RNA–Protein interactions for RNA: ENST00000594965.1

GTF2F1-204, Transcript of general transcription factor IIF subunit 1, humanhuman

TSL 3

Gene GTF2F1, Length 762 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-204ENST00000594965 SALL2Q9Y467 1007 aaPredicted RBP28.91■■■□□ 2.22
GTF2F1-204ENST00000594965 CRY2Q49AN0 593 aa28.9■■■□□ 2.22
GTF2F1-204ENST00000594965 TIAM2Q8IVF5 1701 aa28.9■■■□□ 2.22
GTF2F1-204ENST00000594965 PLBD2Q8NHP8 589 aa28.9■■■□□ 2.22
GTF2F1-204ENST00000594965 ANKRD13DQ6ZTN6 518 aa28.89■■■□□ 2.22
GTF2F1-204ENST00000594965 NLRP10Q86W26 655 aa28.89■■■□□ 2.22
GTF2F1-204ENST00000594965 C7orf43Q8WVR3 580 aa28.89■■■□□ 2.22
GTF2F1-204ENST00000594965 UTP14AQ9BVJ6 771 aaKnown RBP28.88■■■□□ 2.21
GTF2F1-204ENST00000594965 PHAXQ9H814 394 aaKnown RBP28.88■■■□□ 2.21
GTF2F1-204ENST00000594965 LMNB1P20700 586 aa28.86■■■□□ 2.21
GTF2F1-204ENST00000594965 SLC10A5Q5PT55 438 aa28.86■■■□□ 2.21
GTF2F1-204ENST00000594965 C3orf67Q6ZVT6 689 aa28.86■■■□□ 2.21
GTF2F1-204ENST00000594965 WDR63Q8IWG1 891 aa28.86■■■□□ 2.21
GTF2F1-204ENST00000594965 DDX60Q8IY21 1712 aaKnown RBP28.86■■■□□ 2.21
GTF2F1-204ENST00000594965 ISCA1Q9BUE6 129 aa28.85■■■□□ 2.21
GTF2F1-204ENST00000594965 C1QTNF8P60827 252 aa28.84■■■□□ 2.21
GTF2F1-204ENST00000594965 FANCIQ9NVI1 1328 aa28.84■■■□□ 2.21
GTF2F1-204ENST00000594965 ALDH1B1P30837 517 aa28.83■■■□□ 2.21
GTF2F1-204ENST00000594965 HOXA10P31260 410 aaPredicted RBP28.83■■■□□ 2.21
GTF2F1-204ENST00000594965 CCDC30Q5VVM6 783 aa28.83■■■□□ 2.21
GTF2F1-204ENST00000594965 SYNE4Q8N205 404 aa28.83■■■□□ 2.21
GTF2F1-204ENST00000594965 OLFM4Q6UX06 510 aa28.82■■■□□ 2.2
GTF2F1-204ENST00000594965 SPINK5Q9NQ38 1064 aaPredicted RBP28.82■■■□□ 2.2
GTF2F1-204ENST00000594965 RNF123Q5XPI4 1314 aa28.82■■■□□ 2.2
GTF2F1-204ENST00000594965 LTBP3Q9NS15 1303 aa28.82■■■□□ 2.2
GTF2F1-204ENST00000594965 CACNA1FO60840 1977 aa28.82■■■□□ 2.2
GTF2F1-204ENST00000594965 KIF3CO14782 793 aa28.81■■■□□ 2.2
GTF2F1-204ENST00000594965 TWISTNBQ3B726 338 aaPredicted RBP28.81■■■□□ 2.2
GTF2F1-204ENST00000594965 SOGA3Q5TF21 947 aa28.81■■■□□ 2.2
GTF2F1-204ENST00000594965 ZNF428Q96B54 188 aa28.81■■■□□ 2.2
GTF2F1-204ENST00000594965 ATP5J2-PTCD1G3V325 749 aa28.8■■■□□ 2.2
GTF2F1-204ENST00000594965 TAOK3Q9H2K8 898 aa28.8■■■□□ 2.2
GTF2F1-204ENST00000594965 TRMT112Q9UI30 125 aaKnown RBP28.8■■■□□ 2.2
GTF2F1-204ENST00000594965 TAF1P21675 1872 aa28.8■■■□□ 2.2
GTF2F1-204ENST00000594965 SNED1Q8TER0 1413 aa28.79■■■□□ 2.2
GTF2F1-204ENST00000594965 ZC3H4Q9UPT8 1303 aaKnown RBP28.79■■■□□ 2.2
GTF2F1-204ENST00000594965 RPGRQ92834 1020 aaKnown RBP28.79■■■□□ 2.2
GTF2F1-204ENST00000594965 NLRP3Q96P20 1036 aa28.79■■■□□ 2.2
GTF2F1-204ENST00000594965 TCERG1O14776 1098 aaKnown RBP28.78■■■□□ 2.2
GTF2F1-204ENST00000594965 CCDC93Q567U6 631 aa28.78■■■□□ 2.2
GTF2F1-204ENST00000594965 RIC3Q7Z5B4 369 aa28.78■■■□□ 2.2
GTF2F1-204ENST00000594965 CHMP4AQ9BY43 222 aa28.78■■■□□ 2.2
GTF2F1-204ENST00000594965 NMRK2Q9NPI5 230 aa28.78■■■□□ 2.2
GTF2F1-204ENST00000594965 SH3TC1Q8TE82 1336 aa28.77■■■□□ 2.2
GTF2F1-204ENST00000594965 HCLS1P14317 486 aaPredicted RBP28.77■■■□□ 2.2
GTF2F1-204ENST00000594965 GOLGA2Q08379 1002 aa28.77■■■□□ 2.2
GTF2F1-204ENST00000594965 TRIM28Q13263 835 aaKnown RBP28.77■■■□□ 2.2
GTF2F1-204ENST00000594965 CRAMP1Q96RY5 1269 aa28.77■■■□□ 2.2
GTF2F1-204ENST00000594965 RBM17Q96I25 401 aaKnown RBP28.76■■■□□ 2.19
GTF2F1-204ENST00000594965 ZNF521Q96K83 1311 aa28.75■■■□□ 2.19
GTF2F1-204ENST00000594965 SLC51AQ86UW1 340 aa28.75■■■□□ 2.19
GTF2F1-204ENST00000594965 VAMP4O75379 141 aa28.74■■■□□ 2.19
GTF2F1-204ENST00000594965 EXOSC9Q06265 439 aaKnown RBP28.74■■■□□ 2.19
GTF2F1-204ENST00000594965 G2E3Q7L622 706 aa28.73■■■□□ 2.19
GTF2F1-204ENST00000594965 FAM89AQ96GI7 184 aa28.73■■■□□ 2.19
GTF2F1-204ENST00000594965 MYD88Q99836 296 aa28.73■■■□□ 2.19
GTF2F1-204ENST00000594965 FKBP4Q02790 459 aaKnown RBP eCLIP28.72■■■□□ 2.19
GTF2F1-204ENST00000594965 RTKN2Q8IZC4 609 aa28.72■■■□□ 2.19
GTF2F1-204ENST00000594965 STK31Q9BXU1 1019 aa28.72■■■□□ 2.19
GTF2F1-204ENST00000594965 ABCC4O15439 1325 aa28.71■■■□□ 2.19
GTF2F1-204ENST00000594965 KDM2BQ8NHM5 1336 aa28.71■■■□□ 2.19
GTF2F1-204ENST00000594965 METTL22Q9BUU2 404 aaPredicted RBP28.71■■■□□ 2.19
GTF2F1-204ENST00000594965 GLTPD2A6NH11 291 aa28.7■■■□□ 2.18
GTF2F1-204ENST00000594965 CCER2I3L3R5 266 aa28.7■■■□□ 2.18
GTF2F1-204ENST00000594965 DDX58O95786 925 aaKnown RBP28.7■■■□□ 2.18
GTF2F1-204ENST00000594965 SLC4A2P04920 1241 aa28.7■■■□□ 2.18
GTF2F1-204ENST00000594965 KSR2Q6VAB6 950 aa28.7■■■□□ 2.18
GTF2F1-204ENST00000594965 MAP3K2Q9Y2U5 619 aa28.7■■■□□ 2.18
GTF2F1-204ENST00000594965 PPEF1O14829 653 aaPredicted RBP28.69■■■□□ 2.18
GTF2F1-204ENST00000594965 RRAGCQ9HB90 399 aa28.69■■■□□ 2.18
GTF2F1-204ENST00000594965 ZNF277Q9NRM2 450 aaPredicted RBP28.69■■■□□ 2.18
GTF2F1-204ENST00000594965 WDR90Q96KV7 1748 aa28.69■■■□□ 2.18
GTF2F1-204ENST00000594965 PI4KAP2A4QPH2 592 aa28.68■■■□□ 2.18
GTF2F1-204ENST00000594965 RTL5Q5HYW3 569 aaPredicted RBP28.68■■■□□ 2.18
GTF2F1-204ENST00000594965 CC2D2BQ6DHV5 1058 aa28.68■■■□□ 2.18
GTF2F1-204ENST00000594965 PI4KAP1Q8N8J0 262 aa28.68■■■□□ 2.18
GTF2F1-204ENST00000594965 COL4A1P02462 1669 aa28.67■■■□□ 2.18
GTF2F1-204ENST00000594965 MYH16Q9H6N6 1097 aa28.67■■■□□ 2.18
GTF2F1-204ENST00000594965 ZBTB38Q8NAP3 1195 aaPredicted RBP28.66■■■□□ 2.18
GTF2F1-204ENST00000594965 CCDC191Q8NCU4 936 aa28.66■■■□□ 2.18
GTF2F1-204ENST00000594965 PSMD1Q99460 953 aa28.66■■■□□ 2.18
GTF2F1-204ENST00000594965 SF3B3Q15393 1217 aaKnown RBP28.65■■■□□ 2.18
GTF2F1-204ENST00000594965 ATP6V0A2Q9Y487 856 aa28.65■■■□□ 2.18
GTF2F1-204ENST00000594965 LRRC37AA6NMS7 1700 aa28.64■■■□□ 2.18
GTF2F1-204ENST00000594965 IRS4O14654 1257 aaPredicted RBP28.64■■■□□ 2.18
GTF2F1-204ENST00000594965 IGKV5-2P06315 115 aa28.64■■■□□ 2.18
GTF2F1-204ENST00000594965 CWC25Q9NXE8 425 aaPredicted RBP28.64■■■□□ 2.18
GTF2F1-204ENST00000594965 COL4A5P29400 1685 aa28.64■■■□□ 2.17
GTF2F1-204ENST00000594965 TOMM70O94826 608 aa28.63■■■□□ 2.17
GTF2F1-204ENST00000594965 IARSP41252 1262 aaKnown RBP28.63■■■□□ 2.17
GTF2F1-204ENST00000594965 FLIIQ13045 1269 aa28.63■■■□□ 2.17
GTF2F1-204ENST00000594965 DDX46Q7L014 1031 aaKnown RBP28.63■■■□□ 2.17
GTF2F1-204ENST00000594965 MYH3P11055 1940 aa28.63■■■□□ 2.17
GTF2F1-204ENST00000594965 POTECB2RU33 542 aa28.62■■■□□ 2.17
GTF2F1-204ENST00000594965 BBOX1O75936 387 aa28.62■■■□□ 2.17
GTF2F1-204ENST00000594965 PCCAP05165 728 aaPredicted RBP28.62■■■□□ 2.17
GTF2F1-204ENST00000594965 GRAPQ13588 217 aa28.62■■■□□ 2.17
GTF2F1-204ENST00000594965 GRIPAP1Q4V328 841 aa28.62■■■□□ 2.17
GTF2F1-204ENST00000594965 GRAPLQ8TC17 118 aaPredicted RBP28.62■■■□□ 2.17
GTF2F1-204ENST00000594965 JARID2Q92833 1246 aaPredicted RBP28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms