RNA–Protein interactions for RNA: ENST00000542777.1

DDX11-222, Transcript of DEAD/H-box helicase 11, human

TSL 2

Gene DDX11, Length 489 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-222	ENST00000542777	PPP1R42	Q7Z4L9	355 aa		21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	RBM17	Q96I25	401 aa	Known RBP	21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	PSMD1	Q99460	953 aa		21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	FZD9	O00144	591 aa		21.06	■□□□□ 0.96
DDX11-222	ENST00000542777	PARP10	Q53GL7	1025 aa		21.06	■□□□□ 0.96
DDX11-222	ENST00000542777	LDHD	Q86WU2	507 aa		21.06	■□□□□ 0.96
DDX11-222	ENST00000542777	ANXA1	P04083	346 aa		21.05	■□□□□ 0.96
DDX11-222	ENST00000542777	NEUROD2	Q15784	382 aa		21.05	■□□□□ 0.96
DDX11-222	ENST00000542777	PROSER3	Q2NL68	480 aa		21.05	■□□□□ 0.96
DDX11-222	ENST00000542777	CRAMP1	Q96RY5	1269 aa		21.05	■□□□□ 0.96
DDX11-222	ENST00000542777	CREBZF	Q9NS37	354 aa		21.05	■□□□□ 0.96
DDX11-222	ENST00000542777	HACL1	Q9UJ83	578 aa		21.05	■□□□□ 0.96
DDX11-222	ENST00000542777	MYBBP1A	Q9BQG0	1328 aa	Known RBP	21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	SNED1	Q8TER0	1413 aa		21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	EAPP	Q56P03	285 aa	Predicted RBP	21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	COL13A1	Q5TAT6	717 aa	Predicted RBP	21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	CCDC146	Q8IYE0	955 aa		21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	JDP2	Q8WYK2	163 aa		21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	NECTIN2	Q92692	538 aa		21.04	■□□□□ 0.96
DDX11-222	ENST00000542777	GRIPAP1	Q4V328	841 aa		21.03	■□□□□ 0.96
DDX11-222	ENST00000542777	C3orf67	Q6ZVT6	689 aa		21.03	■□□□□ 0.96
DDX11-222	ENST00000542777	NLRP3	Q96P20	1036 aa		21.03	■□□□□ 0.96
DDX11-222	ENST00000542777	UTP14A	Q9BVJ6	771 aa	Known RBP	21.03	■□□□□ 0.96
DDX11-222	ENST00000542777	TCERG1	O14776	1098 aa	Known RBP	21.02	■□□□□ 0.96
DDX11-222	ENST00000542777	PPEF1	O14829	653 aa	Predicted RBP	21.02	■□□□□ 0.96
DDX11-222	ENST00000542777	EPHX2	P34913	555 aa		21.02	■□□□□ 0.96
DDX11-222	ENST00000542777	CLEC11A	Q9Y240	323 aa		21.02	■□□□□ 0.96
DDX11-222	ENST00000542777	HSPA1A	P0DMV8	641 aa	Known RBP	21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	HSPA1B	P0DMV9	641 aa	Known RBP	21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	EIF6	P56537	245 aa	Known RBP	21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	AIMP1	Q12904	312 aa	Known RBP	21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	SLC10A5	Q5PT55	438 aa		21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	COPS6	Q7L5N1	327 aa		21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	GPC2	Q8N158	579 aa		21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	MKRN1	Q9UHC7	482 aa	Known RBP	21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	RNF123	Q5XPI4	1314 aa		21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	PASK	Q96RG2	1323 aa		21.01	■□□□□ 0.95
DDX11-222	ENST00000542777	CHL1	O00533	1208 aa		21	■□□□□ 0.95
DDX11-222	ENST00000542777	WDR43	Q15061	677 aa	Known RBP eCLIP	21	■□□□□ 0.95
DDX11-222	ENST00000542777	PNMA8A	Q86V59	439 aa	Predicted RBP	21	■□□□□ 0.95
DDX11-222	ENST00000542777	XAGE3	Q8WTP9	111 aa		21	■□□□□ 0.95
DDX11-222	ENST00000542777	RUNDC1	Q96C34	613 aa		21	■□□□□ 0.95
DDX11-222	ENST00000542777	LAS1L	Q9Y4W2	734 aa	Known RBP	21	■□□□□ 0.95
DDX11-222	ENST00000542777	ITGBL1	O95965	494 aa	Predicted RBP	20.99	■□□□□ 0.95
DDX11-222	ENST00000542777	HSP90AB3P	Q58FF7	597 aa		20.99	■□□□□ 0.95
DDX11-222	ENST00000542777	SLC51A	Q86UW1	340 aa		20.99	■□□□□ 0.95
DDX11-222	ENST00000542777	LARGE2	Q8N3Y3	721 aa		20.99	■□□□□ 0.95
DDX11-222	ENST00000542777	DDX21	Q9NR30	783 aa	Known RBP eCLIP	20.99	■□□□□ 0.95
DDX11-222	ENST00000542777	GJA3	Q9Y6H8	435 aa		20.99	■□□□□ 0.95
DDX11-222	ENST00000542777	KRT24	Q2M2I5	525 aa		20.98	■□□□□ 0.95
DDX11-222	ENST00000542777	TMX4	Q9H1E5	349 aa	Predicted RBP	20.98	■□□□□ 0.95
DDX11-222	ENST00000542777	TRIM35	Q9UPQ4	493 aa		20.98	■□□□□ 0.95
DDX11-222	ENST00000542777	COL4A5	P29400	1685 aa		20.98	■□□□□ 0.95
DDX11-222	ENST00000542777	ANKRD36C	Q5JPF3	1778 aa		20.97	■□□□□ 0.95
DDX11-222	ENST00000542777	NLRP10	Q86W26	655 aa		20.97	■□□□□ 0.95
DDX11-222	ENST00000542777	ADAMTSL1	Q8N6G6	1762 aa		20.96	■□□□□ 0.95
DDX11-222	ENST00000542777	TCIRG1	Q13488	830 aa		20.96	■□□□□ 0.95
DDX11-222	ENST00000542777	ADAMTS8	Q9UP79	889 aa		20.96	■□□□□ 0.95
DDX11-222	ENST00000542777	ATP6V0A2	Q9Y487	856 aa		20.96	■□□□□ 0.95
DDX11-222	ENST00000542777	TMEM88B	A6NKF7	163 aa		20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	HCLS1	P14317	486 aa	Predicted RBP	20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	LMOD1	P29536	600 aa	Predicted RBP	20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	MAP1S	Q66K74	1059 aa	Predicted RBP	20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	NIM1K	Q8IY84	436 aa		20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	CNTROB	Q8N137	903 aa		20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	TRMT112	Q9UI30	125 aa	Known RBP	20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	ABCC4	O15439	1325 aa		20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	CNTNAP1	P78357	1384 aa		20.95	■□□□□ 0.94
DDX11-222	ENST00000542777	PCNT	O95613	3336 aa		20.94	■□□□□ 0.94
DDX11-222	ENST00000542777	PPIP5K2	O43314	1243 aa		20.94	■□□□□ 0.94
DDX11-222	ENST00000542777	TNS4	Q8IZW8	715 aa		20.94	■□□□□ 0.94
DDX11-222	ENST00000542777	CHPF2	Q9P2E5	772 aa		20.94	■□□□□ 0.94
DDX11-222	ENST00000542777	LAMB2	P55268	1798 aa		20.94	■□□□□ 0.94
DDX11-222	ENST00000542777	BBOX1	O75936	387 aa		20.93	■□□□□ 0.94
DDX11-222	ENST00000542777	AOC3	Q16853	763 aa		20.93	■□□□□ 0.94
DDX11-222	ENST00000542777	HDGFL1	Q5TGJ6	251 aa		20.93	■□□□□ 0.94
DDX11-222	ENST00000542777	VPS33B	Q9H267	617 aa		20.93	■□□□□ 0.94
DDX11-222	ENST00000542777	EPS15	P42566	896 aa		20.92	■□□□□ 0.94
DDX11-222	ENST00000542777	SP8	Q8IXZ3	490 aa		20.92	■□□□□ 0.94
DDX11-222	ENST00000542777	SUPT20H	Q8NEM7	779 aa		20.92	■□□□□ 0.94
DDX11-222	ENST00000542777	SH3TC1	Q8TE82	1336 aa		20.92	■□□□□ 0.94
DDX11-222	ENST00000542777	LTBP1	Q14766	1721 aa		20.92	■□□□□ 0.94
DDX11-222	ENST00000542777	HOXB7	P09629	217 aa		20.91	■□□□□ 0.94
DDX11-222	ENST00000542777	SCNN1D	P51172	638 aa		20.91	■□□□□ 0.94
DDX11-222	ENST00000542777	DDX46	Q7L014	1031 aa	Known RBP	20.91	■□□□□ 0.94
DDX11-222	ENST00000542777	PLBD2	Q8NHP8	589 aa		20.91	■□□□□ 0.94
DDX11-222	ENST00000542777	RTFDC1	Q9BY42	306 aa	Predicted RBP	20.91	■□□□□ 0.94
DDX11-222	ENST00000542777	VEGFB	P49765	207 aa		20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	DPP8	Q6V1X1	898 aa	Predicted RBP	20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	ANKRD13D	Q6ZTN6	518 aa		20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	MPND	Q8N594	471 aa		20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	ZNF428	Q96B54	188 aa		20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	CFAP44	Q96MT7	982 aa		20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	DBF4	Q9UBU7	674 aa	Predicted RBP	20.9	■□□□□ 0.94
DDX11-222	ENST00000542777	GRAP	Q13588	217 aa		20.89	■□□□□ 0.93
DDX11-222	ENST00000542777	GRAPL	Q8TC17	118 aa	Predicted RBP	20.89	■□□□□ 0.93
DDX11-222	ENST00000542777	PRKRIP1	Q9H875	184 aa	Predicted RBP	20.89	■□□□□ 0.93
DDX11-222	ENST00000542777	DUSP27	Q5VZP5	1158 aa		20.88	■□□□□ 0.93
DDX11-222	ENST00000542777	USP50	Q70EL3	339 aa	Predicted RBP	20.88	■□□□□ 0.93
DDX11-222	ENST00000542777	ZNRF3	Q9ULT6	936 aa		20.88	■□□□□ 0.93

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms