RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 METTL22Q9BUU2 404 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 ZBTB1Q9Y2K1 713 aa16.42■□□□□ 0.22
SHKBP1-209ENST00000595803 HMGB2P26583 209 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-209ENST00000595803 ARHGAP27Q6ZUM4 889 aa16.41■□□□□ 0.22
SHKBP1-209ENST00000595803 MYD88Q99836 296 aa16.41■□□□□ 0.22
SHKBP1-209ENST00000595803 GNAI3P08754 354 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 RC3H1Q5TC82 1133 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 C9orf131Q5VYM1 1079 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 SMIM5Q71RC9 77 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 LINC00116Q8NCU8 138 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 SMC1BQ8NDV3 1235 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 LINS1Q8NG48 757 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 AK7Q96M32 723 aa16.4■□□□□ 0.22
SHKBP1-209ENST00000595803 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-209ENST00000595803 RWDD1Q9H446 243 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-209ENST00000595803 ZBTB3Q9H5J0 574 aa16.39■□□□□ 0.21
SHKBP1-209ENST00000595803 PCDHB15Q9Y5E8 787 aa16.39■□□□□ 0.21
SHKBP1-209ENST00000595803 KDM2BQ8NHM5 1336 aa16.39■□□□□ 0.21
SHKBP1-209ENST00000595803 TJP1Q07157 1748 aa16.39■□□□□ 0.21
SHKBP1-209ENST00000595803 A0A087WZG4 1122 aa16.38■□□□□ 0.21
SHKBP1-209ENST00000595803 EIF5P55010 431 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-209ENST00000595803 MEIS3Q99687 375 aa16.38■□□□□ 0.21
SHKBP1-209ENST00000595803 C9orf78Q9NZ63 289 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-209ENST00000595803 HDAC5Q9UQL6 1122 aa16.38■□□□□ 0.21
SHKBP1-209ENST00000595803 GNAI2P04899 355 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 DZIP3Q86Y13 1208 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 USP44Q9H0E7 712 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 C1orf115Q9H7X2 142 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 RRAGCQ9HB90 399 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 MAP3K15Q6ZN16 1313 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 CNTNAP4Q9C0A0 1308 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 BRCA1P38398 1863 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 ZNF831Q5JPB2 1677 aa16.37■□□□□ 0.21
SHKBP1-209ENST00000595803 A0A0G2JLW4 131 aa16.36■□□□□ 0.21
SHKBP1-209ENST00000595803 UBTFL1P0CB47 393 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-209ENST00000595803 CWF19L2Q2TBE0 894 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-209ENST00000595803 FAM161AQ3B820 660 aa16.36■□□□□ 0.21
SHKBP1-209ENST00000595803 HSP90AB3PQ58FF7 597 aa16.36■□□□□ 0.21
SHKBP1-209ENST00000595803 TBC1D2BQ9UPU7 963 aa16.36■□□□□ 0.21
SHKBP1-209ENST00000595803 NEURL1BA8MQ27 555 aa16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 ERVV-1B6SEH8 477 aa16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 ATP5J2-PTCD1G3V325 749 aa16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 RPS6KA4O75676 772 aa16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 IGKV5-2P06315 115 aa16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 TCIRG1Q13488 830 aa16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 CENPQQ7L2Z9 268 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 RPAP2Q8IXW5 612 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-209ENST00000595803 ARFGEF1Q9Y6D6 1849 aa16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 IGHDP01880 384 aa16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 MMP10P09238 476 aa16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 SSFA2P28290 1259 aa16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 TGFB2P61812 414 aa16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 GIGYF2Q6Y7W6 1299 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 RTCBQ9Y3I0 505 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-209ENST00000595803 GNPATO15228 680 aa16.33■□□□□ 0.2
SHKBP1-209ENST00000595803 HDAC1Q13547 482 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-209ENST00000595803 GCKRQ14397 625 aa16.33■□□□□ 0.2
SHKBP1-209ENST00000595803 GRM8O00222 908 aa16.32■□□□□ 0.2
SHKBP1-209ENST00000595803 HLFQ16534 295 aa16.32■□□□□ 0.2
SHKBP1-209ENST00000595803 CCDC191Q8NCU4 936 aa16.32■□□□□ 0.2
SHKBP1-209ENST00000595803 ISCA1Q9BUE6 129 aa16.32■□□□□ 0.2
SHKBP1-209ENST00000595803 CWC25Q9NXE8 425 aaPredicted RBP16.32■□□□□ 0.2
SHKBP1-209ENST00000595803 RNF181Q9P0P0 153 aa16.32■□□□□ 0.2
SHKBP1-209ENST00000595803 NBPF7P0C2Y1 421 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-209ENST00000595803 TRIM28Q13263 835 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-209ENST00000595803 TRAPPC3LQ5T215 181 aa16.31■□□□□ 0.2
SHKBP1-209ENST00000595803 ANKRD44Q8N8A2 993 aa16.31■□□□□ 0.2
SHKBP1-209ENST00000595803 LRRFIP2Q9Y608 721 aaKnown RBP16.31■□□□□ 0.2
SHKBP1-209ENST00000595803 COL5A3P25940 1745 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-209ENST00000595803 COL15A1P39059 1388 aa16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 IBTKQ9P2D0 1353 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 MYH14Q7Z406 1995 aaKnown RBP16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 HMMRO75330 724 aa16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 DPEP1P16444 411 aa16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 ATP8B2P98198 1209 aa16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 CEP85Q6P2H3 762 aa16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 ZNF652Q9Y2D9 606 aa16.3■□□□□ 0.2
SHKBP1-209ENST00000595803 ARFGEF2Q9Y6D5 1785 aa16.29■□□□□ 0.2
SHKBP1-209ENST00000595803 UTYO14607 1347 aa16.29■□□□□ 0.2
SHKBP1-209ENST00000595803 FOXN1O15353 648 aa16.29■□□□□ 0.2
SHKBP1-209ENST00000595803 ZPR1O75312 459 aa16.29■□□□□ 0.2
SHKBP1-209ENST00000595803 CAMTA2O94983 1202 aa16.29■□□□□ 0.2
SHKBP1-209ENST00000595803 H7C1W4 665 aa16.28■□□□□ 0.2
SHKBP1-209ENST00000595803 SIRT2Q8IXJ6 389 aa16.28■□□□□ 0.2
SHKBP1-209ENST00000595803 ARHGEF1Q92888 912 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-209ENST00000595803 NARFQ9UHQ1 456 aa16.28■□□□□ 0.2
SHKBP1-209ENST00000595803 C4AP0C0L4 1744 aa16.28■□□□□ 0.2
SHKBP1-209ENST00000595803 ADRA2BP18089 450 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 GPTP24298 496 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 RFC4P35249 363 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 CLEC4GQ6UXB4 293 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 ZNF34Q8IZ26 560 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 JARID2Q92833 1246 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 SUCLG2Q96I99 432 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 PRDM10Q9NQV6 1147 aa16.27■□□□□ 0.2
SHKBP1-209ENST00000595803 RGL2O15211 777 aa16.26■□□□□ 0.19
SHKBP1-209ENST00000595803 UBE3BQ7Z3V4 1068 aa16.26■□□□□ 0.19
SHKBP1-209ENST00000595803 NLRP10Q86W26 655 aa16.26■□□□□ 0.19
SHKBP1-209ENST00000595803 GCC1Q96CN9 775 aa16.26■□□□□ 0.19
SHKBP1-209ENST00000595803 SBF1O95248 1867 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms