RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SGIP1Q9BQI5 828 aa26.47■■□□□ 1.83
VPS28-212ENST00000530836 BCL2L12Q9HB09 334 aa26.47■■□□□ 1.83
VPS28-212ENST00000530836 SRCAPQ6ZRS2 3230 aa26.47■■□□□ 1.83
VPS28-212ENST00000530836 TTLL7Q6ZT98 887 aa26.47■■□□□ 1.83
VPS28-212ENST00000530836 SIRT2Q8IXJ6 389 aa26.47■■□□□ 1.83
VPS28-212ENST00000530836 ERVV-1B6SEH8 477 aa26.44■■□□□ 1.82
VPS28-212ENST00000530836 RGL2O15211 777 aa26.44■■□□□ 1.82
VPS28-212ENST00000530836 POLD1P28340 1107 aa26.44■■□□□ 1.82
VPS28-212ENST00000530836 KIF6Q6ZMV9 814 aa26.44■■□□□ 1.82
VPS28-212ENST00000530836 C4AP0C0L4 1744 aa26.44■■□□□ 1.82
VPS28-212ENST00000530836 CLEC4GQ6UXB4 293 aa26.43■■□□□ 1.82
VPS28-212ENST00000530836 PDZRN3Q9UPQ7 1066 aa26.43■■□□□ 1.82
VPS28-212ENST00000530836 MAP3K15Q6ZN16 1313 aa26.43■■□□□ 1.82
VPS28-212ENST00000530836 C9orf78Q9NZ63 289 aaPredicted RBP26.43■■□□□ 1.82
VPS28-212ENST00000530836 TM4SF1P30408 202 aa26.42■■□□□ 1.82
VPS28-212ENST00000530836 UTYO14607 1347 aa26.42■■□□□ 1.82
VPS28-212ENST00000530836 MMP10P09238 476 aa26.41■■□□□ 1.82
VPS28-212ENST00000530836 DCTPP1Q9H773 170 aa26.41■■□□□ 1.82
VPS28-212ENST00000530836 ZNF652Q9Y2D9 606 aa26.41■■□□□ 1.82
VPS28-212ENST00000530836 ATP8B2P98198 1209 aa26.4■■□□□ 1.82
VPS28-212ENST00000530836 NUCB1Q02818 461 aa26.4■■□□□ 1.82
VPS28-212ENST00000530836 HLFQ16534 295 aa26.4■■□□□ 1.82
VPS28-212ENST00000530836 ZBTB3Q9H5J0 574 aa26.4■■□□□ 1.82
VPS28-212ENST00000530836 NEURL1BA8MQ27 555 aa26.39■■□□□ 1.82
VPS28-212ENST00000530836 GRM8O00222 908 aa26.39■■□□□ 1.82
VPS28-212ENST00000530836 NFIXQ14938 502 aa26.39■■□□□ 1.82
VPS28-212ENST00000530836 MYD88Q99836 296 aa26.39■■□□□ 1.82
VPS28-212ENST00000530836 LRRFIP2Q9Y608 721 aaKnown RBP26.39■■□□□ 1.82
VPS28-212ENST00000530836 IGKV5-2P06315 115 aa26.39■■□□□ 1.81
VPS28-212ENST00000530836 CWF19L2Q2TBE0 894 aaKnown RBP26.39■■□□□ 1.81
VPS28-212ENST00000530836 TBC1D9BQ66K14 1250 aa26.39■■□□□ 1.81
VPS28-212ENST00000530836 NBPF7P0C2Y1 421 aaPredicted RBP26.38■■□□□ 1.81
VPS28-212ENST00000530836 ARFGEF2Q9Y6D5 1785 aa26.38■■□□□ 1.81
VPS28-212ENST00000530836 GCKRQ14397 625 aa26.37■■□□□ 1.81
VPS28-212ENST00000530836 GIGYF2Q6Y7W6 1299 aaKnown RBP26.37■■□□□ 1.81
VPS28-212ENST00000530836 COL24A1Q17RW2 1714 aa26.36■■□□□ 1.81
VPS28-212ENST00000530836 RGS3P49796 1198 aa26.36■■□□□ 1.81
VPS28-212ENST00000530836 DDR1Q08345 913 aa26.36■■□□□ 1.81
VPS28-212ENST00000530836 BICDL1Q6ZP65 573 aa26.36■■□□□ 1.81
VPS28-212ENST00000530836 CHD1LQ86WJ1 897 aa26.36■■□□□ 1.81
VPS28-212ENST00000530836 PARP3Q9Y6F1 533 aa26.36■■□□□ 1.81
VPS28-212ENST00000530836 POLRMTO00411 1230 aaKnown RBP26.35■■□□□ 1.81
VPS28-212ENST00000530836 SETDB2Q96T68 719 aa26.35■■□□□ 1.81
VPS28-212ENST00000530836 ZBTB47Q9UFB7 747 aaPredicted RBP26.34■■□□□ 1.81
VPS28-212ENST00000530836 SCN7AQ01118 1682 aa26.33■■□□□ 1.81
VPS28-212ENST00000530836 MTX1Q13505 466 aa26.33■■□□□ 1.81
VPS28-212ENST00000530836 TSHZ2Q9NRE2 1034 aa26.33■■□□□ 1.81
VPS28-212ENST00000530836 PPP1R1BQ9UD71 204 aaPredicted RBP26.33■■□□□ 1.81
VPS28-212ENST00000530836 ANKRD45Q5TZF3 282 aa26.32■■□□□ 1.8
VPS28-212ENST00000530836 CCDC191Q8NCU4 936 aa26.32■■□□□ 1.8
VPS28-212ENST00000530836 SSH3Q8TE77 659 aa26.32■■□□□ 1.8
VPS28-212ENST00000530836 NIP7Q9Y221 180 aaKnown RBP eCLIP26.32■■□□□ 1.8
VPS28-212ENST00000530836 LRP5O75197 1615 aa26.32■■□□□ 1.8
VPS28-212ENST00000530836 SKAP1Q86WV1 359 aa26.32■■□□□ 1.8
VPS28-212ENST00000530836 ZNF34Q8IZ26 560 aa26.32■■□□□ 1.8
VPS28-212ENST00000530836 TRIM28Q13263 835 aaKnown RBP26.31■■□□□ 1.8
VPS28-212ENST00000530836 TCIRG1Q13488 830 aa26.31■■□□□ 1.8
VPS28-212ENST00000530836 HSP90AB3PQ58FF7 597 aa26.31■■□□□ 1.8
VPS28-212ENST00000530836 BCORQ6W2J9 1755 aa26.3■■□□□ 1.8
VPS28-212ENST00000530836 SERPINB2P05120 415 aa26.3■■□□□ 1.8
VPS28-212ENST00000530836 CWC25Q9NXE8 425 aaPredicted RBP26.3■■□□□ 1.8
VPS28-212ENST00000530836 CARMIL3Q8ND23 1372 aa26.29■■□□□ 1.8
VPS28-212ENST00000530836 PNMA6EA0A0J9YXQ4 647 aa26.29■■□□□ 1.8
VPS28-212ENST00000530836 POLA2Q14181 598 aa26.29■■□□□ 1.8
VPS28-212ENST00000530836 PPP1R42Q7Z4L9 355 aa26.29■■□□□ 1.8
VPS28-212ENST00000530836 GPTP24298 496 aa26.28■■□□□ 1.8
VPS28-212ENST00000530836 ATP5J2-PTCD1G3V325 749 aa26.27■■□□□ 1.8
VPS28-212ENST00000530836 SRGAP3O43295 1099 aa26.27■■□□□ 1.8
VPS28-212ENST00000530836 ISCA1Q9BUE6 129 aa26.27■■□□□ 1.8
VPS28-212ENST00000530836 LNPKQ9C0E8 428 aa26.27■■□□□ 1.8
VPS28-212ENST00000530836 AFDNP55196 1824 aaKnown RBP26.27■■□□□ 1.8
VPS28-212ENST00000530836 HSP90AB4PQ58FF6 505 aa26.26■■□□□ 1.79
VPS28-212ENST00000530836 UBN2Q6ZU65 1347 aa26.26■■□□□ 1.79
VPS28-212ENST00000530836 PARP10Q53GL7 1025 aa26.25■■□□□ 1.79
VPS28-212ENST00000530836 SUCLG2Q96I99 432 aa26.25■■□□□ 1.79
VPS28-212ENST00000530836 FHDC1Q9C0D6 1143 aaPredicted RBP26.25■■□□□ 1.79
VPS28-212ENST00000530836 H7C1W4 665 aa26.25■■□□□ 1.79
VPS28-212ENST00000530836 RAB11FIP3O75154 756 aa26.25■■□□□ 1.79
VPS28-212ENST00000530836 PDE4AP27815 886 aa26.25■■□□□ 1.79
VPS28-212ENST00000530836 NBPF5PQ86XG9 351 aaPredicted RBP26.25■■□□□ 1.79
VPS28-212ENST00000530836 CD2APQ9Y5K6 639 aa26.25■■□□□ 1.79
VPS28-212ENST00000530836 TPTE2Q6XPS3 522 aa26.24■■□□□ 1.79
VPS28-212ENST00000530836 SUSD4Q5VX71 490 aa26.23■■□□□ 1.79
VPS28-212ENST00000530836 NLRP10Q86W26 655 aa26.23■■□□□ 1.79
VPS28-212ENST00000530836 NUP98P52948 1817 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 FAM177BA6PVY3 158 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 FAM161AQ3B820 660 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 PRR5LQ6MZQ0 368 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 UBE3BQ7Z3V4 1068 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 CNBD1Q8NA66 436 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 KAZALD1Q96I82 304 aa26.22■■□□□ 1.79
VPS28-212ENST00000530836 BICC1Q9H694 974 aaKnown RBP26.22■■□□□ 1.79
VPS28-212ENST00000530836 KLHL34Q8N239 644 aa26.21■■□□□ 1.79
VPS28-212ENST00000530836 SYT17Q9BSW7 474 aa26.21■■□□□ 1.79
VPS28-212ENST00000530836 LRRCC1Q9C099 1032 aa26.21■■□□□ 1.79
VPS28-212ENST00000530836 NYXQ9GZU5 481 aa26.21■■□□□ 1.79
VPS28-212ENST00000530836 CASP7P55210 303 aa26.21■■□□□ 1.79
VPS28-212ENST00000530836 NOP58Q9Y2X3 529 aaKnown RBP26.21■■□□□ 1.79
VPS28-212ENST00000530836 NPHP1O15259 732 aa26.2■■□□□ 1.78
VPS28-212ENST00000530836 RABL6Q3YEC7 729 aaPredicted RBP26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 155.5 ms