RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 BEGAINQ9BUH8 593 aa18.67■□□□□ 0.58
SPCS3-204ENST00000513139 KIF7Q2M1P5 1343 aa18.67■□□□□ 0.58
SPCS3-204ENST00000513139 NPC1L1Q9UHC9 1359 aa18.67■□□□□ 0.58
SPCS3-204ENST00000513139 LMOD1P29536 600 aaPredicted RBP18.66■□□□□ 0.58
SPCS3-204ENST00000513139 EIF6P56537 245 aaKnown RBP18.66■□□□□ 0.58
SPCS3-204ENST00000513139 CRY2Q49AN0 593 aa18.66■□□□□ 0.58
SPCS3-204ENST00000513139 LAMB4A4D0S4 1761 aa18.65■□□□□ 0.58
SPCS3-204ENST00000513139 MLLT1Q03111 559 aaPredicted RBP18.65■□□□□ 0.58
SPCS3-204ENST00000513139 CAPNS2Q96L46 248 aa18.65■□□□□ 0.58
SPCS3-204ENST00000513139 PRAMEF22A3QJZ6 481 aa18.64■□□□□ 0.57
SPCS3-204ENST00000513139 NBPF26B4DH59 902 aa18.64■□□□□ 0.57
SPCS3-204ENST00000513139 GTF2E1P29083 439 aaPredicted RBP18.64■□□□□ 0.57
SPCS3-204ENST00000513139 NBPF10Q6P3W6 841 aaKnown RBP18.64■□□□□ 0.57
SPCS3-204ENST00000513139 NBPF15Q8N660 670 aa18.64■□□□□ 0.57
SPCS3-204ENST00000513139 PHACTR3Q96KR7 559 aa18.64■□□□□ 0.57
SPCS3-204ENST00000513139 GPR101Q96P66 508 aaPredicted RBP18.64■□□□□ 0.57
SPCS3-204ENST00000513139 COL4A5P29400 1685 aa18.63■□□□□ 0.57
SPCS3-204ENST00000513139 USP50Q70EL3 339 aaPredicted RBP18.63■□□□□ 0.57
SPCS3-204ENST00000513139 NYXQ9GZU5 481 aa18.63■□□□□ 0.57
SPCS3-204ENST00000513139 CASP8AP2Q9UKL3 1982 aa18.62■□□□□ 0.57
SPCS3-204ENST00000513139 MAP2K2P36507 400 aa18.62■□□□□ 0.57
SPCS3-204ENST00000513139 SCNN1DP51172 638 aa18.62■□□□□ 0.57
SPCS3-204ENST00000513139 RSPH6AQ9H0K4 717 aa18.62■□□□□ 0.57
SPCS3-204ENST00000513139 GJA3Q9Y6H8 435 aa18.62■□□□□ 0.57
SPCS3-204ENST00000513139 RIC1Q4ADV7 1423 aa18.62■□□□□ 0.57
SPCS3-204ENST00000513139 TNRC18O15417 2968 aaPredicted RBP18.61■□□□□ 0.57
SPCS3-204ENST00000513139 CCDC85CA6NKD9 419 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 FAM177BA6PVY3 158 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 HOXA10P31260 410 aaPredicted RBP18.61■□□□□ 0.57
SPCS3-204ENST00000513139 PRKAR2BP31323 418 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 EPS15P42566 896 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 HLFQ16534 295 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 CST9Q5W186 159 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 RTF1Q92541 710 aaKnown RBP18.61■□□□□ 0.57
SPCS3-204ENST00000513139 PCDH10Q9P2E7 1040 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 TLL2Q9Y6L7 1015 aa18.61■□□□□ 0.57
SPCS3-204ENST00000513139 PDE4DIPQ5VU43 2346 aa18.6■□□□□ 0.57
SPCS3-204ENST00000513139 CA12O43570 354 aa18.6■□□□□ 0.57
SPCS3-204ENST00000513139 CYP4F22Q6NT55 531 aa18.6■□□□□ 0.57
SPCS3-204ENST00000513139 PAXIP1Q6ZW49 1069 aaPredicted RBP18.6■□□□□ 0.57
SPCS3-204ENST00000513139 IBTKQ9P2D0 1353 aaPredicted RBP18.59■□□□□ 0.57
SPCS3-204ENST00000513139 ERVV-1B6SEH8 477 aa18.59■□□□□ 0.57
SPCS3-204ENST00000513139 C1QBPQ07021 282 aaKnown RBP18.59■□□□□ 0.57
SPCS3-204ENST00000513139 LARGE2Q8N3Y3 721 aa18.59■□□□□ 0.57
SPCS3-204ENST00000513139 ABCC12Q96J65 1359 aa18.58■□□□□ 0.57
SPCS3-204ENST00000513139 HTATSF1O43719 755 aaKnown RBP18.58■□□□□ 0.56
SPCS3-204ENST00000513139 FMR1Q06787 632 aaKnown RBP eCLIP18.58■□□□□ 0.56
SPCS3-204ENST00000513139 RPGRQ92834 1020 aaKnown RBP18.58■□□□□ 0.56
SPCS3-204ENST00000513139 VPS33BQ9H267 617 aa18.58■□□□□ 0.56
SPCS3-204ENST00000513139 MCM10Q7L590 875 aa18.57■□□□□ 0.56
SPCS3-204ENST00000513139 HHIPL1Q96JK4 782 aa18.57■□□□□ 0.56
SPCS3-204ENST00000513139 CFAP53Q96M91 514 aa18.57■□□□□ 0.56
SPCS3-204ENST00000513139 CRAMP1Q96RY5 1269 aa18.57■□□□□ 0.56
SPCS3-204ENST00000513139 TRAF5O00463 557 aa18.56■□□□□ 0.56
SPCS3-204ENST00000513139 GRM1Q13255 1194 aa18.56■□□□□ 0.56
SPCS3-204ENST00000513139 SAPCD2Q86UD0 394 aa18.56■□□□□ 0.56
SPCS3-204ENST00000513139 NUTM1Q86Y26 1132 aa18.56■□□□□ 0.56
SPCS3-204ENST00000513139 ADARB2Q9NS39 739 aaKnown RBP18.56■□□□□ 0.56
SPCS3-204ENST00000513139 GPRC5DQ9NZD1 345 aa18.56■□□□□ 0.56
SPCS3-204ENST00000513139 NUDCQ9Y266 331 aa18.56■□□□□ 0.56
SPCS3-204ENST00000513139 KDM3BQ7LBC6 1761 aa18.55■□□□□ 0.56
SPCS3-204ENST00000513139 DLG5Q8TDM6 1919 aa18.55■□□□□ 0.56
SPCS3-204ENST00000513139 TAF7Q15545 349 aaPredicted RBP18.55■□□□□ 0.56
SPCS3-204ENST00000513139 NIM1KQ8IY84 436 aa18.55■□□□□ 0.56
SPCS3-204ENST00000513139 MAP3K15Q6ZN16 1313 aa18.54■□□□□ 0.56
SPCS3-204ENST00000513139 RBM17Q96I25 401 aaKnown RBP18.54■□□□□ 0.56
SPCS3-204ENST00000513139 PPEF1O14829 653 aaPredicted RBP18.53■□□□□ 0.56
SPCS3-204ENST00000513139 AOC2O75106 756 aa18.53■□□□□ 0.56
SPCS3-204ENST00000513139 BRPF1P55201 1214 aaPredicted RBP18.53■□□□□ 0.56
SPCS3-204ENST00000513139 PGAP2Q9UHJ9 254 aa18.53■□□□□ 0.56
SPCS3-204ENST00000513139 PPIP5K2O43314 1243 aa18.52■□□□□ 0.56
SPCS3-204ENST00000513139 KIF6Q6ZMV9 814 aa18.52■□□□□ 0.56
SPCS3-204ENST00000513139 TMX4Q9H1E5 349 aaPredicted RBP18.52■□□□□ 0.56
SPCS3-204ENST00000513139 TSKSQ9UJT2 592 aa18.52■□□□□ 0.56
SPCS3-204ENST00000513139 UBN2Q6ZU65 1347 aa18.51■□□□□ 0.55
SPCS3-204ENST00000513139 CDHR2Q9BYE9 1310 aa18.51■□□□□ 0.55
SPCS3-204ENST00000513139 CELF2O95319 508 aaKnown RBP18.51■□□□□ 0.55
SPCS3-204ENST00000513139 DCTN1Q14203 1278 aa18.51■□□□□ 0.55
SPCS3-204ENST00000513139 ZC3H15Q8WU90 426 aaKnown RBP18.51■□□□□ 0.55
SPCS3-204ENST00000513139 MCOLN1Q9GZU1 580 aa18.51■□□□□ 0.55
SPCS3-204ENST00000513139 ANKRD36CQ5JPF3 1778 aa18.5■□□□□ 0.55
SPCS3-204ENST00000513139 U2AF1L5P0DN76 240 aaPredicted RBP18.5■□□□□ 0.55
SPCS3-204ENST00000513139 U2AF1Q01081 240 aaKnown RBP eCLIP18.5■□□□□ 0.55
SPCS3-204ENST00000513139 ZNF34Q8IZ26 560 aa18.5■□□□□ 0.55
SPCS3-204ENST00000513139 SUPT20HQ8NEM7 779 aa18.5■□□□□ 0.55
SPCS3-204ENST00000513139 ZNRF3Q9ULT6 936 aa18.5■□□□□ 0.55
SPCS3-204ENST00000513139 ATP6V0A2Q9Y487 856 aa18.5■□□□□ 0.55
SPCS3-204ENST00000513139 POLR2AP24928 1970 aaKnown RBP18.5■□□□□ 0.55
SPCS3-204ENST00000513139 CXCL9Q07325 125 aa18.49■□□□□ 0.55
SPCS3-204ENST00000513139 AOC3Q16853 763 aa18.49■□□□□ 0.55
SPCS3-204ENST00000513139 SUSD4Q5VX71 490 aa18.49■□□□□ 0.55
SPCS3-204ENST00000513139 TTLL7Q6ZT98 887 aa18.49■□□□□ 0.55
SPCS3-204ENST00000513139 NGEFQ8N5V2 710 aa18.49■□□□□ 0.55
SPCS3-204ENST00000513139 PNISRQ8TF01 805 aaKnown RBP18.49■□□□□ 0.55
SPCS3-204ENST00000513139 RTFDC1Q9BY42 306 aaPredicted RBP18.49■□□□□ 0.55
SPCS3-204ENST00000513139 LAMB2P55268 1798 aa18.49■□□□□ 0.55
SPCS3-204ENST00000513139 NTSR2O95665 410 aa18.48■□□□□ 0.55
SPCS3-204ENST00000513139 GPTP24298 496 aa18.48■□□□□ 0.55
SPCS3-204ENST00000513139 CNGB1Q14028 1251 aaPredicted RBP18.48■□□□□ 0.55
SPCS3-204ENST00000513139 PPP1R42Q7Z4L9 355 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms