RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 KLRG2A4D1S0 409 aaPredicted RBP13.22□□□□□ -0.29
USP3-207ENST00000558218 PIP4K2AP48426 406 aaPredicted RBP13.22□□□□□ -0.29
USP3-207ENST00000558218 PDAP1Q13442 181 aaKnown RBP13.22□□□□□ -0.29
USP3-207ENST00000558218 STYK1Q6J9G0 422 aa13.22□□□□□ -0.29
USP3-207ENST00000558218 CNKSR1Q969H4 720 aa13.22□□□□□ -0.29
USP3-207ENST00000558218 NIP7Q9Y221 180 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP3-207ENST00000558218 LAMB4A4D0S4 1761 aa13.22□□□□□ -0.29
USP3-207ENST00000558218 BCORQ6W2J9 1755 aa13.22□□□□□ -0.29
USP3-207ENST00000558218 MAP3K15Q6ZN16 1313 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 ZC3H4Q9UPT8 1303 aaKnown RBP13.21□□□□□ -0.29
USP3-207ENST00000558218 SEC24BO95487 1268 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 SRGNP10124 158 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 NEUROD2Q15784 382 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 KIF6Q6ZMV9 814 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 CCDC146Q8IYE0 955 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 MASTLQ96GX5 879 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 RRP7AQ9Y3A4 280 aaKnown RBP13.21□□□□□ -0.29
USP3-207ENST00000558218 DLEC1Q9Y238 1755 aa13.21□□□□□ -0.29
USP3-207ENST00000558218 ZNF316A6NFI3 1004 aaPredicted RBP13.2□□□□□ -0.3
USP3-207ENST00000558218 HOXB7P09629 217 aa13.2□□□□□ -0.3
USP3-207ENST00000558218 CALD1Q05682 793 aaKnown RBP13.2□□□□□ -0.3
USP3-207ENST00000558218 SOGA3Q5TF21 947 aa13.2□□□□□ -0.3
USP3-207ENST00000558218 C9orf131Q5VYM1 1079 aa13.2□□□□□ -0.3
USP3-207ENST00000558218 ZNF622Q969S3 477 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP3-207ENST00000558218 CFAP44Q96MT7 982 aa13.2□□□□□ -0.3
USP3-207ENST00000558218 NYXQ9GZU5 481 aa13.2□□□□□ -0.3
USP3-207ENST00000558218 PLSCR2Q9NRY7 297 aa13.2□□□□□ -0.3
USP3-207ENST00000558218 RIOK3O14730 519 aaKnown RBP13.19□□□□□ -0.3
USP3-207ENST00000558218 LMNB1P20700 586 aa13.19□□□□□ -0.3
USP3-207ENST00000558218 HLFQ16534 295 aa13.19□□□□□ -0.3
USP3-207ENST00000558218 MYL6BP14649 208 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 NPR1P16066 1061 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 GTF2E1P29083 439 aaPredicted RBP13.18□□□□□ -0.3
USP3-207ENST00000558218 PDIA6Q15084 440 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 GIGYF2Q6Y7W6 1299 aaKnown RBP13.18□□□□□ -0.3
USP3-207ENST00000558218 LRP10Q7Z4F1 713 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 NGEFQ8N5V2 710 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 CHMP4AQ9BY43 222 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 SBF1O95248 1867 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 ANKRD31Q8N7Z5 1873 aa13.18□□□□□ -0.3
USP3-207ENST00000558218 KDM2BQ8NHM5 1336 aa13.17□□□□□ -0.3
USP3-207ENST00000558218 EIF2S2P20042 333 aaKnown RBP13.17□□□□□ -0.3
USP3-207ENST00000558218 ALDH1B1P30837 517 aa13.17□□□□□ -0.3
USP3-207ENST00000558218 GOLGA2Q08379 1002 aa13.17□□□□□ -0.3
USP3-207ENST00000558218 TTLL7Q6ZT98 887 aa13.17□□□□□ -0.3
USP3-207ENST00000558218 ZNF34Q8IZ26 560 aa13.17□□□□□ -0.3
USP3-207ENST00000558218 DDX21Q9NR30 783 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP3-207ENST00000558218 RNF181Q9P0P0 153 aa13.17□□□□□ -0.3
USP3-207ENST00000558218 IBTKQ9P2D0 1353 aaPredicted RBP13.17□□□□□ -0.3
USP3-207ENST00000558218 LTBP3Q9NS15 1303 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 NUP98P52948 1817 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 APAF1O14727 1248 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 KIF3CO14782 793 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 ZNF853P0CG23 659 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 POTEJP0CG39 1038 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 PARP10Q53GL7 1025 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 HSP90AB3PQ58FF7 597 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 CCDC24Q8N4L8 307 aa13.16□□□□□ -0.3
USP3-207ENST00000558218 ZNF526Q8TF50 670 aaPredicted RBP13.16□□□□□ -0.3
USP3-207ENST00000558218 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.15□□□□□ -0.3
USP3-207ENST00000558218 C21orf2O43822 256 aa13.15□□□□□ -0.3
USP3-207ENST00000558218 TOMM70O94826 608 aa13.15□□□□□ -0.3
USP3-207ENST00000558218 GNAI1P63096 354 aa13.15□□□□□ -0.3
USP3-207ENST00000558218 PPP1R42Q7Z4L9 355 aa13.15□□□□□ -0.3
USP3-207ENST00000558218 ZFP91Q96JP5 570 aaPredicted RBP13.15□□□□□ -0.3
USP3-207ENST00000558218 IFT57Q9NWB7 429 aa13.15□□□□□ -0.3
USP3-207ENST00000558218 RNF123Q5XPI4 1314 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 ANP32CO43423 234 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 CRY2Q49AN0 593 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 GRIPAP1Q4V328 841 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 SLC10A5Q5PT55 438 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 CC2D2BQ6DHV5 1058 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 PRPF40BQ6NWY9 871 aaKnown RBP13.14□□□□□ -0.31
USP3-207ENST00000558218 COPS6Q7L5N1 327 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 C7orf43Q8WVR3 580 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 ZBTB3Q9H5J0 574 aa13.14□□□□□ -0.31
USP3-207ENST00000558218 DBF4Q9UBU7 674 aaPredicted RBP13.14□□□□□ -0.31
USP3-207ENST00000558218 LAS1LQ9Y4W2 734 aaKnown RBP13.14□□□□□ -0.31
USP3-207ENST00000558218 RIC1Q4ADV7 1423 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 GLTPD2A6NH11 291 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 NFKBIEO00221 500 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 HOXA10P31260 410 aaPredicted RBP13.13□□□□□ -0.31
USP3-207ENST00000558218 CCDC27Q2M243 656 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 SUSD4Q5VX71 490 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 DPY19L2Q6NUT2 758 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 RTKN2Q8IZC4 609 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 TAOK3Q9H2K8 898 aa13.13□□□□□ -0.31
USP3-207ENST00000558218 SENP3-EIF4A1A0A087X0R7 540 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 RASSF7Q02833 373 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 MKRN3Q13064 507 aaKnown RBP13.12□□□□□ -0.31
USP3-207ENST00000558218 TCIRG1Q13488 830 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 HDGFL1Q5TGJ6 251 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 DUSP27Q5VZP5 1158 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 MBIPQ9NS73 344 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 HYPKQ9NX55 129 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 FER1L6Q2WGJ9 1857 aa13.12□□□□□ -0.31
USP3-207ENST00000558218 SLX4Q8IY92 1834 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 FAM177BA6PVY3 158 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 PLCG2P16885 1265 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 PROSER3Q2NL68 480 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms