RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 KIAA1211Q6ZU35 1233 aa24.55■■□□□ 1.52
CLN3-230ENST00000568076 RUFY2Q8WXA3 655 aa24.55■■□□□ 1.52
CLN3-230ENST00000568076 BOLA2Q9H3K6 86 aa24.55■■□□□ 1.52
CLN3-230ENST00000568076 TMOD3Q9NYL9 352 aa24.55■■□□□ 1.52
CLN3-230ENST00000568076 ZDHHC9Q9Y397 364 aa24.55■■□□□ 1.52
CLN3-230ENST00000568076 PTH1RQ03431 593 aa24.54■■□□□ 1.52
CLN3-230ENST00000568076 NOL8Q76FK4 1167 aaKnown RBP24.54■■□□□ 1.52
CLN3-230ENST00000568076 ZBTB3Q9H5J0 574 aa24.54■■□□□ 1.52
CLN3-230ENST00000568076 TJP1Q07157 1748 aa24.54■■□□□ 1.52
CLN3-230ENST00000568076 TFCP2Q12800 502 aa24.54■■□□□ 1.52
CLN3-230ENST00000568076 LMBR1LQ6UX01 489 aa24.54■■□□□ 1.52
CLN3-230ENST00000568076 BRPF3Q9ULD4 1205 aa24.54■■□□□ 1.52
CLN3-230ENST00000568076 CWC25Q9NXE8 425 aaPredicted RBP24.53■■□□□ 1.52
CLN3-230ENST00000568076 TNNI3KQ59H18 835 aa24.53■■□□□ 1.52
CLN3-230ENST00000568076 PIGBQ92521 554 aa24.53■■□□□ 1.52
CLN3-230ENST00000568076 FPGT-TNNI3KV9GXZ4 949 aa24.53■■□□□ 1.52
CLN3-230ENST00000568076 FAM227BQ96M60 508 aa24.52■■□□□ 1.52
CLN3-230ENST00000568076 DBNLQ9UJU6 430 aaKnown RBP24.52■■□□□ 1.52
CLN3-230ENST00000568076 ASAP1Q9ULH1 1129 aa24.52■■□□□ 1.52
CLN3-230ENST00000568076 DISP2A7MBM2 1401 aa24.51■■□□□ 1.51
CLN3-230ENST00000568076 FSD2A1L4K1 749 aa24.51■■□□□ 1.51
CLN3-230ENST00000568076 PTMSP20962 102 aa24.51■■□□□ 1.51
CLN3-230ENST00000568076 TTC14Q96N46 770 aa24.51■■□□□ 1.51
CLN3-230ENST00000568076 NMIQ13287 307 aaPredicted RBP24.5■■□□□ 1.51
CLN3-230ENST00000568076 CCDC191Q8NCU4 936 aa24.49■■□□□ 1.51
CLN3-230ENST00000568076 INTS4Q96HW7 963 aaKnown RBP24.49■■□□□ 1.51
CLN3-230ENST00000568076 COL14A1Q05707 1796 aaKnown RBP24.49■■□□□ 1.51
CLN3-230ENST00000568076 ROBO1Q9Y6N7 1651 aa24.49■■□□□ 1.51
CLN3-230ENST00000568076 SKOR2Q2VWA4 1001 aaPredicted RBP24.49■■□□□ 1.51
CLN3-230ENST00000568076 SNRKQ9NRH2 765 aa24.49■■□□□ 1.51
CLN3-230ENST00000568076 ATG3Q9NT62 314 aa24.49■■□□□ 1.51
CLN3-230ENST00000568076 HIP1O00291 1037 aa24.48■■□□□ 1.51
CLN3-230ENST00000568076 DNAJC10Q8IXB1 793 aa24.48■■□□□ 1.51
CLN3-230ENST00000568076 IL27Q8NEV9 243 aa24.48■■□□□ 1.51
CLN3-230ENST00000568076 KCNB2Q92953 911 aa24.48■■□□□ 1.51
CLN3-230ENST00000568076 CCDC171Q6TFL3 1326 aa24.48■■□□□ 1.51
CLN3-230ENST00000568076 GOLGA6L22H0YM25 854 aa24.47■■□□□ 1.51
CLN3-230ENST00000568076 ATP5JP18859 108 aa24.47■■□□□ 1.51
CLN3-230ENST00000568076 EDC3Q96F86 508 aaKnown RBP24.47■■□□□ 1.51
CLN3-230ENST00000568076 FSD1Q9BTV5 496 aa24.47■■□□□ 1.51
CLN3-230ENST00000568076 A0A0D9SFI3 127 aa24.47■■□□□ 1.51
CLN3-230ENST00000568076 CHMP3Q9Y3E7 222 aa24.47■■□□□ 1.51
CLN3-230ENST00000568076 COL16A1Q07092 1604 aaPredicted RBP24.47■■□□□ 1.51
CLN3-230ENST00000568076 GOLGA6L3A6NEY3 463 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 NECTIN1Q15223 517 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 L1TD1Q5T7N2 865 aaKnown RBP24.46■■□□□ 1.51
CLN3-230ENST00000568076 MCTP1Q6DN14 999 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 PRPF40BQ6NWY9 871 aaKnown RBP24.46■■□□□ 1.51
CLN3-230ENST00000568076 ATG9AQ7Z3C6 839 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 VSIG10Q8N0Z9 540 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 DBNDD2Q9BQY9 259 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 ISCA1Q9BUE6 129 aa24.46■■□□□ 1.51
CLN3-230ENST00000568076 ITGB4P16144 1822 aa24.45■■□□□ 1.5
CLN3-230ENST00000568076 CPA1P15085 419 aa24.45■■□□□ 1.5
CLN3-230ENST00000568076 ADCK5Q3MIX3 580 aa24.45■■□□□ 1.5
CLN3-230ENST00000568076 AK2P54819 239 aa24.44■■□□□ 1.5
CLN3-230ENST00000568076 MAP4K1Q92918 833 aa24.44■■□□□ 1.5
CLN3-230ENST00000568076 AHDC1Q5TGY3 1603 aaPredicted RBP24.44■■□□□ 1.5
CLN3-230ENST00000568076 COL22A1Q8NFW1 1626 aaPredicted RBP24.44■■□□□ 1.5
CLN3-230ENST00000568076 MED23Q9ULK4 1368 aa24.44■■□□□ 1.5
CLN3-230ENST00000568076 TCIRG1Q13488 830 aa24.43■■□□□ 1.5
CLN3-230ENST00000568076 RUFY3Q7L099 469 aa24.43■■□□□ 1.5
CLN3-230ENST00000568076 ARXQ96QS3 562 aa24.43■■□□□ 1.5
CLN3-230ENST00000568076 ZNF330Q9Y3S2 320 aaPredicted RBP24.43■■□□□ 1.5
CLN3-230ENST00000568076 RBM8AQ9Y5S9 174 aaKnown RBP24.43■■□□□ 1.5
CLN3-230ENST00000568076 NDUFB9Q9Y6M9 179 aa24.43■■□□□ 1.5
CLN3-230ENST00000568076 BRD1O95696 1058 aa24.43■■□□□ 1.5
CLN3-230ENST00000568076 CASTP20810 708 aaKnown RBP24.43■■□□□ 1.5
CLN3-230ENST00000568076 TEX13AQ9BXU3 409 aaPredicted RBP24.43■■□□□ 1.5
CLN3-230ENST00000568076 LMBRD1Q9NUN5 540 aa24.43■■□□□ 1.5
CLN3-230ENST00000568076 CHAMP1Q96JM3 812 aa24.42■■□□□ 1.5
CLN3-230ENST00000568076 BCL9O00512 1426 aa24.42■■□□□ 1.5
CLN3-230ENST00000568076 SLC4A9Q96Q91 983 aa24.42■■□□□ 1.5
CLN3-230ENST00000568076 PLCH1Q4KWH8 1693 aa24.41■■□□□ 1.5
CLN3-230ENST00000568076 XRCC6P12956 609 aaKnown RBP eCLIP24.41■■□□□ 1.5
CLN3-230ENST00000568076 CREB3L3Q68CJ9 461 aa24.41■■□□□ 1.5
CLN3-230ENST00000568076 ZNF589Q86UQ0 364 aaPredicted RBP24.41■■□□□ 1.5
CLN3-230ENST00000568076 ZNF594Q96JF6 807 aaPredicted RBP24.41■■□□□ 1.5
CLN3-230ENST00000568076 JAKMIP1Q96N16 626 aaKnown RBP24.41■■□□□ 1.5
CLN3-230ENST00000568076 LARP6Q9BRS8 491 aaKnown RBP24.41■■□□□ 1.5
CLN3-230ENST00000568076 KLHL40Q2TBA0 621 aa24.4■■□□□ 1.5
CLN3-230ENST00000568076 FOXD4L5Q5VV16 416 aaPredicted RBP24.4■■□□□ 1.5
CLN3-230ENST00000568076 FOXD4L4Q8WXT5 416 aaPredicted RBP24.4■■□□□ 1.5
CLN3-230ENST00000568076 TM6SF1Q9BZW5 370 aa24.4■■□□□ 1.5
CLN3-230ENST00000568076 ZSWIM6Q9HCJ5 1215 aa24.4■■□□□ 1.5
CLN3-230ENST00000568076 LRRC24Q50LG9 513 aa24.4■■□□□ 1.5
CLN3-230ENST00000568076 HAUS7Q99871 368 aa24.4■■□□□ 1.5
CLN3-230ENST00000568076 JCADQ9P266 1359 aa24.39■■□□□ 1.5
CLN3-230ENST00000568076 STARD3NLO95772 234 aa24.39■■□□□ 1.49
CLN3-230ENST00000568076 IL15P40933 162 aaPredicted RBP24.39■■□□□ 1.49
CLN3-230ENST00000568076 TRIM28Q13263 835 aaKnown RBP24.39■■□□□ 1.49
CLN3-230ENST00000568076 LIMCH1Q9UPQ0 1083 aa24.39■■□□□ 1.49
CLN3-230ENST00000568076 DDX49Q9Y6V7 483 aaKnown RBP24.39■■□□□ 1.49
CLN3-230ENST00000568076 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.39■■□□□ 1.49
CLN3-230ENST00000568076 LRP6O75581 1613 aa24.38■■□□□ 1.49
CLN3-230ENST00000568076 EYA2O00167 538 aa24.38■■□□□ 1.49
CLN3-230ENST00000568076 SLC27A2O14975 620 aa24.38■■□□□ 1.49
CLN3-230ENST00000568076 CHGBP05060 677 aa24.38■■□□□ 1.49
CLN3-230ENST00000568076 KIF6Q6ZMV9 814 aa24.38■■□□□ 1.49
CLN3-230ENST00000568076 DNAJC2Q99543 621 aaKnown RBP24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms