RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TAOK3Q9H2K8 898 aa17.01■□□□□ 0.31
LIG1-212ENST00000596549 GTF2E1P29083 439 aaPredicted RBP17■□□□□ 0.31
LIG1-212ENST00000596549 CCDC93Q567U6 631 aa17■□□□□ 0.31
LIG1-212ENST00000596549 DUSP27Q5VZP5 1158 aa17■□□□□ 0.31
LIG1-212ENST00000596549 SCN4AP35499 1836 aa16.99■□□□□ 0.31
LIG1-212ENST00000596549 PARP10Q53GL7 1025 aa16.99■□□□□ 0.31
LIG1-212ENST00000596549 SOGA3Q5TF21 947 aa16.99■□□□□ 0.31
LIG1-212ENST00000596549 GLTPD2A6NH11 291 aa16.98■□□□□ 0.31
LIG1-212ENST00000596549 TOMM70O94826 608 aa16.98■□□□□ 0.31
LIG1-212ENST00000596549 HSPA6P17066 643 aa16.98■□□□□ 0.31
LIG1-212ENST00000596549 GNAI1P63096 354 aa16.98■□□□□ 0.31
LIG1-212ENST00000596549 MRS2Q9HD23 443 aa16.98■□□□□ 0.31
LIG1-212ENST00000596549 LTBP1Q14766 1721 aa16.97■□□□□ 0.31
LIG1-212ENST00000596549 PPP1R42Q7Z4L9 355 aa16.97■□□□□ 0.31
LIG1-212ENST00000596549 NLRP10Q86W26 655 aa16.97■□□□□ 0.31
LIG1-212ENST00000596549 RRAGCQ9HB90 399 aa16.97■□□□□ 0.31
LIG1-212ENST00000596549 DBF4Q9UBU7 674 aaPredicted RBP16.97■□□□□ 0.31
LIG1-212ENST00000596549 DUOX1Q9NRD9 1551 aa16.97■□□□□ 0.31
LIG1-212ENST00000596549 ADAMTSL1Q8N6G6 1762 aa16.97■□□□□ 0.31
LIG1-212ENST00000596549 RNF123Q5XPI4 1314 aa16.96■□□□□ 0.31
LIG1-212ENST00000596549 ANP32CO43423 234 aa16.96■□□□□ 0.31
LIG1-212ENST00000596549 HOXA10P31260 410 aaPredicted RBP16.96■□□□□ 0.31
LIG1-212ENST00000596549 FKBP4Q02790 459 aaKnown RBP eCLIP16.96■□□□□ 0.31
LIG1-212ENST00000596549 CALD1Q05682 793 aaKnown RBP16.96■□□□□ 0.31
LIG1-212ENST00000596549 HSP90AB3PQ58FF7 597 aa16.96■□□□□ 0.31
LIG1-212ENST00000596549 CEP350Q5VT06 3117 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 ALDH1B1P30837 517 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 TCIRG1Q13488 830 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 CCDC27Q2M243 656 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 SYNE4Q8N205 404 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 C8orf58Q8NAV2 365 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 PLBD2Q8NHP8 589 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
LIG1-212ENST00000596549 RPGRQ92834 1020 aaKnown RBP16.95■□□□□ 0.3
LIG1-212ENST00000596549 UTP14AQ9BVJ6 771 aaKnown RBP16.95■□□□□ 0.3
LIG1-212ENST00000596549 MYH3P11055 1940 aa16.95■□□□□ 0.3
LIG1-212ENST00000596549 SPEF2Q9C093 1822 aa16.94■□□□□ 0.3
LIG1-212ENST00000596549 POTECB2RU33 542 aa16.94■□□□□ 0.3
LIG1-212ENST00000596549 ELL2O00472 640 aaPredicted RBP16.94■□□□□ 0.3
LIG1-212ENST00000596549 TSR2Q969E8 191 aaKnown RBP16.94■□□□□ 0.3
LIG1-212ENST00000596549 ZNF428Q96B54 188 aa16.94■□□□□ 0.3
LIG1-212ENST00000596549 ZNF277Q9NRM2 450 aaPredicted RBP16.94■□□□□ 0.3
LIG1-212ENST00000596549 CACNA1FO60840 1977 aa16.94■□□□□ 0.3
LIG1-212ENST00000596549 SLC10A5Q5PT55 438 aa16.93■□□□□ 0.3
LIG1-212ENST00000596549 WWC1Q8IX03 1113 aa16.93■□□□□ 0.3
LIG1-212ENST00000596549 TSPYL6Q8N831 410 aa16.93■□□□□ 0.3
LIG1-212ENST00000596549 ISCA1Q9BUE6 129 aa16.93■□□□□ 0.3
LIG1-212ENST00000596549 PHAXQ9H814 394 aaKnown RBP16.93■□□□□ 0.3
LIG1-212ENST00000596549 HYPKQ9NX55 129 aa16.93■□□□□ 0.3
LIG1-212ENST00000596549 ABCC4O15439 1325 aa16.93■□□□□ 0.3
LIG1-212ENST00000596549 PPEF1O14829 653 aaPredicted RBP16.92■□□□□ 0.3
LIG1-212ENST00000596549 ANKRD13DQ6ZTN6 518 aa16.92■□□□□ 0.3
LIG1-212ENST00000596549 CRAMP1Q96RY5 1269 aa16.92■□□□□ 0.3
LIG1-212ENST00000596549 SH3TC1Q8TE82 1336 aa16.92■□□□□ 0.3
LIG1-212ENST00000596549 ZNF541Q9H0D2 1346 aa16.92■□□□□ 0.3
LIG1-212ENST00000596549 HCLS1P14317 486 aaPredicted RBP16.91■□□□□ 0.3
LIG1-212ENST00000596549 C16orf71Q8IYS4 520 aaPredicted RBP16.91■□□□□ 0.3
LIG1-212ENST00000596549 RTKN2Q8IZC4 609 aa16.91■□□□□ 0.3
LIG1-212ENST00000596549 RBM17Q96I25 401 aaKnown RBP16.91■□□□□ 0.3
LIG1-212ENST00000596549 NLRP3Q96P20 1036 aa16.91■□□□□ 0.3
LIG1-212ENST00000596549 ATP5J2-PTCD1G3V325 749 aa16.9■□□□□ 0.3
LIG1-212ENST00000596549 DDNO94850 711 aaPredicted RBP16.9■□□□□ 0.3
LIG1-212ENST00000596549 IARSP41252 1262 aaKnown RBP16.9■□□□□ 0.3
LIG1-212ENST00000596549 PSMD1Q99460 953 aa16.9■□□□□ 0.3
LIG1-212ENST00000596549 TRMT112Q9UI30 125 aaKnown RBP16.9■□□□□ 0.3
LIG1-212ENST00000596549 VEGFAP15692 232 aaPredicted RBP16.89■□□□□ 0.29
LIG1-212ENST00000596549 NCBP3Q53F19 620 aaKnown RBP16.89■□□□□ 0.29
LIG1-212ENST00000596549 IL16Q14005 1332 aa16.89■□□□□ 0.29
LIG1-212ENST00000596549 FSTL1Q12841 308 aa16.88■□□□□ 0.29
LIG1-212ENST00000596549 DPY19L2Q6NUT2 758 aa16.88■□□□□ 0.29
LIG1-212ENST00000596549 FANCIQ9NVI1 1328 aa16.88■□□□□ 0.29
LIG1-212ENST00000596549 TCERG1O14776 1098 aaKnown RBP16.87■□□□□ 0.29
LIG1-212ENST00000596549 GOLGA2Q08379 1002 aa16.87■□□□□ 0.29
LIG1-212ENST00000596549 CC2D2BQ6DHV5 1058 aa16.87■□□□□ 0.29
LIG1-212ENST00000596549 FAM89AQ96GI7 184 aa16.87■□□□□ 0.29
LIG1-212ENST00000596549 APLP1P51693 650 aa16.86■□□□□ 0.29
LIG1-212ENST00000596549 CCDC30Q5VVM6 783 aa16.86■□□□□ 0.29
LIG1-212ENST00000596549 RIC3Q7Z5B4 369 aa16.86■□□□□ 0.29
LIG1-212ENST00000596549 SMC1BQ8NDV3 1235 aa16.86■□□□□ 0.29
LIG1-212ENST00000596549 L3MBTL3Q96JM7 780 aaPredicted RBP16.86■□□□□ 0.29
LIG1-212ENST00000596549 ATP6V0A2Q9Y487 856 aa16.86■□□□□ 0.29
LIG1-212ENST00000596549 A0A1B0GUL6 1792 aa16.86■□□□□ 0.29
LIG1-212ENST00000596549 FZD9O00144 591 aa16.85■□□□□ 0.29
LIG1-212ENST00000596549 POTEIP0CG38 1075 aa16.85■□□□□ 0.29
LIG1-212ENST00000596549 POTEJP0CG39 1038 aa16.85■□□□□ 0.29
LIG1-212ENST00000596549 HTRA3P83110 453 aa16.85■□□□□ 0.29
LIG1-212ENST00000596549 TRIM28Q13263 835 aaKnown RBP16.85■□□□□ 0.29
LIG1-212ENST00000596549 GRAPQ13588 217 aa16.85■□□□□ 0.29
LIG1-212ENST00000596549 TWISTNBQ3B726 338 aaPredicted RBP16.85■□□□□ 0.29
LIG1-212ENST00000596549 RTL5Q5HYW3 569 aaPredicted RBP16.85■□□□□ 0.29
LIG1-212ENST00000596549 GRAPLQ8TC17 118 aaPredicted RBP16.85■□□□□ 0.29
LIG1-212ENST00000596549 MYD88Q99836 296 aa16.85■□□□□ 0.29
LIG1-212ENST00000596549 SALL2Q9Y467 1007 aaPredicted RBP16.85■□□□□ 0.29
LIG1-212ENST00000596549 PSME4Q14997 1843 aa16.84■□□□□ 0.29
LIG1-212ENST00000596549 ZNF646O15015 1829 aaPredicted RBP16.83■□□□□ 0.28
LIG1-212ENST00000596549 SPINK5Q9NQ38 1064 aaPredicted RBP16.83■□□□□ 0.28
LIG1-212ENST00000596549 SF3B3Q15393 1217 aaKnown RBP16.82■□□□□ 0.28
LIG1-212ENST00000596549 AOC3Q16853 763 aa16.82■□□□□ 0.28
LIG1-212ENST00000596549 GRIPAP1Q4V328 841 aa16.82■□□□□ 0.28
LIG1-212ENST00000596549 DDX46Q7L014 1031 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms