RNA–Protein interactions for RNA: ENST00000545668.5

DDX11-229, Transcript of DEAD/H-box helicase 11, human

TSL 1 (best) BASIC

Gene DDX11, Length 3,751 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-229	ENST00000545668	SOS2	Q07890	1332 aa	Predicted RBP	11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	ZNF830	Q96NB3	372 aa	Predicted RBP	11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	BICC1	Q9H694	974 aa	Known RBP	11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	IFIT2	P09913	472 aa	Known RBP	11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	ERC1	Q8IUD2	1116 aa		11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	CCDC9	Q9Y3X0	531 aa	Known RBP	11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	PCDH11X	Q9BZA7	1347 aa		11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	PCDH11Y	Q9BZA8	1340 aa		11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	IGKV5-2	P06315	115 aa		11.66	□□□□□ -0.54
DDX11-229	ENST00000545668	VPS37C	A5D8V6	355 aa	Predicted RBP	11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	CNTROB	Q8N137	903 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	GPATCH3	Q96I76	525 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	NEURL1B	A8MQ27	555 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	IL2RB	P14784	551 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	CERS3	Q8IU89	383 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	METTL22	Q9BUU2	404 aa	Predicted RBP	11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	SIL1	Q9H173	461 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	LMBRD1	Q9NUN5	540 aa		11.65	□□□□□ -0.54
DDX11-229	ENST00000545668	LMTK3	Q96Q04	1460 aa		11.65	□□□□□ -0.55
DDX11-229	ENST00000545668	PI4K2B	Q8TCG2	481 aa		11.65	□□□□□ -0.55
DDX11-229	ENST00000545668	COL18A1	P39060	1754 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	GOLGA6L4	A6NEF3	574 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	DDIT3	P35638	169 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	GCKR	Q14397	625 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	DRC7	Q8IY82	874 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	JARID2	Q92833	1246 aa	Predicted RBP	11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	PTCD1	O75127	700 aa	Known RBP	11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	AACS	Q86V21	672 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	GLRX3	O76003	335 aa	Known RBP	11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	CWC27	Q6UX04	472 aa	Known RBP	11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	TSPY26P	Q9H489	355 aa		11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.64	□□□□□ -0.55
DDX11-229	ENST00000545668	ATP5J2-PTCD1	G3V325	749 aa		11.63	□□□□□ -0.55
DDX11-229	ENST00000545668	TMEM63C	Q9P1W3	806 aa		11.63	□□□□□ -0.55
DDX11-229	ENST00000545668	KAZALD1	Q96I82	304 aa		11.63	□□□□□ -0.55
DDX11-229	ENST00000545668	ECHDC1	Q9NTX5	307 aa		11.63	□□□□□ -0.55
DDX11-229	ENST00000545668	TTC41P	Q6P2S7	1318 aa		11.63	□□□□□ -0.55
DDX11-229	ENST00000545668	CARD10	Q9BWT7	1032 aa		11.63	□□□□□ -0.55
DDX11-229	ENST00000545668	PLEKHG2	Q9H7P9	1386 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	UTY	O14607	1347 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	MBD3	O95983	291 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	GPT2	Q8TD30	523 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	USP25	Q9UHP3	1055 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	ABCC6	O95255	1503 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	ERVV-2	B6SEH9	535 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	ZBTB22	O15209	634 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	UBE3B	Q7Z3V4	1068 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	SPC24	Q8NBT2	197 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	KLHDC4	Q8TBB5	520 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	DIAPH3	Q9NSV4	1193 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	PALD1	Q9ULE6	856 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	SMC3	Q9UQE7	1217 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	SIPA1L3	O60292	1781 aa	Predicted RBP	11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	SCN11A	Q9UI33	1791 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668	ADAMTS7	Q9UKP4	1686 aa		11.62	□□□□□ -0.55
DDX11-229	ENST00000545668		A0A087WZG4	1122 aa		11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	ERICH4	A6NGS2	130 aa		11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	CCDC39	Q9UFE4	941 aa		11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	CPA1	P15085	419 aa		11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	COL5A2	P05997	1499 aa	Predicted RBP	11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	PHF14	O94880	888 aa		11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.61	□□□□□ -0.55
DDX11-229	ENST00000545668	FERMT3	Q86UX7	667 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	PLBD2	Q8NHP8	589 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	IL25	Q9H293	177 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	SASH1	O94885	1247 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	ANAPC15	P60006	121 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	EPHA10	Q5JZY3	1008 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	LRP10	Q7Z4F1	713 aa		11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	XIRP1	Q702N8	1843 aa	Known RBP	11.6	□□□□□ -0.55
DDX11-229	ENST00000545668	A1BG	P04217	495 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	FOSB	P53539	338 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	LRSAM1	Q6UWE0	723 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	EAF2	Q96CJ1	260 aa	Predicted RBP	11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	SGSM2	O43147	1006 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	GADD45B	O75293	160 aa	Predicted RBP	11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	RUFY2	Q8WXA3	655 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	BTG4	Q9NY30	223 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	TMOD3	Q9NYL9	352 aa		11.59	□□□□□ -0.55
DDX11-229	ENST00000545668	NBPF26	B4DH59	902 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	HCLS1	P14317	486 aa	Predicted RBP	11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	MCM2	P49736	904 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	NBPF14	Q5TI25	921 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	NBPF10	Q6P3W6	841 aa	Known RBP	11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	NBPF15	Q8N660	670 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	MAP7D2	Q96T17	732 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	MRC1	P22897	1456 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	STRC	Q7RTU9	1775 aa		11.58	□□□□□ -0.55
DDX11-229	ENST00000545668	USP42	Q9H9J4	1324 aa	Known RBP	11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	USP48	Q86UV5	1035 aa		11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	ZBTB3	Q9H5J0	574 aa		11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	TTC12	Q9H892	705 aa	Predicted RBP	11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	CRYBG1	Q9Y4K1	1723 aa		11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	OFD1	O75665	1012 aa		11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	TTLL7	Q6ZT98	887 aa		11.58	□□□□□ -0.56
DDX11-229	ENST00000545668	CCDC83	Q8IWF9	413 aa		11.58	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms