RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 MS4A1P11836 297 aa18.43■□□□□ 0.54
BRCA1-223ENST00000494123 PTGER2P43116 358 aa18.43■□□□□ 0.54
BRCA1-223ENST00000494123 CNBD1Q8NA66 436 aa18.43■□□□□ 0.54
BRCA1-223ENST00000494123 SGIP1Q9BQI5 828 aa18.43■□□□□ 0.54
BRCA1-223ENST00000494123 UTP14AQ9BVJ6 771 aaKnown RBP18.43■□□□□ 0.54
BRCA1-223ENST00000494123 PLIN1O60240 522 aa18.42■□□□□ 0.54
BRCA1-223ENST00000494123 CCT4P50991 539 aaKnown RBP18.42■□□□□ 0.54
BRCA1-223ENST00000494123 DZIP1LQ8IYY4 767 aaKnown RBP18.42■□□□□ 0.54
BRCA1-223ENST00000494123 TRMT112Q9UI30 125 aaKnown RBP18.42■□□□□ 0.54
BRCA1-223ENST00000494123 TNNQ9UQP3 1299 aa18.42■□□□□ 0.54
BRCA1-223ENST00000494123 ABCC4O15439 1325 aa18.42■□□□□ 0.54
BRCA1-223ENST00000494123 IBTKQ9P2D0 1353 aaPredicted RBP18.42■□□□□ 0.54
BRCA1-223ENST00000494123 N4BP2Q86UW6 1770 aaPredicted RBP18.42■□□□□ 0.54
BRCA1-223ENST00000494123 ALDH1L1O75891 902 aa18.41■□□□□ 0.54
BRCA1-223ENST00000494123 ST5P78524 1137 aa18.41■□□□□ 0.54
BRCA1-223ENST00000494123 PPP1R1BQ9UD71 204 aaPredicted RBP18.41■□□□□ 0.54
BRCA1-223ENST00000494123 NRXN2Q9P2S2 1712 aa18.41■□□□□ 0.54
BRCA1-223ENST00000494123 NTSR2O95665 410 aa18.41■□□□□ 0.54
BRCA1-223ENST00000494123 RNF123Q5XPI4 1314 aa18.41■□□□□ 0.54
BRCA1-223ENST00000494123 PRR5LQ6MZQ0 368 aa18.41■□□□□ 0.54
BRCA1-223ENST00000494123 RRP1P56182 461 aaKnown RBP18.4■□□□□ 0.54
BRCA1-223ENST00000494123 GCKRQ14397 625 aa18.4■□□□□ 0.54
BRCA1-223ENST00000494123 NUTM1Q86Y26 1132 aa18.4■□□□□ 0.54
BRCA1-223ENST00000494123 KLHL34Q8N239 644 aa18.4■□□□□ 0.54
BRCA1-223ENST00000494123 SH3TC1Q8TE82 1336 aa18.39■□□□□ 0.53
BRCA1-223ENST00000494123 RTL5Q5HYW3 569 aaPredicted RBP18.39■□□□□ 0.53
BRCA1-223ENST00000494123 C9orf78Q9NZ63 289 aaPredicted RBP18.39■□□□□ 0.53
BRCA1-223ENST00000494123 ERFEQ4G0M1 354 aa18.38■□□□□ 0.53
BRCA1-223ENST00000494123 INTS3Q68E01 1043 aaKnown RBP18.38■□□□□ 0.53
BRCA1-223ENST00000494123 CCDC24Q8N4L8 307 aa18.38■□□□□ 0.53
BRCA1-223ENST00000494123 ZBTB38Q8NAP3 1195 aaPredicted RBP18.38■□□□□ 0.53
BRCA1-223ENST00000494123 FAM89AQ96GI7 184 aa18.38■□□□□ 0.53
BRCA1-223ENST00000494123 LRP5O75197 1615 aa18.38■□□□□ 0.53
BRCA1-223ENST00000494123 PCCAP05165 728 aaPredicted RBP18.38■□□□□ 0.53
BRCA1-223ENST00000494123 TMEM57Q8N5G2 664 aa18.38■□□□□ 0.53
BRCA1-223ENST00000494123 PANK1Q8TE04 598 aa18.38■□□□□ 0.53
BRCA1-223ENST00000494123 UBE3BQ7Z3V4 1068 aa18.37■□□□□ 0.53
BRCA1-223ENST00000494123 ITPRIPQ8IWB1 547 aa18.37■□□□□ 0.53
BRCA1-223ENST00000494123 SUPT16HQ9Y5B9 1047 aaKnown RBP18.37■□□□□ 0.53
BRCA1-223ENST00000494123 GRM8O00222 908 aa18.36■□□□□ 0.53
BRCA1-223ENST00000494123 RLBP1P12271 317 aa18.36■□□□□ 0.53
BRCA1-223ENST00000494123 HSP90B1P14625 803 aaKnown RBP18.36■□□□□ 0.53
BRCA1-223ENST00000494123 JARID2Q92833 1246 aaPredicted RBP18.36■□□□□ 0.53
BRCA1-223ENST00000494123 C10orf71Q711Q0 1435 aa18.36■□□□□ 0.53
BRCA1-223ENST00000494123 PDE3AQ14432 1141 aa18.35■□□□□ 0.53
BRCA1-223ENST00000494123 SYNE4Q8N205 404 aa18.35■□□□□ 0.53
BRCA1-223ENST00000494123 ABCC12Q96J65 1359 aa18.35■□□□□ 0.53
BRCA1-223ENST00000494123 H7C1W4 665 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 IRS4O14654 1257 aaPredicted RBP18.34■□□□□ 0.53
BRCA1-223ENST00000494123 BRIP1Q9BX63 1249 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 KIF13BQ9NQT8 1826 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 LAMB2P55268 1798 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 CDHR2Q9BYE9 1310 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 ANKRD31Q8N7Z5 1873 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 HCLS1P14317 486 aaPredicted RBP18.34■□□□□ 0.53
BRCA1-223ENST00000494123 PDE6BP35913 854 aa18.34■□□□□ 0.53
BRCA1-223ENST00000494123 DDX60Q8IY21 1712 aaKnown RBP18.33■□□□□ 0.53
BRCA1-223ENST00000494123 SLC10A5Q5PT55 438 aa18.33■□□□□ 0.52
BRCA1-223ENST00000494123 C20orf194Q5TEA3 1177 aa18.33■□□□□ 0.52
BRCA1-223ENST00000494123 NLRP3Q96P20 1036 aa18.33■□□□□ 0.52
BRCA1-223ENST00000494123 CD2APQ9Y5K6 639 aa18.33■□□□□ 0.52
BRCA1-223ENST00000494123 RIC1Q4ADV7 1423 aa18.32■□□□□ 0.52
BRCA1-223ENST00000494123 NBPF7P0C2Y1 421 aaPredicted RBP18.32■□□□□ 0.52
BRCA1-223ENST00000494123 USP44Q9H0E7 712 aa18.32■□□□□ 0.52
BRCA1-223ENST00000494123 COG6Q9Y2V7 657 aa18.32■□□□□ 0.52
BRCA1-223ENST00000494123 TNRC6CQ9HCJ0 1690 aaKnown RBP18.32■□□□□ 0.52
BRCA1-223ENST00000494123 UBTFL1P0CB47 393 aaPredicted RBP18.31■□□□□ 0.52
BRCA1-223ENST00000494123 MVPQ14764 893 aaKnown RBP18.31■□□□□ 0.52
BRCA1-223ENST00000494123 FHDC1Q9C0D6 1143 aaPredicted RBP18.31■□□□□ 0.52
BRCA1-223ENST00000494123 UTYO14607 1347 aa18.31■□□□□ 0.52
BRCA1-223ENST00000494123 PDE8AO60658 829 aa18.31■□□□□ 0.52
BRCA1-223ENST00000494123 GNAI3P08754 354 aa18.31■□□□□ 0.52
BRCA1-223ENST00000494123 CASP7P55210 303 aa18.31■□□□□ 0.52
BRCA1-223ENST00000494123 DDX19BQ9UMR2 479 aa18.31■□□□□ 0.52
BRCA1-223ENST00000494123 HDAC5Q9UQL6 1122 aa18.31■□□□□ 0.52
BRCA1-223ENST00000494123 MYH3P11055 1940 aa18.3■□□□□ 0.52
BRCA1-223ENST00000494123 C2CD5Q86YS7 1000 aa18.3■□□□□ 0.52
BRCA1-223ENST00000494123 MEIS3Q99687 375 aa18.3■□□□□ 0.52
BRCA1-223ENST00000494123 PDZRN3Q9UPQ7 1066 aa18.3■□□□□ 0.52
BRCA1-223ENST00000494123 H0YIN7 160 aa18.29■□□□□ 0.52
BRCA1-223ENST00000494123 TGFB2P61812 414 aa18.29■□□□□ 0.52
BRCA1-223ENST00000494123 CHMP4BQ9H444 224 aaKnown RBP18.29■□□□□ 0.52
BRCA1-223ENST00000494123 RPGRQ92834 1020 aaKnown RBP18.28■□□□□ 0.52
BRCA1-223ENST00000494123 PLA2G12BQ9BX93 195 aa18.28■□□□□ 0.52
BRCA1-223ENST00000494123 COL11A2P13942 1736 aaPredicted RBP18.28■□□□□ 0.52
BRCA1-223ENST00000494123 CHRNA5P30532 468 aa18.27■□□□□ 0.52
BRCA1-223ENST00000494123 CTSWP56202 376 aa18.27■□□□□ 0.52
BRCA1-223ENST00000494123 C3orf67Q6ZVT6 689 aa18.27■□□□□ 0.52
BRCA1-223ENST00000494123 SUCLG2Q96I99 432 aa18.27■□□□□ 0.52
BRCA1-223ENST00000494123 A0A0G2JLW4 131 aa18.27■□□□□ 0.51
BRCA1-223ENST00000494123 DPEP1P16444 411 aa18.27■□□□□ 0.51
BRCA1-223ENST00000494123 CCDC152Q4G0S7 254 aa18.27■□□□□ 0.51
BRCA1-223ENST00000494123 SYT17Q9BSW7 474 aa18.27■□□□□ 0.51
BRCA1-223ENST00000494123 DLEC1Q9Y238 1755 aa18.26■□□□□ 0.51
BRCA1-223ENST00000494123 KLRG2A4D1S0 409 aaPredicted RBP18.26■□□□□ 0.51
BRCA1-223ENST00000494123 ZBTB7BO15156 539 aaPredicted RBP18.26■□□□□ 0.51
BRCA1-223ENST00000494123 SRGNP10124 158 aa18.26■□□□□ 0.51
BRCA1-223ENST00000494123 CRY2Q49AN0 593 aa18.26■□□□□ 0.51
BRCA1-223ENST00000494123 NLGN2Q8NFZ4 835 aa18.26■□□□□ 0.51
BRCA1-223ENST00000494123 ZNF622Q969S3 477 aaKnown RBP eCLIP18.26■□□□□ 0.515e-8■■■□□ 17.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms