RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CRY2Q49AN0 593 aa19.14■□□□□ 0.65
USP28-204ENST00000537642 ANKRD13DQ6ZTN6 518 aa19.14■□□□□ 0.65
USP28-204ENST00000537642 NLRP10Q86W26 655 aa19.14■□□□□ 0.65
USP28-204ENST00000537642 C7orf43Q8WVR3 580 aa19.14■□□□□ 0.65
USP28-204ENST00000537642 UTP14AQ9BVJ6 771 aaKnown RBP19.14■□□□□ 0.65
USP28-204ENST00000537642 LMNB1P20700 586 aa19.13■□□□□ 0.65
USP28-204ENST00000537642 C1QTNF8P60827 252 aa19.12■□□□□ 0.65
USP28-204ENST00000537642 C3orf67Q6ZVT6 689 aa19.12■□□□□ 0.65
USP28-204ENST00000537642 WDR63Q8IWG1 891 aa19.12■□□□□ 0.65
USP28-204ENST00000537642 PHAXQ9H814 394 aaKnown RBP19.12■□□□□ 0.65
USP28-204ENST00000537642 SLC10A5Q5PT55 438 aa19.11■□□□□ 0.65
USP28-204ENST00000537642 SOGA3Q5TF21 947 aa19.11■□□□□ 0.65
USP28-204ENST00000537642 CCDC30Q5VVM6 783 aa19.11■□□□□ 0.65
USP28-204ENST00000537642 DICER1Q9UPY3 1922 aaKnown RBP19.11■□□□□ 0.65
USP28-204ENST00000537642 RNF123Q5XPI4 1314 aa19.1■□□□□ 0.65
USP28-204ENST00000537642 LTBP3Q9NS15 1303 aa19.1■□□□□ 0.65
USP28-204ENST00000537642 ALDH1B1P30837 517 aa19.1■□□□□ 0.65
USP28-204ENST00000537642 SYNE4Q8N205 404 aa19.1■□□□□ 0.65
USP28-204ENST00000537642 ISCA1Q9BUE6 129 aa19.1■□□□□ 0.65
USP28-204ENST00000537642 TIAM2Q8IVF5 1701 aa19.1■□□□□ 0.65
USP28-204ENST00000537642 LAMB2P55268 1798 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 FANCIQ9NVI1 1328 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 KIF3CO14782 793 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 HOXA10P31260 410 aaPredicted RBP19.09■□□□□ 0.65
USP28-204ENST00000537642 TWISTNBQ3B726 338 aaPredicted RBP19.09■□□□□ 0.65
USP28-204ENST00000537642 OLFM4Q6UX06 510 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 RPGRQ92834 1020 aaKnown RBP19.09■□□□□ 0.65
USP28-204ENST00000537642 ZNF428Q96B54 188 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 CHMP4AQ9BY43 222 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 TAOK3Q9H2K8 898 aa19.09■□□□□ 0.65
USP28-204ENST00000537642 TRMT112Q9UI30 125 aaKnown RBP19.09■□□□□ 0.65
USP28-204ENST00000537642 ZC3H4Q9UPT8 1303 aaKnown RBP19.08■□□□□ 0.65
USP28-204ENST00000537642 ATP5J2-PTCD1G3V325 749 aa19.08■□□□□ 0.64
USP28-204ENST00000537642 GOLGA2Q08379 1002 aa19.08■□□□□ 0.64
USP28-204ENST00000537642 CCDC93Q567U6 631 aa19.08■□□□□ 0.64
USP28-204ENST00000537642 NLRP3Q96P20 1036 aa19.08■□□□□ 0.64
USP28-204ENST00000537642 SH3TC1Q8TE82 1336 aa19.07■□□□□ 0.64
USP28-204ENST00000537642 HCLS1P14317 486 aaPredicted RBP19.07■□□□□ 0.64
USP28-204ENST00000537642 RIC3Q7Z5B4 369 aa19.07■□□□□ 0.64
USP28-204ENST00000537642 RBM17Q96I25 401 aaKnown RBP19.07■□□□□ 0.64
USP28-204ENST00000537642 NMRK2Q9NPI5 230 aa19.07■□□□□ 0.64
USP28-204ENST00000537642 SPINK5Q9NQ38 1064 aaPredicted RBP19.07■□□□□ 0.64
USP28-204ENST00000537642 TCERG1O14776 1098 aaKnown RBP19.06■□□□□ 0.64
USP28-204ENST00000537642 TRIM28Q13263 835 aaKnown RBP19.06■□□□□ 0.64
USP28-204ENST00000537642 CRAMP1Q96RY5 1269 aa19.06■□□□□ 0.64
USP28-204ENST00000537642 DDX60Q8IY21 1712 aaKnown RBP19.05■□□□□ 0.64
USP28-204ENST00000537642 SNED1Q8TER0 1413 aa19.05■□□□□ 0.64
USP28-204ENST00000537642 KDM2BQ8NHM5 1336 aa19.04■□□□□ 0.64
USP28-204ENST00000537642 FKBP4Q02790 459 aaKnown RBP eCLIP19.04■□□□□ 0.64
USP28-204ENST00000537642 STK31Q9BXU1 1019 aa19.04■□□□□ 0.64
USP28-204ENST00000537642 CACNA1FO60840 1977 aa19.03■□□□□ 0.64
USP28-204ENST00000537642 DDX58O95786 925 aaKnown RBP19.03■□□□□ 0.64
USP28-204ENST00000537642 EXOSC9Q06265 439 aaKnown RBP19.03■□□□□ 0.64
USP28-204ENST00000537642 SLC51AQ86UW1 340 aa19.03■□□□□ 0.64
USP28-204ENST00000537642 RTKN2Q8IZC4 609 aa19.03■□□□□ 0.64
USP28-204ENST00000537642 FAM89AQ96GI7 184 aa19.03■□□□□ 0.64
USP28-204ENST00000537642 MYD88Q99836 296 aa19.03■□□□□ 0.64
USP28-204ENST00000537642 ZNF521Q96K83 1311 aa19.02■□□□□ 0.64
USP28-204ENST00000537642 GLTPD2A6NH11 291 aa19.02■□□□□ 0.64
USP28-204ENST00000537642 PPEF1O14829 653 aaPredicted RBP19.02■□□□□ 0.64
USP28-204ENST00000537642 VAMP4O75379 141 aa19.02■□□□□ 0.64
USP28-204ENST00000537642 G2E3Q7L622 706 aa19.02■□□□□ 0.64
USP28-204ENST00000537642 METTL22Q9BUU2 404 aaPredicted RBP19.02■□□□□ 0.64
USP28-204ENST00000537642 TAF1P21675 1872 aa19.02■□□□□ 0.64
USP28-204ENST00000537642 ABCC4O15439 1325 aa19.01■□□□□ 0.63
USP28-204ENST00000537642 SLC4A2P04920 1241 aa19.01■□□□□ 0.63
USP28-204ENST00000537642 RTL5Q5HYW3 569 aaPredicted RBP19.01■□□□□ 0.63
USP28-204ENST00000537642 CC2D2BQ6DHV5 1058 aa19.01■□□□□ 0.63
USP28-204ENST00000537642 RRAGCQ9HB90 399 aa19.01■□□□□ 0.63
USP28-204ENST00000537642 ZNF277Q9NRM2 450 aaPredicted RBP19.01■□□□□ 0.63
USP28-204ENST00000537642 MAP3K2Q9Y2U5 619 aa19.01■□□□□ 0.63
USP28-204ENST00000537642 PI4KAP2A4QPH2 592 aa19■□□□□ 0.63
USP28-204ENST00000537642 CCER2I3L3R5 266 aa19■□□□□ 0.63
USP28-204ENST00000537642 KSR2Q6VAB6 950 aa19■□□□□ 0.63
USP28-204ENST00000537642 PI4KAP1Q8N8J0 262 aa19■□□□□ 0.63
USP28-204ENST00000537642 CCDC191Q8NCU4 936 aa19■□□□□ 0.63
USP28-204ENST00000537642 MYH16Q9H6N6 1097 aa19■□□□□ 0.63
USP28-204ENST00000537642 ZBTB38Q8NAP3 1195 aaPredicted RBP18.99■□□□□ 0.63
USP28-204ENST00000537642 PSMD1Q99460 953 aa18.99■□□□□ 0.63
USP28-204ENST00000537642 IRS4O14654 1257 aaPredicted RBP18.98■□□□□ 0.63
USP28-204ENST00000537642 TOMM70O94826 608 aa18.98■□□□□ 0.63
USP28-204ENST00000537642 DDX46Q7L014 1031 aaKnown RBP18.98■□□□□ 0.63
USP28-204ENST00000537642 CWC25Q9NXE8 425 aaPredicted RBP18.98■□□□□ 0.63
USP28-204ENST00000537642 ATP6V0A2Q9Y487 856 aa18.98■□□□□ 0.63
USP28-204ENST00000537642 WDR90Q96KV7 1748 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 BBOX1O75936 387 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 IGKV5-2P06315 115 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 IARSP41252 1262 aaKnown RBP18.97■□□□□ 0.63
USP28-204ENST00000537642 FLIIQ13045 1269 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 GRAPQ13588 217 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 SF3B3Q15393 1217 aaKnown RBP18.97■□□□□ 0.63
USP28-204ENST00000537642 GRIPAP1Q4V328 841 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 DPY19L2Q6NUT2 758 aa18.97■□□□□ 0.63
USP28-204ENST00000537642 GRAPLQ8TC17 118 aaPredicted RBP18.97■□□□□ 0.63
USP28-204ENST00000537642 PCCAP05165 728 aaPredicted RBP18.96■□□□□ 0.63
USP28-204ENST00000537642 JARID2Q92833 1246 aaPredicted RBP18.96■□□□□ 0.63
USP28-204ENST00000537642 COL4A1P02462 1669 aa18.95■□□□□ 0.62
USP28-204ENST00000537642 POTECB2RU33 542 aa18.95■□□□□ 0.62
USP28-204ENST00000537642 SP8Q8IXZ3 490 aa18.95■□□□□ 0.62
USP28-204ENST00000537642 COL4A5P29400 1685 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms