RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 KIAA1211Q6ZU35 1233 aa19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 CLASRPQ8N2M8 674 aaKnown RBP19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 ECHDC1Q9NTX5 307 aa19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 C9orf78Q9NZ63 289 aaPredicted RBP19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 PTH1RQ03431 593 aa19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 LARP6Q9BRS8 491 aaKnown RBP19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 LIMCH1Q9UPQ0 1083 aa19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 MEGF6O75095 1541 aa19.36■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 TMEM87AQ8NBN3 555 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 KAZALD1Q96I82 304 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 NOL7Q9UMY1 257 aaKnown RBP19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 ADAMTS7Q9UKP4 1686 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 SLIT2O94813 1529 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 A0A0G2JS52 829 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 CPA1P15085 419 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 KCNB2Q92953 911 aa19.35■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 NRAPQ86VF7 1730 aa19.34■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 DIAPH3Q9NSV4 1193 aa19.34■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.34■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 LARGE1O95461 756 aa19.33■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 MSNP26038 577 aaKnown RBP19.33■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 FAM98CQ17RN3 349 aaKnown RBP19.33■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 SUCLG2Q96I99 432 aa19.33■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 HYPKQ9NX55 129 aa19.33■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 UTYO14607 1347 aa19.33■□□□□ 0.69
MSH5-SAPCD1-208ENST00000498473 ZSCAN22P10073 491 aaPredicted RBP19.33■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ERC1Q8IUD2 1116 aa19.33■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 TSPY26PQ9H489 355 aa19.33■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 OFD1O75665 1012 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 CASTP20810 708 aaKnown RBP19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 SYT1P21579 422 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 FGD1P98174 961 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 RBM10P98175 930 aaKnown RBP19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ADCK5Q3MIX3 580 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 FAM182BQ5T319 152 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 RNF214Q8ND24 703 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 RUFY2Q8WXA3 655 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 SYAP1Q96A49 352 aaPredicted RBP19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 SASH1O94885 1247 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 PDIA6Q15084 440 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 LINS1Q8NG48 757 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 CNPY2Q9Y2B0 182 aa19.32■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 GRM8O00222 908 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 STX6O43752 255 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 IFIT2P09913 472 aaKnown RBP19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 RAPGEF4Q8WZA2 1011 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 NECTIN1Q15223 517 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 PRPF40BQ6NWY9 871 aaKnown RBP19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 AACSQ86V21 672 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 FNBP4Q8N3X1 1017 aaPredicted RBP19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 EVI5LQ96CN4 794 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ZSWIM6Q9HCJ5 1215 aa19.31■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ZNF500O60304 480 aaPredicted RBP19.3■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 VPS53Q5VIR6 699 aa19.3■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 DDX54Q8TDD1 881 aaKnown RBP19.3■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 TM6SF1Q9BZW5 370 aa19.3■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 DDX21Q9NR30 783 aaKnown RBP eCLIP19.3■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 HDAC5Q9UQL6 1122 aa19.3■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 EAF2Q96CJ1 260 aaPredicted RBP19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 GPATCH3Q96I76 525 aa19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 JAKMIP1Q96N16 626 aaKnown RBP19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 BICC1Q9H694 974 aaKnown RBP19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 F13A1P00488 732 aa19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ST3GAL1Q11201 340 aa19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 CARD10Q9BWT7 1032 aa19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 PDRG1Q9NUG6 133 aa19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 SMC3Q9UQE7 1217 aa19.29■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 SPATA31A1Q5TZJ5 1347 aa19.28■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 CCDC171Q6TFL3 1326 aa19.28■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 ZKSCAN5Q9Y2L8 839 aa19.28■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 C5P01031 1676 aa19.28■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 IGKV5-2P06315 115 aa19.28■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 AIMP1Q12904 312 aaKnown RBP19.27■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 CCDC83Q8IWF9 413 aa19.27■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 FAM227BQ96M60 508 aa19.27■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 QTRT2Q9H974 415 aaKnown RBP19.27■□□□□ 0.68
MSH5-SAPCD1-208ENST00000498473 NWD2Q9ULI1 1742 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SPATA31A5Q5VU36 1347 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SPATA31A7Q8IWB4 1347 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 PHF14O94880 888 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 TPM2P07951 284 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 CCDC8Q9H0W5 538 aaPredicted RBP19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SNRKQ9NRH2 765 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 TLR7Q9NYK1 1049 aaKnown RBP19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 CYP46A1Q9Y6A2 500 aa19.27■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 DTNBO60941 627 aa19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 DDX58O95786 925 aaKnown RBP19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 IL2RBP14784 551 aa19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 TATP17735 454 aaPredicted RBP19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 GJB2P29033 226 aa19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 NMIQ13287 307 aaPredicted RBP19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 MAP4K1Q92918 833 aa19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 ZSCAN31Q96LW9 406 aaPredicted RBP19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 RGS17Q9UGC6 210 aaPredicted RBP19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 RBM8AQ9Y5S9 174 aaKnown RBP19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 SCN11AQ9UI33 1791 aa19.26■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 G3BP1Q13283 466 aaKnown RBP eCLIP19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 CCDC183Q5T5S1 534 aa19.25■□□□□ 0.67
MSH5-SAPCD1-208ENST00000498473 CREB3L3Q68CJ9 461 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms