RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 SPON1Q9HCB6 807 aa21.75■■□□□ 1.07
SHOX-204ENST00000554971 DDX58O95786 925 aaKnown RBP21.74■■□□□ 1.07
SHOX-204ENST00000554971 GPTP24298 496 aa21.74■■□□□ 1.07
SHOX-204ENST00000554971 NOB1Q9ULX3 412 aaKnown RBP21.74■■□□□ 1.07
SHOX-204ENST00000554971 NIP7Q9Y221 180 aaKnown RBP eCLIP21.74■■□□□ 1.07
SHOX-204ENST00000554971 LRP5O75197 1615 aa21.74■■□□□ 1.07
SHOX-204ENST00000554971 IPO8O15397 1037 aaKnown RBP21.74■■□□□ 1.07
SHOX-204ENST00000554971 TCIRG1Q13488 830 aa21.74■■□□□ 1.07
SHOX-204ENST00000554971 RTL5Q5HYW3 569 aaPredicted RBP21.74■■□□□ 1.07
SHOX-204ENST00000554971 RLBP1P12271 317 aa21.73■■□□□ 1.07
SHOX-204ENST00000554971 PTPRCP08575 1304 aa21.73■■□□□ 1.07
SHOX-204ENST00000554971 ATP5J2-PTCD1G3V325 749 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 FTSJ3Q8IY81 847 aaKnown RBP21.72■■□□□ 1.07
SHOX-204ENST00000554971 METTL22Q9BUU2 404 aaPredicted RBP21.72■■□□□ 1.07
SHOX-204ENST00000554971 N4BP2Q86UW6 1770 aaPredicted RBP21.72■■□□□ 1.07
SHOX-204ENST00000554971 CARMIL3Q8ND23 1372 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 IGKV5-2P06315 115 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 DNAAF4Q8WXU2 420 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 SETDB2Q96T68 719 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 ISCA1Q9BUE6 129 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 DDX19BQ9UMR2 479 aa21.72■■□□□ 1.07
SHOX-204ENST00000554971 KIF16BQ96L93 1317 aa21.71■■□□□ 1.07
SHOX-204ENST00000554971 MYD88Q99836 296 aa21.71■■□□□ 1.07
SHOX-204ENST00000554971 TNNQ9UQP3 1299 aa21.71■■□□□ 1.07
SHOX-204ENST00000554971 KIF13BQ9NQT8 1826 aa21.71■■□□□ 1.07
SHOX-204ENST00000554971 DAXXQ9UER7 740 aaPredicted RBP21.7■■□□□ 1.07
SHOX-204ENST00000554971 PCDHB15Q9Y5E8 787 aa21.7■■□□□ 1.07
SHOX-204ENST00000554971 ANKRD31Q8N7Z5 1873 aa21.7■■□□□ 1.07
SHOX-204ENST00000554971 HSP90AB3PQ58FF7 597 aa21.7■■□□□ 1.06
SHOX-204ENST00000554971 ATF7IPQ6VMQ6 1270 aa21.7■■□□□ 1.06
SHOX-204ENST00000554971 NLRP10Q86W26 655 aa21.7■■□□□ 1.06
SHOX-204ENST00000554971 SERPINB2P05120 415 aa21.69■■□□□ 1.06
SHOX-204ENST00000554971 POLD1P28340 1107 aa21.69■■□□□ 1.06
SHOX-204ENST00000554971 CWF19L2Q2TBE0 894 aaKnown RBP21.69■■□□□ 1.06
SHOX-204ENST00000554971 SUSD4Q5VX71 490 aa21.69■■□□□ 1.06
SHOX-204ENST00000554971 TRIM28Q13263 835 aaKnown RBP21.68■■□□□ 1.06
SHOX-204ENST00000554971 PARP3Q9Y6F1 533 aa21.68■■□□□ 1.06
SHOX-204ENST00000554971 FAM177BA6PVY3 158 aa21.68■■□□□ 1.06
SHOX-204ENST00000554971 TRIM27P14373 513 aa21.68■■□□□ 1.06
SHOX-204ENST00000554971 HDAC1Q13547 482 aaPredicted RBP21.68■■□□□ 1.06
SHOX-204ENST00000554971 BEND3Q5T5X7 828 aa21.68■■□□□ 1.06
SHOX-204ENST00000554971 NTSR2O95665 410 aa21.67■■□□□ 1.06
SHOX-204ENST00000554971 ARHGAP45Q92619 1136 aa21.67■■□□□ 1.06
SHOX-204ENST00000554971 CHMP4BQ9H444 224 aaKnown RBP21.67■■□□□ 1.06
SHOX-204ENST00000554971 NBR1Q14596 966 aa21.67■■□□□ 1.06
SHOX-204ENST00000554971 PRR5LQ6MZQ0 368 aa21.67■■□□□ 1.06
SHOX-204ENST00000554971 CCDC24Q8N4L8 307 aa21.67■■□□□ 1.06
SHOX-204ENST00000554971 PXDNLA1KZ92 1463 aa21.66■■□□□ 1.06
SHOX-204ENST00000554971 NEURL1BA8MQ27 555 aa21.66■■□□□ 1.06
SHOX-204ENST00000554971 SLC4A10Q6U841 1118 aa21.66■■□□□ 1.06
SHOX-204ENST00000554971 SYNE4Q8N205 404 aa21.66■■□□□ 1.06
SHOX-204ENST00000554971 KIAA1551Q9HCM1 1747 aa21.66■■□□□ 1.06
SHOX-204ENST00000554971 C10orf71Q711Q0 1435 aa21.65■■□□□ 1.06
SHOX-204ENST00000554971 TNRC6CQ9HCJ0 1690 aaKnown RBP21.65■■□□□ 1.06
SHOX-204ENST00000554971 DDX60Q8IY21 1712 aaKnown RBP21.65■■□□□ 1.06
SHOX-204ENST00000554971 PARP10Q53GL7 1025 aa21.65■■□□□ 1.06
SHOX-204ENST00000554971 NBPF5PQ86XG9 351 aaPredicted RBP21.65■■□□□ 1.06
SHOX-204ENST00000554971 NUTM1Q86Y26 1132 aa21.65■■□□□ 1.06
SHOX-204ENST00000554971 IBTKQ9P2D0 1353 aaPredicted RBP21.65■■□□□ 1.06
SHOX-204ENST00000554971 CCDC191Q8NCU4 936 aa21.65■■□□□ 1.06
SHOX-204ENST00000554971 LINS1Q8NG48 757 aa21.65■■□□□ 1.06
SHOX-204ENST00000554971 ABCC4O15439 1325 aa21.64■■□□□ 1.06
SHOX-204ENST00000554971 ABCC12Q96J65 1359 aa21.64■■□□□ 1.06
SHOX-204ENST00000554971 NEXNQ0ZGT2 675 aa21.64■■□□□ 1.05
SHOX-204ENST00000554971 CNBD1Q8NA66 436 aa21.63■■□□□ 1.05
SHOX-204ENST00000554971 LAMB2P55268 1798 aa21.63■■□□□ 1.05
SHOX-204ENST00000554971 API5Q9BZZ5 524 aaKnown RBP21.63■■□□□ 1.05
SHOX-204ENST00000554971 PDZRN3Q9UPQ7 1066 aa21.63■■□□□ 1.05
SHOX-204ENST00000554971 COL11A2P13942 1736 aaPredicted RBP21.62■■□□□ 1.05
SHOX-204ENST00000554971 GCKRQ14397 625 aa21.62■■□□□ 1.05
SHOX-204ENST00000554971 ERFEQ4G0M1 354 aa21.62■■□□□ 1.05
SHOX-204ENST00000554971 TPTE2Q6XPS3 522 aa21.62■■□□□ 1.05
SHOX-204ENST00000554971 FAM89AQ96GI7 184 aa21.62■■□□□ 1.05
SHOX-204ENST00000554971 CWC25Q9NXE8 425 aaPredicted RBP21.62■■□□□ 1.05
SHOX-204ENST00000554971 PPP1R42Q7Z4L9 355 aa21.61■■□□□ 1.05
SHOX-204ENST00000554971 JARID2Q92833 1246 aaPredicted RBP21.61■■□□□ 1.05
SHOX-204ENST00000554971 UTP14AQ9BVJ6 771 aaKnown RBP21.61■■□□□ 1.05
SHOX-204ENST00000554971 TRMT112Q9UI30 125 aaKnown RBP21.61■■□□□ 1.05
SHOX-204ENST00000554971 MYH3P11055 1940 aa21.6■■□□□ 1.05
SHOX-204ENST00000554971 DEKP35659 375 aaKnown RBP21.6■■□□□ 1.05
SHOX-204ENST00000554971 FHDC1Q9C0D6 1143 aaPredicted RBP21.6■■□□□ 1.05
SHOX-204ENST00000554971 SRCIN1Q9C0H9 1055 aa21.6■■□□□ 1.05
SHOX-204ENST00000554971 NYXQ9GZU5 481 aa21.6■■□□□ 1.05
SHOX-204ENST00000554971 BRCA1P38398 1863 aaKnown RBP21.59■■□□□ 1.05
SHOX-204ENST00000554971 ZBTB38Q8NAP3 1195 aaPredicted RBP21.59■■□□□ 1.05
SHOX-204ENST00000554971 UPF2Q9HAU5 1272 aaKnown RBP21.59■■□□□ 1.05
SHOX-204ENST00000554971 SH3TC1Q8TE82 1336 aa21.58■■□□□ 1.05
SHOX-204ENST00000554971 CASP7P55210 303 aa21.58■■□□□ 1.04
SHOX-204ENST00000554971 C3orf67Q6ZVT6 689 aa21.58■■□□□ 1.04
SHOX-204ENST00000554971 ZBTB40Q9NUA8 1239 aa21.58■■□□□ 1.04
SHOX-204ENST00000554971 PPP1R1BQ9UD71 204 aaPredicted RBP21.58■■□□□ 1.04
SHOX-204ENST00000554971 DLEC1Q9Y238 1755 aa21.58■■□□□ 1.04
SHOX-204ENST00000554971 ALDH1L1O75891 902 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 PCCAP05165 728 aaPredicted RBP21.57■■□□□ 1.04
SHOX-204ENST00000554971 INTS3Q68E01 1043 aaKnown RBP21.57■■□□□ 1.04
SHOX-204ENST00000554971 ITPRIPQ8IWB1 547 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 H7C1W4 665 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 HCLS1P14317 486 aaPredicted RBP21.57■■□□□ 1.04
SHOX-204ENST00000554971 SMC5Q8IY18 1101 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 KLHL34Q8N239 644 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms