RNA–Protein interactions for RNA: ENST00000550102.5

CHMP1A-208, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 5 BASIC

Gene CHMP1A, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-208ENST00000550102 GOLGA2Q08379 1002 aa22.22■■□□□ 1.15
CHMP1A-208ENST00000550102 TCIRG1Q13488 830 aa22.22■■□□□ 1.15
CHMP1A-208ENST00000550102 TWISTNBQ3B726 338 aaPredicted RBP22.22■■□□□ 1.15
CHMP1A-208ENST00000550102 ANKRD13DQ6ZTN6 518 aa22.22■■□□□ 1.15
CHMP1A-208ENST00000550102 UTP14AQ9BVJ6 771 aaKnown RBP22.22■■□□□ 1.15
CHMP1A-208ENST00000550102 CCER2I3L3R5 266 aa22.21■■□□□ 1.15
CHMP1A-208ENST00000550102 CRY2Q49AN0 593 aa22.21■■□□□ 1.15
CHMP1A-208ENST00000550102 NLRP10Q86W26 655 aa22.21■■□□□ 1.15
CHMP1A-208ENST00000550102 RASSF7Q02833 373 aa22.2■■□□□ 1.14
CHMP1A-208ENST00000550102 C9orf131Q5VYM1 1079 aa22.2■■□□□ 1.14
CHMP1A-208ENST00000550102 STK31Q9BXU1 1019 aa22.2■■□□□ 1.14
CHMP1A-208ENST00000550102 C21orf2O43822 256 aa22.19■■□□□ 1.14
CHMP1A-208ENST00000550102 SOGA3Q5TF21 947 aa22.19■■□□□ 1.14
CHMP1A-208ENST00000550102 MYH16Q9H6N6 1097 aa22.19■■□□□ 1.14
CHMP1A-208ENST00000550102 RNF181Q9P0P0 153 aa22.19■■□□□ 1.14
CHMP1A-208ENST00000550102 ZNF219Q9P2Y4 722 aaPredicted RBP22.19■■□□□ 1.14
CHMP1A-208ENST00000550102 NFKBIEO00221 500 aa22.18■■□□□ 1.14
CHMP1A-208ENST00000550102 RPGRQ92834 1020 aaKnown RBP22.18■■□□□ 1.14
CHMP1A-208ENST00000550102 PHAXQ9H814 394 aaKnown RBP22.18■■□□□ 1.14
CHMP1A-208ENST00000550102 SH3TC1Q8TE82 1336 aa22.17■■□□□ 1.14
CHMP1A-208ENST00000550102 DDX58O95786 925 aaKnown RBP22.17■■□□□ 1.14
CHMP1A-208ENST00000550102 RIC3Q7Z5B4 369 aa22.17■■□□□ 1.14
CHMP1A-208ENST00000550102 ZNF526Q8TF50 670 aaPredicted RBP22.17■■□□□ 1.14
CHMP1A-208ENST00000550102 GPBP1L1Q9HC44 474 aaPredicted RBP22.17■■□□□ 1.14
CHMP1A-208ENST00000550102 TRMT112Q9UI30 125 aaKnown RBP22.17■■□□□ 1.14
CHMP1A-208ENST00000550102 ZNF521Q96K83 1311 aa22.16■■□□□ 1.14
CHMP1A-208ENST00000550102 LMNB1P20700 586 aa22.16■■□□□ 1.14
CHMP1A-208ENST00000550102 ALDH1B1P30837 517 aa22.16■■□□□ 1.14
CHMP1A-208ENST00000550102 ISCA1Q9BUE6 129 aa22.16■■□□□ 1.14
CHMP1A-208ENST00000550102 LTBP3Q9NS15 1303 aa22.15■■□□□ 1.14
CHMP1A-208ENST00000550102 ZC3H4Q9UPT8 1303 aaKnown RBP22.15■■□□□ 1.14
CHMP1A-208ENST00000550102 ATP5J2-PTCD1G3V325 749 aa22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 HOXA10P31260 410 aaPredicted RBP22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 CCDC93Q567U6 631 aa22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 SLC10A5Q5PT55 438 aa22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 NLRP3Q96P20 1036 aa22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 TAOK3Q9H2K8 898 aa22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 SPINK5Q9NQ38 1064 aaPredicted RBP22.14■■□□□ 1.13
CHMP1A-208ENST00000550102 TCERG1O14776 1098 aaKnown RBP22.13■■□□□ 1.13
CHMP1A-208ENST00000550102 EXOSC9Q06265 439 aaKnown RBP22.13■■□□□ 1.13
CHMP1A-208ENST00000550102 C3orf67Q6ZVT6 689 aa22.13■■□□□ 1.13
CHMP1A-208ENST00000550102 C7orf43Q8WVR3 580 aa22.13■■□□□ 1.13
CHMP1A-208ENST00000550102 MYH3P11055 1940 aa22.13■■□□□ 1.13
CHMP1A-208ENST00000550102 TAF1P21675 1872 aa22.13■■□□□ 1.13
CHMP1A-208ENST00000550102 TRIM28Q13263 835 aaKnown RBP22.12■■□□□ 1.13
CHMP1A-208ENST00000550102 RBM17Q96I25 401 aaKnown RBP22.12■■□□□ 1.13
CHMP1A-208ENST00000550102 HCLS1P14317 486 aaPredicted RBP22.11■■□□□ 1.13
CHMP1A-208ENST00000550102 DIEXFQ68CQ4 756 aaKnown RBP22.11■■□□□ 1.13
CHMP1A-208ENST00000550102 CRAMP1Q96RY5 1269 aa22.11■■□□□ 1.13
CHMP1A-208ENST00000550102 MYD88Q99836 296 aa22.11■■□□□ 1.13
CHMP1A-208ENST00000550102 LRRC37AA6NMS7 1700 aa22.1■■□□□ 1.13
CHMP1A-208ENST00000550102 SLC4A2P04920 1241 aa22.1■■□□□ 1.13
CHMP1A-208ENST00000550102 PRELPP51888 382 aa22.1■■□□□ 1.13
CHMP1A-208ENST00000550102 SYNE4Q8N205 404 aa22.1■■□□□ 1.13
CHMP1A-208ENST00000550102 ZNF428Q96B54 188 aa22.1■■□□□ 1.13
CHMP1A-208ENST00000550102 SNED1Q8TER0 1413 aa22.09■■□□□ 1.13
CHMP1A-208ENST00000550102 VAMP4O75379 141 aa22.09■■□□□ 1.13
CHMP1A-208ENST00000550102 C1QTNF8P60827 252 aa22.09■■□□□ 1.13
CHMP1A-208ENST00000550102 KSR2Q6VAB6 950 aa22.09■■□□□ 1.13
CHMP1A-208ENST00000550102 METTL22Q9BUU2 404 aaPredicted RBP22.09■■□□□ 1.13
CHMP1A-208ENST00000550102 MAP3K2Q9Y2U5 619 aa22.09■■□□□ 1.13
CHMP1A-208ENST00000550102 KDM2BQ8NHM5 1336 aa22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 PI4KAP2A4QPH2 592 aa22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 PPEF1O14829 653 aaPredicted RBP22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 RTKN2Q8IZC4 609 aa22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 PI4KAP1Q8N8J0 262 aa22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 CCDC191Q8NCU4 936 aa22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 FAM89AQ96GI7 184 aa22.08■■□□□ 1.13
CHMP1A-208ENST00000550102 FKBP4Q02790 459 aaKnown RBP eCLIP22.07■■□□□ 1.12
CHMP1A-208ENST00000550102 FLIIQ13045 1269 aa22.07■■□□□ 1.12
CHMP1A-208ENST00000550102 CC2D2BQ6DHV5 1058 aa22.07■■□□□ 1.12
CHMP1A-208ENST00000550102 OLFM4Q6UX06 510 aa22.07■■□□□ 1.12
CHMP1A-208ENST00000550102 G2E3Q7L622 706 aa22.07■■□□□ 1.12
CHMP1A-208ENST00000550102 CWC25Q9NXE8 425 aaPredicted RBP22.07■■□□□ 1.12
CHMP1A-208ENST00000550102 ABCC4O15439 1325 aa22.06■■□□□ 1.12
CHMP1A-208ENST00000550102 NEXNQ0ZGT2 675 aa22.06■■□□□ 1.12
CHMP1A-208ENST00000550102 ZBTB38Q8NAP3 1195 aaPredicted RBP22.06■■□□□ 1.12
CHMP1A-208ENST00000550102 E9PSI1 815 aa22.05■■□□□ 1.12
CHMP1A-208ENST00000550102 HSP90B1P14625 803 aaKnown RBP22.05■■□□□ 1.12
CHMP1A-208ENST00000550102 FKBP5Q13451 457 aaPredicted RBP22.05■■□□□ 1.12
CHMP1A-208ENST00000550102 RTL5Q5HYW3 569 aaPredicted RBP22.05■■□□□ 1.12
CHMP1A-208ENST00000550102 IRS4O14654 1257 aaPredicted RBP22.04■■□□□ 1.12
CHMP1A-208ENST00000550102 GRIPAP1Q4V328 841 aa22.04■■□□□ 1.12
CHMP1A-208ENST00000550102 DDX46Q7L014 1031 aaKnown RBP22.04■■□□□ 1.12
CHMP1A-208ENST00000550102 WDR90Q96KV7 1748 aa22.03■■□□□ 1.12
CHMP1A-208ENST00000550102 PCCAP05165 728 aaPredicted RBP22.03■■□□□ 1.12
CHMP1A-208ENST00000550102 TMX4Q9H1E5 349 aaPredicted RBP22.03■■□□□ 1.12
CHMP1A-208ENST00000550102 NMRK2Q9NPI5 230 aa22.03■■□□□ 1.12
CHMP1A-208ENST00000550102 SPEF2Q9C093 1822 aa22.02■■□□□ 1.12
CHMP1A-208ENST00000550102 MIER1Q8N108 512 aa22.02■■□□□ 1.12
CHMP1A-208ENST00000550102 PSMD1Q99460 953 aa22.02■■□□□ 1.12
CHMP1A-208ENST00000550102 KIF3CO14782 793 aa22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 IGKV5-2P06315 115 aa22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 GRAPQ13588 217 aa22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 SF3B3Q15393 1217 aaKnown RBP22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 GRAPLQ8TC17 118 aaPredicted RBP22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 ZNF277Q9NRM2 450 aaPredicted RBP22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 ATP6V0A2Q9Y487 856 aa22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 COL4A1P02462 1669 aa22.01■■□□□ 1.11
CHMP1A-208ENST00000550102 GLTPD2A6NH11 291 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms