RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 ARHGEF10LQ9HCE6 1279 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 STIM2Q9P246 746 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 BRPF3Q9ULD4 1205 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 ABCA6Q8N139 1617 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 MROH2AA6NES4 1674 aa8.2□□□□□ -1.1
SMAD4-208ENST00000589706 WNT7AO00755 349 aa8.19□□□□□ -1.1
SMAD4-208ENST00000589706 CDK2AP1O14519 115 aa8.19□□□□□ -1.1
SMAD4-208ENST00000589706 IL2RAP01589 272 aa8.19□□□□□ -1.1
SMAD4-208ENST00000589706 EIF1AXP47813 144 aaKnown RBP8.19□□□□□ -1.1
SMAD4-208ENST00000589706 CITED4Q96RK1 184 aa8.19□□□□□ -1.1
SMAD4-208ENST00000589706 CHMP3Q9Y3E7 222 aa8.19□□□□□ -1.1
SMAD4-208ENST00000589706 MLH3Q9UHC1 1453 aa8.19□□□□□ -1.1
SMAD4-208ENST00000589706 SAMD9Q5K651 1589 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 LOC105371045A0A1W2PR82 267 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 TNFRSF10BO14763 440 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 TREHO43280 583 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 AAMPQ13685 434 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 CNKSR1Q969H4 720 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 EMID1Q96A84 441 aaPredicted RBP8.18□□□□□ -1.1
SMAD4-208ENST00000589706 MRGPRX2Q96LB1 330 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 ESYT1Q9BSJ8 1104 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 QTRT2Q9H974 415 aaKnown RBP8.18□□□□□ -1.1
SMAD4-208ENST00000589706 VWDEQ8N2E2 1590 aa8.18□□□□□ -1.1
SMAD4-208ENST00000589706 FZD6O60353 706 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 P4HBP07237 508 aaKnown RBP8.17□□□□□ -1.1
SMAD4-208ENST00000589706 TLR1Q15399 786 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 TMC1Q8TDI8 760 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 MYO19Q96H55 970 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 CCDC87Q9NVE4 849 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 IQSEC3Q9UPP2 1182 aaPredicted RBP8.17□□□□□ -1.1
SMAD4-208ENST00000589706 HRH3Q9Y5N1 445 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 USP3Q9Y6I4 520 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 NEURL4Q96JN8 1562 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 MYO5CQ9NQX4 1742 aa8.17□□□□□ -1.1
SMAD4-208ENST00000589706 ADH1AP07327 375 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 DNMT1P26358 1616 aaKnown RBP8.16□□□□□ -1.1
SMAD4-208ENST00000589706 POTEGQ6S5H5 508 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 ANKLE2Q86XL3 938 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 DMRTB1Q96MA1 342 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 PRXQ9BXM0 1461 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 USP35Q9P2H5 1018 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 LRFN2Q9ULH4 789 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 SRCAPQ6ZRS2 3230 aa8.16□□□□□ -1.1
SMAD4-208ENST00000589706 POLR1AO95602 1720 aaPredicted RBP8.15□□□□□ -1.1
SMAD4-208ENST00000589706 LRRC7Q96NW7 1537 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 A2ML1A8K2U0 1454 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 SERTM1A2A2V5 107 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 RECKO95980 971 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 SLC19A1P41440 591 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 PLCB3Q01970 1234 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 FMR1Q06787 632 aaKnown RBP eCLIP8.15□□□□□ -1.1
SMAD4-208ENST00000589706 TEAD4Q15561 434 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 NBPF15Q8N660 670 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 ABTB2Q8N961 1025 aa8.15□□□□□ -1.1
SMAD4-208ENST00000589706 RNF166Q96A37 237 aaPredicted RBP8.15□□□□□ -1.1
SMAD4-208ENST00000589706 CLTCQ00610 1675 aaKnown RBP8.14□□□□□ -1.11
SMAD4-208ENST00000589706 EML1O00423 815 aa8.14□□□□□ -1.11
SMAD4-208ENST00000589706 BRD2P25440 801 aaKnown RBP8.14□□□□□ -1.11
SMAD4-208ENST00000589706 HIRAP54198 1017 aaPredicted RBP8.14□□□□□ -1.11
SMAD4-208ENST00000589706 CLN3Q13286 438 aa8.14□□□□□ -1.11
SMAD4-208ENST00000589706 DSC3Q14574 896 aa8.14□□□□□ -1.11
SMAD4-208ENST00000589706 KDF1Q8NAX2 398 aaPredicted RBP8.14□□□□□ -1.11
SMAD4-208ENST00000589706 NGLY1Q96IV0 654 aa8.14□□□□□ -1.11
SMAD4-208ENST00000589706 PRKD2Q9BZL6 878 aa8.14□□□□□ -1.11
SMAD4-208ENST00000589706 RNF17Q9BXT8 1623 aaKnown RBP8.14□□□□□ -1.11
SMAD4-208ENST00000589706 ARHGAP5Q13017 1502 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 CDK13Q14004 1512 aaKnown RBP8.13□□□□□ -1.11
SMAD4-208ENST00000589706 ALDH1A1P00352 501 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 NOS2P35228 1153 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 CENPCQ03188 943 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 CBLBQ13191 982 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 PDE3BQ13370 1112 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 NNTQ13423 1086 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 TSNAXIP1Q2TAA8 658 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 FAM129BQ96TA1 746 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 CABP1Q9NZU7 370 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 ZNF232Q9UNY5 417 aa8.13□□□□□ -1.11
SMAD4-208ENST00000589706 STRCP1A6NGW2 1772 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 KIDINS220Q9ULH0 1771 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 ZBTB39O15060 712 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 IGHA2P01877 340 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 PTGIRP43119 386 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 MAPK8P45983 427 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 FGD1P98174 961 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 EHHADHQ08426 723 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 MRPL58Q14197 206 aaKnown RBP8.12□□□□□ -1.11
SMAD4-208ENST00000589706 SH3PXD2AQ5TCZ1 1133 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 ALDH16A1Q8IZ83 802 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 ZDHHC1Q8WTX9 485 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 FHDC1Q9C0D6 1143 aaPredicted RBP8.12□□□□□ -1.11
SMAD4-208ENST00000589706 HCN4Q9Y3Q4 1203 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 WASF2Q9Y6W5 498 aa8.12□□□□□ -1.11
SMAD4-208ENST00000589706 NPHP4O75161 1426 aaPredicted RBP8.12□□□□□ -1.11
SMAD4-208ENST00000589706 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.11□□□□□ -1.11
SMAD4-208ENST00000589706 LDHBP07195 334 aaKnown RBP8.11□□□□□ -1.11
SMAD4-208ENST00000589706 RTN1Q16799 776 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 C11orf91Q3C1V1 193 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 FAM26DQ5JW98 314 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 SPRYD7Q5W111 196 aa8.11□□□□□ -1.11
SMAD4-208ENST00000589706 DIEXFQ68CQ4 756 aaKnown RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms