RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 TNRC6CQ9HCJ0 1690 aaKnown RBP15.01□□□□□ -0.01
SH3RF1-205ENST00000511421 C3orf67Q6ZVT6 689 aa15□□□□□ -0.01
SH3RF1-205ENST00000511421 ZNF526Q8TF50 670 aaPredicted RBP15□□□□□ -0.01
SH3RF1-205ENST00000511421 ISCA1Q9BUE6 129 aa15□□□□□ -0.01
SH3RF1-205ENST00000511421 GPBP1L1Q9HC44 474 aaPredicted RBP15□□□□□ -0.01
SH3RF1-205ENST00000511421 FANCIQ9NVI1 1328 aa15□□□□□ -0.01
SH3RF1-205ENST00000511421 LMNB1P20700 586 aa15□□□□□ -0.01
SH3RF1-205ENST00000511421 TWISTNBQ3B726 338 aaPredicted RBP15□□□□□ -0.01
SH3RF1-205ENST00000511421 CHMP4AQ9BY43 222 aa15□□□□□ -0.01
SH3RF1-205ENST00000511421 SPINK5Q9NQ38 1064 aaPredicted RBP15□□□□□ -0.01
SH3RF1-205ENST00000511421 RNF123Q5XPI4 1314 aa14.99□□□□□ -0.01
SH3RF1-205ENST00000511421 SBF1O95248 1867 aa14.99□□□□□ -0.01
SH3RF1-205ENST00000511421 ALDH1B1P30837 517 aa14.99□□□□□ -0.01
SH3RF1-205ENST00000511421 HOXA10P31260 410 aaPredicted RBP14.99□□□□□ -0.01
SH3RF1-205ENST00000511421 SYNE4Q8N205 404 aa14.99□□□□□ -0.01
SH3RF1-205ENST00000511421 SOGA3Q5TF21 947 aa14.98□□□□□ -0.01
SH3RF1-205ENST00000511421 LTBP3Q9NS15 1303 aa14.98□□□□□ -0.01
SH3RF1-205ENST00000511421 ANKRD36CQ5JPF3 1778 aa14.98□□□□□ -0.01
SH3RF1-205ENST00000511421 ARFGEF2Q9Y6D5 1785 aa14.98□□□□□ -0.01
SH3RF1-205ENST00000511421 ATP5J2-PTCD1G3V325 749 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 GOLGA2Q08379 1002 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 TRIM28Q13263 835 aaKnown RBP14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 RIC3Q7Z5B4 369 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 NLRP3Q96P20 1036 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 TRMT112Q9UI30 125 aaKnown RBP14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 CCER2I3L3R5 266 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 TCERG1O14776 1098 aaKnown RBP14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 OLFM4Q6UX06 510 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 RPGRQ92834 1020 aaKnown RBP14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 TAOK3Q9H2K8 898 aa14.97□□□□□ -0.01
SH3RF1-205ENST00000511421 SH3TC1Q8TE82 1336 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 ZNF521Q96K83 1311 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 FER1L6Q2WGJ9 1857 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 VAMP4O75379 141 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 HCLS1P14317 486 aaPredicted RBP14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 C1QTNF8P60827 252 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 CCDC93Q567U6 631 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 ZNF428Q96B54 188 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 CRAMP1Q96RY5 1269 aa14.96□□□□□ -0.01
SH3RF1-205ENST00000511421 KIF3CO14782 793 aa14.95□□□□□ -0.02
SH3RF1-205ENST00000511421 EXOSC9Q06265 439 aaKnown RBP14.95□□□□□ -0.02
SH3RF1-205ENST00000511421 RBM17Q96I25 401 aaKnown RBP14.95□□□□□ -0.02
SH3RF1-205ENST00000511421 STK31Q9BXU1 1019 aa14.95□□□□□ -0.02
SH3RF1-205ENST00000511421 ZC3H4Q9UPT8 1303 aaKnown RBP14.95□□□□□ -0.02
SH3RF1-205ENST00000511421 CACNA1SQ13698 1873 aa14.95□□□□□ -0.02
SH3RF1-205ENST00000511421 G2E3Q7L622 706 aa14.94□□□□□ -0.02
SH3RF1-205ENST00000511421 SNED1Q8TER0 1413 aa14.94□□□□□ -0.02
SH3RF1-205ENST00000511421 DDX58O95786 925 aaKnown RBP14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 SLC4A2P04920 1241 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 FAM89AQ96GI7 184 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 MYD88Q99836 296 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 METTL22Q9BUU2 404 aaPredicted RBP14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 MYH16Q9H6N6 1097 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 NMRK2Q9NPI5 230 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 FKBP4Q02790 459 aaKnown RBP eCLIP14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 KSR2Q6VAB6 950 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 SLC51AQ86UW1 340 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 RTKN2Q8IZC4 609 aa14.93□□□□□ -0.02
SH3RF1-205ENST00000511421 PI4KAP2A4QPH2 592 aa14.92□□□□□ -0.02
SH3RF1-205ENST00000511421 CC2D2BQ6DHV5 1058 aa14.92□□□□□ -0.02
SH3RF1-205ENST00000511421 PI4KAP1Q8N8J0 262 aa14.92□□□□□ -0.02
SH3RF1-205ENST00000511421 CCDC191Q8NCU4 936 aa14.92□□□□□ -0.02
SH3RF1-205ENST00000511421 MAP3K2Q9Y2U5 619 aa14.92□□□□□ -0.02
SH3RF1-205ENST00000511421 ABCC4O15439 1325 aa14.91□□□□□ -0.02
SH3RF1-205ENST00000511421 CCDC88AQ3V6T2 1871 aa14.91□□□□□ -0.02
SH3RF1-205ENST00000511421 KDM2BQ8NHM5 1336 aa14.91□□□□□ -0.02
SH3RF1-205ENST00000511421 GLTPD2A6NH11 291 aa14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 PPEF1O14829 653 aaPredicted RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 SF3B3Q15393 1217 aaKnown RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 RTL5Q5HYW3 569 aaPredicted RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 ZBTB38Q8NAP3 1195 aaPredicted RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 ZNF277Q9NRM2 450 aaPredicted RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 IRS4O14654 1257 aaPredicted RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 IGKV5-2P06315 115 aa14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 FLIIQ13045 1269 aa14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 PSMD1Q99460 953 aa14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 CWC25Q9NXE8 425 aaPredicted RBP14.9□□□□□ -0.02
SH3RF1-205ENST00000511421 BBOX1O75936 387 aa14.89□□□□□ -0.03
SH3RF1-205ENST00000511421 PCCAP05165 728 aaPredicted RBP14.89□□□□□ -0.03
SH3RF1-205ENST00000511421 DDX46Q7L014 1031 aaKnown RBP14.89□□□□□ -0.03
SH3RF1-205ENST00000511421 RRAGCQ9HB90 399 aa14.89□□□□□ -0.03
SH3RF1-205ENST00000511421 ATP6V0A2Q9Y487 856 aa14.89□□□□□ -0.03
SH3RF1-205ENST00000511421 LAMB2P55268 1798 aa14.89□□□□□ -0.03
SH3RF1-205ENST00000511421 DICER1Q9UPY3 1922 aaKnown RBP14.88□□□□□ -0.03
SH3RF1-205ENST00000511421 GRAPQ13588 217 aa14.88□□□□□ -0.03
SH3RF1-205ENST00000511421 GRIPAP1Q4V328 841 aa14.88□□□□□ -0.03
SH3RF1-205ENST00000511421 DDX60Q8IY21 1712 aaKnown RBP14.88□□□□□ -0.03
SH3RF1-205ENST00000511421 GRAPLQ8TC17 118 aaPredicted RBP14.88□□□□□ -0.03
SH3RF1-205ENST00000511421 TIAM2Q8IVF5 1701 aa14.88□□□□□ -0.03
SH3RF1-205ENST00000511421 IARSP41252 1262 aaKnown RBP14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 JARID2Q92833 1246 aaPredicted RBP14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 E9PSI1 815 aa14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 FKBP5Q13451 457 aaPredicted RBP14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 DIEXFQ68CQ4 756 aaKnown RBP14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 DPY19L2Q6NUT2 758 aa14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 SP8Q8IXZ3 490 aa14.87□□□□□ -0.03
SH3RF1-205ENST00000511421 NEURL1BA8MQ27 555 aa14.86□□□□□ -0.03
SH3RF1-205ENST00000511421 POTECB2RU33 542 aa14.86□□□□□ -0.03
SH3RF1-205ENST00000511421 TOMM70O94826 608 aa14.86□□□□□ -0.03
SH3RF1-205ENST00000511421 SLFN5Q08AF3 891 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms