RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CHMP4AQ9BY43 222 aa26.27■■□□□ 1.8
CLK3-225ENST00000569063 IL16Q14005 1332 aa26.27■■□□□ 1.8
CLK3-225ENST00000569063 RNF123Q5XPI4 1314 aa26.27■■□□□ 1.8
CLK3-225ENST00000569063 LTBP3Q9NS15 1303 aa26.27■■□□□ 1.8
CLK3-225ENST00000569063 FER1L6Q2WGJ9 1857 aa26.26■■□□□ 1.79
CLK3-225ENST00000569063 KIF3CO14782 793 aa26.26■■□□□ 1.79
CLK3-225ENST00000569063 SLC10A5Q5PT55 438 aa26.26■■□□□ 1.79
CLK3-225ENST00000569063 NLRP10Q86W26 655 aa26.26■■□□□ 1.79
CLK3-225ENST00000569063 ANKRD36CQ5JPF3 1778 aa26.25■■□□□ 1.79
CLK3-225ENST00000569063 HOXA10P31260 410 aaPredicted RBP26.25■■□□□ 1.79
CLK3-225ENST00000569063 TSR2Q969E8 191 aaKnown RBP26.25■■□□□ 1.79
CLK3-225ENST00000569063 CACNA1SQ13698 1873 aa26.25■■□□□ 1.79
CLK3-225ENST00000569063 TAOK3Q9H2K8 898 aa26.24■■□□□ 1.79
CLK3-225ENST00000569063 KDM2BQ8NHM5 1336 aa26.23■■□□□ 1.79
CLK3-225ENST00000569063 CCDC93Q567U6 631 aa26.23■■□□□ 1.79
CLK3-225ENST00000569063 FAM9BQ8IZU0 186 aa26.23■■□□□ 1.79
CLK3-225ENST00000569063 TSPYL6Q8N831 410 aa26.23■■□□□ 1.79
CLK3-225ENST00000569063 RPGRQ92834 1020 aaKnown RBP26.23■■□□□ 1.79
CLK3-225ENST00000569063 CCDC30Q5VVM6 783 aa26.22■■□□□ 1.79
CLK3-225ENST00000569063 WDR63Q8IWG1 891 aa26.22■■□□□ 1.79
CLK3-225ENST00000569063 NLRP3Q96P20 1036 aa26.22■■□□□ 1.79
CLK3-225ENST00000569063 C3orf67Q6ZVT6 689 aa26.21■■□□□ 1.79
CLK3-225ENST00000569063 ISCA1Q9BUE6 129 aa26.21■■□□□ 1.79
CLK3-225ENST00000569063 NMRK2Q9NPI5 230 aa26.21■■□□□ 1.79
CLK3-225ENST00000569063 RTKN2Q8IZC4 609 aa26.2■■□□□ 1.78
CLK3-225ENST00000569063 RBM17Q96I25 401 aaKnown RBP26.2■■□□□ 1.78
CLK3-225ENST00000569063 CRAMP1Q96RY5 1269 aa26.2■■□□□ 1.78
CLK3-225ENST00000569063 PHAXQ9H814 394 aaKnown RBP26.2■■□□□ 1.78
CLK3-225ENST00000569063 TRMT112Q9UI30 125 aaKnown RBP26.2■■□□□ 1.78
CLK3-225ENST00000569063 CCDC88AQ3V6T2 1871 aa26.19■■□□□ 1.78
CLK3-225ENST00000569063 SH3TC1Q8TE82 1336 aa26.18■■□□□ 1.78
CLK3-225ENST00000569063 GLTPD2A6NH11 291 aa26.18■■□□□ 1.78
CLK3-225ENST00000569063 GOLGA2Q08379 1002 aa26.18■■□□□ 1.78
CLK3-225ENST00000569063 TRIM28Q13263 835 aaKnown RBP26.18■■□□□ 1.78
CLK3-225ENST00000569063 OLFM4Q6UX06 510 aa26.18■■□□□ 1.78
CLK3-225ENST00000569063 SALL2Q9Y467 1007 aaPredicted RBP26.18■■□□□ 1.78
CLK3-225ENST00000569063 FKBP4Q02790 459 aaKnown RBP eCLIP26.17■■□□□ 1.78
CLK3-225ENST00000569063 RIC3Q7Z5B4 369 aa26.17■■□□□ 1.78
CLK3-225ENST00000569063 TIAM2Q8IVF5 1701 aa26.17■■□□□ 1.78
CLK3-225ENST00000569063 ATP5J2-PTCD1G3V325 749 aa26.16■■□□□ 1.78
CLK3-225ENST00000569063 TWISTNBQ3B726 338 aaPredicted RBP26.16■■□□□ 1.78
CLK3-225ENST00000569063 CC2D2BQ6DHV5 1058 aa26.16■■□□□ 1.78
CLK3-225ENST00000569063 SYNE4Q8N205 404 aa26.16■■□□□ 1.78
CLK3-225ENST00000569063 DICER1Q9UPY3 1922 aaKnown RBP26.16■■□□□ 1.78
CLK3-225ENST00000569063 TOMM70O94826 608 aa26.15■■□□□ 1.78
CLK3-225ENST00000569063 HCLS1P14317 486 aaPredicted RBP26.15■■□□□ 1.78
CLK3-225ENST00000569063 FANCIQ9NVI1 1328 aa26.14■■□□□ 1.78
CLK3-225ENST00000569063 SNED1Q8TER0 1413 aa26.14■■□□□ 1.78
CLK3-225ENST00000569063 GRIPAP1Q4V328 841 aa26.14■■□□□ 1.78
CLK3-225ENST00000569063 RRAGCQ9HB90 399 aa26.14■■□□□ 1.78
CLK3-225ENST00000569063 DDX58O95786 925 aaKnown RBP26.13■■□□□ 1.77
CLK3-225ENST00000569063 STK31Q9BXU1 1019 aa26.13■■□□□ 1.77
CLK3-225ENST00000569063 PPEF1O14829 653 aaPredicted RBP26.12■■□□□ 1.77
CLK3-225ENST00000569063 DPY19L2Q6NUT2 758 aa26.12■■□□□ 1.77
CLK3-225ENST00000569063 PSMD1Q99460 953 aa26.12■■□□□ 1.77
CLK3-225ENST00000569063 ZNF428Q96B54 188 aa26.11■■□□□ 1.77
CLK3-225ENST00000569063 FAM89AQ96GI7 184 aa26.11■■□□□ 1.77
CLK3-225ENST00000569063 ABCC4O15439 1325 aa26.11■■□□□ 1.77
CLK3-225ENST00000569063 ZNF277Q9NRM2 450 aaPredicted RBP26.1■■□□□ 1.77
CLK3-225ENST00000569063 LAMB2P55268 1798 aa26.1■■□□□ 1.77
CLK3-225ENST00000569063 BBOX1O75936 387 aa26.09■■□□□ 1.77
CLK3-225ENST00000569063 C16orf71Q8IYS4 520 aaPredicted RBP26.09■■□□□ 1.77
CLK3-225ENST00000569063 MYD88Q99836 296 aa26.09■■□□□ 1.77
CLK3-225ENST00000569063 METTL22Q9BUU2 404 aaPredicted RBP26.09■■□□□ 1.77
CLK3-225ENST00000569063 SPINK5Q9NQ38 1064 aaPredicted RBP26.09■■□□□ 1.77
CLK3-225ENST00000569063 TCERG1O14776 1098 aaKnown RBP26.08■■□□□ 1.77
CLK3-225ENST00000569063 VEGFAP15692 232 aaPredicted RBP26.08■■□□□ 1.77
CLK3-225ENST00000569063 KSR2Q6VAB6 950 aa26.08■■□□□ 1.77
CLK3-225ENST00000569063 ZBTB38Q8NAP3 1195 aaPredicted RBP26.08■■□□□ 1.77
CLK3-225ENST00000569063 CCDC191Q8NCU4 936 aa26.08■■□□□ 1.77
CLK3-225ENST00000569063 RBM46Q8TBY0 533 aaKnown RBP26.08■■□□□ 1.77
CLK3-225ENST00000569063 ATP6V0A2Q9Y487 856 aa26.08■■□□□ 1.77
CLK3-225ENST00000569063 VAMP4O75379 141 aa26.07■■□□□ 1.76
CLK3-225ENST00000569063 SLC4A2P04920 1241 aa26.07■■□□□ 1.76
CLK3-225ENST00000569063 IARSP41252 1262 aaKnown RBP26.07■■□□□ 1.76
CLK3-225ENST00000569063 SF3B3Q15393 1217 aaKnown RBP26.07■■□□□ 1.76
CLK3-225ENST00000569063 DDX46Q7L014 1031 aaKnown RBP26.07■■□□□ 1.76
CLK3-225ENST00000569063 MAP3K2Q9Y2U5 619 aa26.07■■□□□ 1.76
CLK3-225ENST00000569063 DDX60Q8IY21 1712 aaKnown RBP26.07■■□□□ 1.76
CLK3-225ENST00000569063 EXOSC9Q06265 439 aaKnown RBP26.06■■□□□ 1.76
CLK3-225ENST00000569063 MYH16Q9H6N6 1097 aa26.06■■□□□ 1.76
CLK3-225ENST00000569063 PI4KAP2A4QPH2 592 aa26.05■■□□□ 1.76
CLK3-225ENST00000569063 IRS4O14654 1257 aaPredicted RBP26.05■■□□□ 1.76
CLK3-225ENST00000569063 HSPA6P17066 643 aa26.05■■□□□ 1.76
CLK3-225ENST00000569063 GRAPQ13588 217 aa26.05■■□□□ 1.76
CLK3-225ENST00000569063 PI4KAP1Q8N8J0 262 aa26.05■■□□□ 1.76
CLK3-225ENST00000569063 GRAPLQ8TC17 118 aaPredicted RBP26.05■■□□□ 1.76
CLK3-225ENST00000569063 TMX4Q9H1E5 349 aaPredicted RBP26.05■■□□□ 1.76
CLK3-225ENST00000569063 ZNF521Q96K83 1311 aa26.05■■□□□ 1.76
CLK3-225ENST00000569063 WDR90Q96KV7 1748 aa26.05■■□□□ 1.76
CLK3-225ENST00000569063 POTECB2RU33 542 aa26.04■■□□□ 1.76
CLK3-225ENST00000569063 RTL5Q5HYW3 569 aaPredicted RBP26.04■■□□□ 1.76
CLK3-225ENST00000569063 G2E3Q7L622 706 aa26.04■■□□□ 1.76
CLK3-225ENST00000569063 SLC51AQ86UW1 340 aa26.04■■□□□ 1.76
CLK3-225ENST00000569063 SP8Q8IXZ3 490 aa26.04■■□□□ 1.76
CLK3-225ENST00000569063 CWC25Q9NXE8 425 aaPredicted RBP26.04■■□□□ 1.76
CLK3-225ENST00000569063 DDNO94850 711 aaPredicted RBP26.03■■□□□ 1.76
CLK3-225ENST00000569063 PCCAP05165 728 aaPredicted RBP26.03■■□□□ 1.76
CLK3-225ENST00000569063 HSP90B1P14625 803 aaKnown RBP26.03■■□□□ 1.76
CLK3-225ENST00000569063 FZD9O00144 591 aa26.02■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms