2U5 619 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 PNMA6EA0A0J9YXQ4 647 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 FAM212AQ96EL1 285 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 BABAM1Q9NWV8 329 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 VWDEQ8N2E2 1590 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 HOXC9P31274 260 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 ZNF445P59923 1031 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 KRT32Q14532 448 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 DDX54Q8TDD1 881 aaKnown RBP12.23□□□□□ -0.45
LIG1-220ENST00000601091 LMBRD1Q9NUN5 540 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 RAI14Q9P0K7 980 aa12.23□□□□□ -0.45
LIG1-220ENST00000601091 MAP3K5Q99683 1374 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 PROSER2Q86WR7 435 aaPredicted RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 TRIM5Q9C035 493 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 CCDC8Q9H0W5 538 aaPredicted RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 PHAXQ9H814 394 aaKnown RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 H0YHG0 523 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 CPLX1O14810 134 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 SARNPP82979 210 aaKnown RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 HS1BP3Q53T59 392 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 TSHZ1Q6ZSZ6 1077 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 CDK12Q9NYV4 1490 aaPredicted RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 SPDYE4A6NLX3 237 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 ATF3P18847 181 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 DNAJC21Q5F1R6 531 aaKnown RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 FERMT3Q86UX7 667 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 NOL10Q9BSC4 688 aaKnown RBP12.22□□□□□ -0.45
LIG1-220ENST00000601091 TNMDQ9H2S6 317 aa12.22□□□□□ -0.45
LIG1-220ENST00000601091 ADGRB1O14514 1584 aa12.21□□□□□ -0.45
LIG1-220ENST00000601091 ZSCAN22P10073 491 aaPredicted RBP12.21□□□□□ -0.45
LIG1-220ENST00000601091 UBE2HP62256 183 aa12.21□□□□□ -0.45
LIG1-220ENST00000601091 TMEM2Q9UHN6 1383 aa12.21□□□□□ -0.45
LIG1-220ENST00000601091 USP48Q86UV5 1035 aa12.21□□□□□ -0.45
LIG1-220ENST00000601091 RBM33Q96EV2 1170 aaKnown RBP12.21□□□□□ -0.45
LIG1-220ENST00000601091 SPATA32Q96LK8 384 aa12.21□□□□□ -0.45
LIG1-220ENST00000601091 SUDS3Q9H7L9 328 aaPredicted RBP12.21□□□□□ -0.45
LIG1-220ENST00000601091 CPLX2Q6PUV4 134 aaKnown RBP12.21□□□□□ -0.46
LIG1-220ENST00000601091 SPC24Q8NBT2 197 aa12.21□□□□□ -0.46
LIG1-220ENST00000601091 NUP62CLQ9H1M0 184 aa12.21□□□□□ -0.46
LIG1-220ENST00000601091 ARHGEF10O15013 1369 aa12.21□□□□□ -0.46
LIG1-220ENST00000601091 DEPDC5O75140 1603 aa12.21□□□□□ -0.46
LIG1-220ENST00000601091 GJB2P29033 226 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 PPP2R5AQ15172 486 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 KIDINS220Q9ULH0 1771 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 ALDH1L1O75891 902 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 ZC3H6P61129 1189 aaKnown RBP12.2□□□□□ -0.46
LIG1-220ENST00000601091 ZRSR2Q15696 482 aaKnown RBP12.2□□□□□ -0.46
LIG1-220ENST00000601091 OSBPL3Q9H4L5 887 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 USP25Q9UHP3 1055 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 KIF4AO95239 1232 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 UVSSAQ2YD98 709 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 NCAPGQ9BPX3 1015 aa12.2□□□□□ -0.46
LIG1-220ENST00000601091 NSFL1CQ9UNZ2 370 aaKnown RBP12.2□□□□□ -0.46
LIG1-220ENST00000601091 OFD1O75665 1012 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 SLC20A2Q08357 652 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 TRDNQ13061 729 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 MAP3K11Q16584 847 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 WASHC4Q2M389 1173 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 AKAP4Q5JQC9 854 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 SDF4Q9BRK5 362 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 SCAND2PQ9GZW5 306 aaPredicted RBP12.19□□□□□ -0.46
LIG1-220ENST00000601091 TTC41PQ6P2S7 1318 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 PRR36Q9H6K5 1346 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 GOLGA6L1Q8N7Z2 621 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 RSPH14Q9UHP6 348 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 AOX1Q06278 1338 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 KSR2Q6VAB6 950 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 USP44Q9H0E7 712 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 CFAP45Q9UL16 551 aa12.19□□□□□ -0.46
LIG1-220ENST00000601091 KINO60870 393 aaKnown RBP12.18□□□□□ -0.46
LIG1-220ENST00000601091 LTKP29376 864 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 CABP4P57796 275 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 CEBPZQ03701 1054 aaKnown RBP12.18□□□□□ -0.46
LIG1-220ENST00000601091 ZKSCAN5Q9Y2L8 839 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 ALKQ9UM73 1620 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 AK2P54819 239 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 TMCO4Q5TGY1 634 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 NBPF10Q6P3W6 841 aaKnown RBP12.18□□□□□ -0.46
LIG1-220ENST00000601091 RALYLQ86SE5 291 aaKnown RBP12.18□□□□□ -0.46
LIG1-220ENST00000601091 EFCC1Q9HA90 598 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 CNPY2Q9Y2B0 182 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 SYNE3Q6ZMZ3 975 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 MYD88Q99836 296 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 NEXMIFQ5QGS0 1516 aa12.18□□□□□ -0.46
LIG1-220ENST00000601091 NLRP1Q9C000 1473 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 CPSF1Q10570 1443 aaKnown RBP12.17□□□□□ -0.46
LIG1-220ENST00000601091 KCNA6P17658 529 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 IP6K1Q92551 441 aa12.17□□□□□ -0.46
LIG1-220ENST00000601091 PTPRMP28827 1452 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms