RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 TCERG1O14776 1098 aaKnown RBP21.45■■□□□ 1.02
SREBF1-219ENST00000580540 ALDH1B1P30837 517 aa21.45■■□□□ 1.02
SREBF1-219ENST00000580540 RIC3Q7Z5B4 369 aa21.45■■□□□ 1.02
SREBF1-219ENST00000580540 CHMP4AQ9BY43 222 aa21.45■■□□□ 1.02
SREBF1-219ENST00000580540 TRMT112Q9UI30 125 aaKnown RBP21.45■■□□□ 1.02
SREBF1-219ENST00000580540 ATP5J2-PTCD1G3V325 749 aa21.44■■□□□ 1.02
SREBF1-219ENST00000580540 GOLGA2Q08379 1002 aa21.44■■□□□ 1.02
SREBF1-219ENST00000580540 SOGA3Q5TF21 947 aa21.44■■□□□ 1.02
SREBF1-219ENST00000580540 WDR63Q8IWG1 891 aa21.44■■□□□ 1.02
SREBF1-219ENST00000580540 NLRP3Q96P20 1036 aa21.44■■□□□ 1.02
SREBF1-219ENST00000580540 PRELPP51888 382 aa21.43■■□□□ 1.02
SREBF1-219ENST00000580540 C1QTNF8P60827 252 aa21.43■■□□□ 1.02
SREBF1-219ENST00000580540 TWISTNBQ3B726 338 aaPredicted RBP21.43■■□□□ 1.02
SREBF1-219ENST00000580540 TAOK3Q9H2K8 898 aa21.43■■□□□ 1.02
SREBF1-219ENST00000580540 TNRC6CQ9HCJ0 1690 aaKnown RBP21.43■■□□□ 1.02
SREBF1-219ENST00000580540 SBF1O95248 1867 aa21.43■■□□□ 1.02
SREBF1-219ENST00000580540 CRY2Q49AN0 593 aa21.42■■□□□ 1.02
SREBF1-219ENST00000580540 OLFM4Q6UX06 510 aa21.42■■□□□ 1.02
SREBF1-219ENST00000580540 C3orf67Q6ZVT6 689 aa21.42■■□□□ 1.02
SREBF1-219ENST00000580540 SYNE4Q8N205 404 aa21.42■■□□□ 1.02
SREBF1-219ENST00000580540 RBM17Q96I25 401 aaKnown RBP21.42■■□□□ 1.02
SREBF1-219ENST00000580540 STK31Q9BXU1 1019 aa21.42■■□□□ 1.02
SREBF1-219ENST00000580540 FANCIQ9NVI1 1328 aa21.41■■□□□ 1.02
SREBF1-219ENST00000580540 HCLS1P14317 486 aaPredicted RBP21.41■■□□□ 1.02
SREBF1-219ENST00000580540 CCDC93Q567U6 631 aa21.41■■□□□ 1.02
SREBF1-219ENST00000580540 SH3TC1Q8TE82 1336 aa21.4■■□□□ 1.02
SREBF1-219ENST00000580540 SLC10A5Q5PT55 438 aa21.4■■□□□ 1.02
SREBF1-219ENST00000580540 C7orf43Q8WVR3 580 aa21.4■■□□□ 1.02
SREBF1-219ENST00000580540 ISCA1Q9BUE6 129 aa21.4■■□□□ 1.02
SREBF1-219ENST00000580540 ANKRD36CQ5JPF3 1778 aa21.4■■□□□ 1.02
SREBF1-219ENST00000580540 DDX58O95786 925 aaKnown RBP21.39■■□□□ 1.01
SREBF1-219ENST00000580540 RTL5Q5HYW3 569 aaPredicted RBP21.39■■□□□ 1.01
SREBF1-219ENST00000580540 NMRK2Q9NPI5 230 aa21.39■■□□□ 1.01
SREBF1-219ENST00000580540 CCDC88AQ3V6T2 1871 aa21.39■■□□□ 1.01
SREBF1-219ENST00000580540 RIC1Q4ADV7 1423 aa21.38■■□□□ 1.01
SREBF1-219ENST00000580540 RNF123Q5XPI4 1314 aa21.38■■□□□ 1.01
SREBF1-219ENST00000580540 KDM2BQ8NHM5 1336 aa21.38■■□□□ 1.01
SREBF1-219ENST00000580540 HOXA10P31260 410 aaPredicted RBP21.38■■□□□ 1.01
SREBF1-219ENST00000580540 MYD88Q99836 296 aa21.38■■□□□ 1.01
SREBF1-219ENST00000580540 ARFGEF2Q9Y6D5 1785 aa21.38■■□□□ 1.01
SREBF1-219ENST00000580540 KIF3CO14782 793 aa21.37■■□□□ 1.01
SREBF1-219ENST00000580540 EXOSC9Q06265 439 aaKnown RBP21.37■■□□□ 1.01
SREBF1-219ENST00000580540 RTKN2Q8IZC4 609 aa21.37■■□□□ 1.01
SREBF1-219ENST00000580540 FAM89AQ96GI7 184 aa21.37■■□□□ 1.01
SREBF1-219ENST00000580540 CRAMP1Q96RY5 1269 aa21.37■■□□□ 1.01
SREBF1-219ENST00000580540 SPINK5Q9NQ38 1064 aaPredicted RBP21.37■■□□□ 1.01
SREBF1-219ENST00000580540 FER1L6Q2WGJ9 1857 aa21.37■■□□□ 1.01
SREBF1-219ENST00000580540 LTBP3Q9NS15 1303 aa21.36■■□□□ 1.01
SREBF1-219ENST00000580540 SLC4A2P04920 1241 aa21.36■■□□□ 1.01
SREBF1-219ENST00000580540 MYH16Q9H6N6 1097 aa21.36■■□□□ 1.01
SREBF1-219ENST00000580540 ZC3H4Q9UPT8 1303 aaKnown RBP21.35■■□□□ 1.01
SREBF1-219ENST00000580540 PPEF1O14829 653 aaPredicted RBP21.35■■□□□ 1.01
SREBF1-219ENST00000580540 FKBP4Q02790 459 aaKnown RBP eCLIP21.35■■□□□ 1.01
SREBF1-219ENST00000580540 RRAGCQ9HB90 399 aa21.35■■□□□ 1.01
SREBF1-219ENST00000580540 ZNF277Q9NRM2 450 aaPredicted RBP21.35■■□□□ 1.01
SREBF1-219ENST00000580540 MAP3K2Q9Y2U5 619 aa21.35■■□□□ 1.01
SREBF1-219ENST00000580540 G2E3Q7L622 706 aa21.34■■□□□ 1.01
SREBF1-219ENST00000580540 TMX4Q9H1E5 349 aaPredicted RBP21.34■■□□□ 1.01
SREBF1-219ENST00000580540 PI4KAP2A4QPH2 592 aa21.33■■□□□ 1.01
SREBF1-219ENST00000580540 GLTPD2A6NH11 291 aa21.33■■□□□ 1.01
SREBF1-219ENST00000580540 TRIM28Q13263 835 aaKnown RBP21.33■■□□□ 1.01
SREBF1-219ENST00000580540 KSR2Q6VAB6 950 aa21.33■■□□□ 1.01
SREBF1-219ENST00000580540 DDX46Q7L014 1031 aaKnown RBP21.33■■□□□ 1.01
SREBF1-219ENST00000580540 C16orf71Q8IYS4 520 aaPredicted RBP21.33■■□□□ 1.01
SREBF1-219ENST00000580540 PI4KAP1Q8N8J0 262 aa21.33■■□□□ 1.01
SREBF1-219ENST00000580540 METTL22Q9BUU2 404 aaPredicted RBP21.33■■□□□ 1.01
SREBF1-219ENST00000580540 ABCC4O15439 1325 aa21.32■■□□□ 1
SREBF1-219ENST00000580540 IRS4O14654 1257 aaPredicted RBP21.32■■□□□ 1
SREBF1-219ENST00000580540 VAMP4O75379 141 aa21.32■■□□□ 1
SREBF1-219ENST00000580540 CC2D2BQ6DHV5 1058 aa21.32■■□□□ 1
SREBF1-219ENST00000580540 DPY19L2Q6NUT2 758 aa21.32■■□□□ 1
SREBF1-219ENST00000580540 JARID2Q92833 1246 aaPredicted RBP21.32■■□□□ 1
SREBF1-219ENST00000580540 CCER2I3L3R5 266 aa21.31■■□□□ 1
SREBF1-219ENST00000580540 SLC51AQ86UW1 340 aa21.31■■□□□ 1
SREBF1-219ENST00000580540 CWC25Q9NXE8 425 aaPredicted RBP21.31■■□□□ 1
SREBF1-219ENST00000580540 TIAM2Q8IVF5 1701 aa21.3■■□□□ 1
SREBF1-219ENST00000580540 CCDC191Q8NCU4 936 aa21.3■■□□□ 1
SREBF1-219ENST00000580540 BBOX1O75936 387 aa21.29■■□□□ 1
SREBF1-219ENST00000580540 NEXNQ0ZGT2 675 aa21.29■■□□□ 1
SREBF1-219ENST00000580540 ZBTB38Q8NAP3 1195 aaPredicted RBP21.29■■□□□ 1
SREBF1-219ENST00000580540 TOMM70O94826 608 aa21.28■■□□□ 1
SREBF1-219ENST00000580540 IARSP41252 1262 aaKnown RBP21.28■■□□□ 1
SREBF1-219ENST00000580540 FLIIQ13045 1269 aa21.28■■□□□ 1
SREBF1-219ENST00000580540 FKBP5Q13451 457 aaPredicted RBP21.28■■□□□ 1
SREBF1-219ENST00000580540 GRAPQ13588 217 aa21.28■■□□□ 1
SREBF1-219ENST00000580540 GRAPLQ8TC17 118 aaPredicted RBP21.28■■□□□ 1
SREBF1-219ENST00000580540 ATP6V0A2Q9Y487 856 aa21.28■■□□□ 1
SREBF1-219ENST00000580540 LAMB2P55268 1798 aa21.28■■□□□ 1
SREBF1-219ENST00000580540 DICER1Q9UPY3 1922 aaKnown RBP21.27■■□□□ 1
SREBF1-219ENST00000580540 GRIPAP1Q4V328 841 aa21.27■■□□□ 1
SREBF1-219ENST00000580540 PSMD1Q99460 953 aa21.27■■□□□ 1
SREBF1-219ENST00000580540 ZNF521Q96K83 1311 aa21.27■□□□□ 0.99
SREBF1-219ENST00000580540 DDNO94850 711 aaPredicted RBP21.26■□□□□ 0.99
SREBF1-219ENST00000580540 PCCAP05165 728 aaPredicted RBP21.26■□□□□ 0.99
SREBF1-219ENST00000580540 HSP90B1P14625 803 aaKnown RBP21.26■□□□□ 0.99
SREBF1-219ENST00000580540 VEGFAP15692 232 aaPredicted RBP21.26■□□□□ 0.99
SREBF1-219ENST00000580540 SF3B3Q15393 1217 aaKnown RBP21.26■□□□□ 0.99
SREBF1-219ENST00000580540 IGKV5-2P06315 115 aa21.25■□□□□ 0.99
SREBF1-219ENST00000580540 CWF19L2Q2TBE0 894 aaKnown RBP21.25■□□□□ 0.99
SREBF1-219ENST00000580540 DIEXFQ68CQ4 756 aaKnown RBP21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms