RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 BICC1Q9H694 974 aaKnown RBP12.79□□□□□ -0.36
USP3-219ENST00000561326 NARFQ9UHQ1 456 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 BCORQ6W2J9 1755 aa12.79□□□□□ -0.36
USP3-219ENST00000561326 PNMA6EA0A0J9YXQ4 647 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 RAB11FIP3O75154 756 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 GPTP24298 496 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 SF3B2Q13435 895 aaKnown RBP12.78□□□□□ -0.36
USP3-219ENST00000561326 POLA2Q14181 598 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 NLRP10Q86W26 655 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 CHD1LQ86WJ1 897 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 LRRC4BQ9NT99 713 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 TRMT112Q9UI30 125 aaKnown RBP12.78□□□□□ -0.36
USP3-219ENST00000561326 UBR3Q6ZT12 1888 aa12.78□□□□□ -0.36
USP3-219ENST00000561326 RGPD3A6NKT7 1758 aaPredicted RBP12.77□□□□□ -0.36
USP3-219ENST00000561326 RGPD4Q7Z3J3 1758 aa12.77□□□□□ -0.36
USP3-219ENST00000561326 SURF6O75683 361 aaKnown RBP12.77□□□□□ -0.37
USP3-219ENST00000561326 RGS3P49796 1198 aa12.77□□□□□ -0.37
USP3-219ENST00000561326 CASP7P55210 303 aa12.77□□□□□ -0.37
USP3-219ENST00000561326 UTP14AQ9BVJ6 771 aaKnown RBP12.77□□□□□ -0.37
USP3-219ENST00000561326 NIP7Q9Y221 180 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP3-219ENST00000561326 SSFA2P28290 1259 aa12.76□□□□□ -0.37
USP3-219ENST00000561326 OS9Q13438 667 aaPredicted RBP12.76□□□□□ -0.37
USP3-219ENST00000561326 RABL6Q3YEC7 729 aaPredicted RBP12.76□□□□□ -0.37
USP3-219ENST00000561326 RTL5Q5HYW3 569 aaPredicted RBP12.76□□□□□ -0.37
USP3-219ENST00000561326 ERC1Q8IUD2 1116 aa12.76□□□□□ -0.37
USP3-219ENST00000561326 JARID2Q92833 1246 aaPredicted RBP12.76□□□□□ -0.37
USP3-219ENST00000561326 ARHGEF1Q92888 912 aaKnown RBP12.76□□□□□ -0.37
USP3-219ENST00000561326 KAZALD1Q96I82 304 aa12.76□□□□□ -0.37
USP3-219ENST00000561326 LNPKQ9C0E8 428 aa12.76□□□□□ -0.37
USP3-219ENST00000561326 CDHR2Q9BYE9 1310 aa12.76□□□□□ -0.37
USP3-219ENST00000561326 EP400Q96L91 3159 aa12.76□□□□□ -0.37
USP3-219ENST00000561326 TNS1Q9HBL0 1735 aaKnown RBP12.76□□□□□ -0.37
USP3-219ENST00000561326 G3BP1Q13283 466 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP3-219ENST00000561326 LMBR1LQ6UX01 489 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 PROM2Q8N271 834 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 FLAD1Q8NFF5 587 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 FAM89AQ96GI7 184 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 SETDB2Q96T68 719 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 PLA2G12BQ9BX93 195 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 LRRCC1Q9C099 1032 aa12.75□□□□□ -0.37
USP3-219ENST00000561326 NOP58Q9Y2X3 529 aaKnown RBP12.75□□□□□ -0.37
USP3-219ENST00000561326 SH3TC1Q8TE82 1336 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 APBB1O00213 710 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 PDE8AO60658 829 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 FOXO4P98177 505 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 USPL1Q5W0Q7 1092 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 NYXQ9GZU5 481 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 EXOC6BQ9Y2D4 811 aa12.74□□□□□ -0.37
USP3-219ENST00000561326 SCN7AQ01118 1682 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.73□□□□□ -0.37
USP3-219ENST00000561326 IRS4O14654 1257 aaPredicted RBP12.73□□□□□ -0.37
USP3-219ENST00000561326 PHF14O94880 888 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 GTF2E1P29083 439 aaPredicted RBP12.73□□□□□ -0.37
USP3-219ENST00000561326 CCDC57Q2TAC2 916 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 EPHA10Q5JZY3 1008 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 CCDC125Q86Z20 511 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 KIF1BPQ96EK5 621 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 CHMP3Q9Y3E7 222 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 C4AP0C0L4 1744 aa12.73□□□□□ -0.37
USP3-219ENST00000561326 UBN2Q6ZU65 1347 aa12.72□□□□□ -0.37
USP3-219ENST00000561326 USP42Q9H9J4 1324 aaKnown RBP12.72□□□□□ -0.37
USP3-219ENST00000561326 BAG6P46379 1132 aa12.72□□□□□ -0.37
USP3-219ENST00000561326 SUSD4Q5VX71 490 aa12.72□□□□□ -0.37
USP3-219ENST00000561326 TPTE2Q6XPS3 522 aa12.72□□□□□ -0.37
USP3-219ENST00000561326 COPRSQ9NQ92 184 aa12.72□□□□□ -0.37
USP3-219ENST00000561326 FAM177BA6PVY3 158 aa12.71□□□□□ -0.37
USP3-219ENST00000561326 CSF1RP07333 972 aa12.71□□□□□ -0.37
USP3-219ENST00000561326 IFIT5Q13325 482 aaKnown RBP12.71□□□□□ -0.37
USP3-219ENST00000561326 BICDL1Q6ZP65 573 aa12.71□□□□□ -0.37
USP3-219ENST00000561326 RHPN1Q8TCX5 695 aa12.71□□□□□ -0.37
USP3-219ENST00000561326 SRP68Q9UHB9 627 aaKnown RBP12.71□□□□□ -0.37
USP3-219ENST00000561326 NPHP1O15259 732 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 SMARCA5O60264 1052 aaPredicted RBP12.7□□□□□ -0.38
USP3-219ENST00000561326 PDE4AP27815 886 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 TAF7LQ5H9L4 462 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 TBC1D9BQ66K14 1250 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 SMIM5Q71RC9 77 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 SKAP1Q86WV1 359 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 CLASRPQ8N2M8 674 aaKnown RBP12.7□□□□□ -0.38
USP3-219ENST00000561326 BCL11AQ9H165 835 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 FBXO3Q9UK99 471 aa12.7□□□□□ -0.38
USP3-219ENST00000561326 LAMB2P55268 1798 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 MSH5O43196 834 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 NTSR2O95665 410 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 CTSWP56202 376 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 PTPN12Q05209 780 aaKnown RBP12.69□□□□□ -0.38
USP3-219ENST00000561326 EN1Q05925 392 aaPredicted RBP12.69□□□□□ -0.38
USP3-219ENST00000561326 NBPF5PQ86XG9 351 aaPredicted RBP12.69□□□□□ -0.38
USP3-219ENST00000561326 TTLL11Q8NHH1 800 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 AKT1S1Q96B36 256 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 CAMKK2Q96RR4 588 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 BCL2L12Q9HB09 334 aa12.69□□□□□ -0.38
USP3-219ENST00000561326 PA2G4Q9UQ80 394 aaKnown RBP12.69□□□□□ -0.38
USP3-219ENST00000561326 ANKRD18BA2A2Z9 1011 aa12.68□□□□□ -0.38
USP3-219ENST00000561326 RFX5P48382 616 aaPredicted RBP12.68□□□□□ -0.38
USP3-219ENST00000561326 CCDC152Q4G0S7 254 aa12.68□□□□□ -0.38
USP3-219ENST00000561326 SLC10A5Q5PT55 438 aa12.68□□□□□ -0.38
USP3-219ENST00000561326 SYNE4Q8N205 404 aa12.68□□□□□ -0.38
USP3-219ENST00000561326 NLGN1Q8N2Q7 840 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms