RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 MSL1Q68DK7 614 aa24.39■■□□□ 1.49
USP39-218ENST00000493829 CLEC4GQ6UXB4 293 aa24.39■■□□□ 1.49
USP39-218ENST00000493829 CCDC191Q8NCU4 936 aa24.39■■□□□ 1.49
USP39-218ENST00000493829 PDGFDQ9GZP0 370 aaPredicted RBP24.39■■□□□ 1.49
USP39-218ENST00000493829 GRM8O00222 908 aa24.38■■□□□ 1.49
USP39-218ENST00000493829 COL24A1Q17RW2 1714 aa24.38■■□□□ 1.49
USP39-218ENST00000493829 UBTFL1P0CB47 393 aaPredicted RBP24.37■■□□□ 1.49
USP39-218ENST00000493829 UBE3BQ7Z3V4 1068 aa24.37■■□□□ 1.49
USP39-218ENST00000493829 ZBTB40Q9NUA8 1239 aa24.37■■□□□ 1.49
USP39-218ENST00000493829 SUSD4Q5VX71 490 aa24.36■■□□□ 1.49
USP39-218ENST00000493829 GNAI3P08754 354 aa24.35■■□□□ 1.49
USP39-218ENST00000493829 TRIM28Q13263 835 aaKnown RBP24.35■■□□□ 1.49
USP39-218ENST00000493829 NFIXQ14938 502 aa24.35■■□□□ 1.49
USP39-218ENST00000493829 SETDB2Q96T68 719 aa24.35■■□□□ 1.49
USP39-218ENST00000493829 LRRFIP2Q9Y608 721 aaKnown RBP24.35■■□□□ 1.49
USP39-218ENST00000493829 R3HDM1Q15032 1099 aaKnown RBP24.34■■□□□ 1.49
USP39-218ENST00000493829 FAM89AQ96GI7 184 aa24.34■■□□□ 1.49
USP39-218ENST00000493829 TRMT112Q9UI30 125 aaKnown RBP24.34■■□□□ 1.49
USP39-218ENST00000493829 RGL2O15211 777 aa24.34■■□□□ 1.49
USP39-218ENST00000493829 PARP10Q53GL7 1025 aa24.34■■□□□ 1.49
USP39-218ENST00000493829 SYNE4Q8N205 404 aa24.34■■□□□ 1.49
USP39-218ENST00000493829 CHMP4BQ9H444 224 aaKnown RBP24.34■■□□□ 1.49
USP39-218ENST00000493829 CARMIL3Q8ND23 1372 aa24.32■■□□□ 1.48
USP39-218ENST00000493829 PSDA5PKW4 1024 aaPredicted RBP24.32■■□□□ 1.48
USP39-218ENST00000493829 NUTM1Q86Y26 1132 aa24.32■■□□□ 1.48
USP39-218ENST00000493829 SUCLG2Q96I99 432 aa24.32■■□□□ 1.48
USP39-218ENST00000493829 UTP14AQ9BVJ6 771 aaKnown RBP24.32■■□□□ 1.48
USP39-218ENST00000493829 NTSR2O95665 410 aa24.31■■□□□ 1.48
USP39-218ENST00000493829 GNAI2P04899 355 aa24.31■■□□□ 1.48
USP39-218ENST00000493829 UTYO14607 1347 aa24.31■■□□□ 1.48
USP39-218ENST00000493829 H7C1W4 665 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 PCCAP05165 728 aaPredicted RBP24.3■■□□□ 1.48
USP39-218ENST00000493829 PPP1R42Q7Z4L9 355 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 NBPF5PQ86XG9 351 aaPredicted RBP24.3■■□□□ 1.48
USP39-218ENST00000493829 ZBTB38Q8NAP3 1195 aaPredicted RBP24.3■■□□□ 1.48
USP39-218ENST00000493829 CASZ1Q86V15 1759 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 IBTKQ9P2D0 1353 aaPredicted RBP24.3■■□□□ 1.48
USP39-218ENST00000493829 NPHP1O15259 732 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 CASP7P55210 303 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 DDR1Q08345 913 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 CCDC24Q8N4L8 307 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 PCDHB15Q9Y5E8 787 aa24.3■■□□□ 1.48
USP39-218ENST00000493829 NLGN1Q8N2Q7 840 aa24.28■■□□□ 1.48
USP39-218ENST00000493829 SH3TC1Q8TE82 1336 aa24.28■■□□□ 1.48
USP39-218ENST00000493829 DDX60Q8IY21 1712 aaKnown RBP24.28■■□□□ 1.48
USP39-218ENST00000493829 LAMB2P55268 1798 aa24.28■■□□□ 1.48
USP39-218ENST00000493829 GTF2E1P29083 439 aaPredicted RBP24.27■■□□□ 1.48
USP39-218ENST00000493829 ERFEQ4G0M1 354 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 BICC1Q9H694 974 aaKnown RBP24.27■■□□□ 1.48
USP39-218ENST00000493829 ABCC12Q96J65 1359 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 MMP10P09238 476 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 TM4SF1P30408 202 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 EPHA10Q5JZY3 1008 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 ERICH6BQ5W0A0 696 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 KAZALD1Q96I82 304 aa24.27■■□□□ 1.48
USP39-218ENST00000493829 IRS4O14654 1257 aaPredicted RBP24.26■■□□□ 1.47
USP39-218ENST00000493829 HCLS1P14317 486 aaPredicted RBP24.26■■□□□ 1.47
USP39-218ENST00000493829 POLRMTO00411 1230 aaKnown RBP24.25■■□□□ 1.47
USP39-218ENST00000493829 ZBTB7AO95365 584 aa24.25■■□□□ 1.47
USP39-218ENST00000493829 AAMPQ13685 434 aa24.25■■□□□ 1.47
USP39-218ENST00000493829 B4GALNT3Q6L9W6 998 aa24.25■■□□□ 1.47
USP39-218ENST00000493829 CEP85Q6P2H3 762 aa24.25■■□□□ 1.47
USP39-218ENST00000493829 CNBD1Q8NA66 436 aa24.25■■□□□ 1.47
USP39-218ENST00000493829 NYXQ9GZU5 481 aa24.25■■□□□ 1.47
USP39-218ENST00000493829 CDHR2Q9BYE9 1310 aa24.24■■□□□ 1.47
USP39-218ENST00000493829 SERPINB2P05120 415 aa24.24■■□□□ 1.47
USP39-218ENST00000493829 PPP4R2Q9NY27 417 aa24.24■■□□□ 1.47
USP39-218ENST00000493829 TNRC6CQ9HCJ0 1690 aaKnown RBP24.24■■□□□ 1.47
USP39-218ENST00000493829 CCDC136Q96JN2 1154 aa24.24■■□□□ 1.47
USP39-218ENST00000493829 CCDC85AQ96PX6 553 aaPredicted RBP24.24■■□□□ 1.47
USP39-218ENST00000493829 TPTE2Q6XPS3 522 aa24.23■■□□□ 1.47
USP39-218ENST00000493829 ANKRD44Q8N8A2 993 aa24.23■■□□□ 1.47
USP39-218ENST00000493829 CHMP3Q9Y3E7 222 aa24.23■■□□□ 1.47
USP39-218ENST00000493829 HDAC5Q9UQL6 1122 aa24.22■■□□□ 1.47
USP39-218ENST00000493829 PARP3Q9Y6F1 533 aa24.22■■□□□ 1.47
USP39-218ENST00000493829 MYH3P11055 1940 aa24.22■■□□□ 1.47
USP39-218ENST00000493829 FOXO4P98177 505 aa24.21■■□□□ 1.47
USP39-218ENST00000493829 PRR5LQ6MZQ0 368 aa24.21■■□□□ 1.47
USP39-218ENST00000493829 SIRT2Q8IXJ6 389 aa24.21■■□□□ 1.47
USP39-218ENST00000493829 PNMA6EA0A0J9YXQ4 647 aa24.21■■□□□ 1.47
USP39-218ENST00000493829 LMBR1LQ6UX01 489 aa24.21■■□□□ 1.47
USP39-218ENST00000493829 NRXN2Q9P2S2 1712 aa24.2■■□□□ 1.47
USP39-218ENST00000493829 ATF5Q9Y2D1 282 aaPredicted RBP24.2■■□□□ 1.46
USP39-218ENST00000493829 SRGAP3O43295 1099 aa24.19■■□□□ 1.46
USP39-218ENST00000493829 CTSWP56202 376 aa24.19■■□□□ 1.46
USP39-218ENST00000493829 C3orf67Q6ZVT6 689 aa24.19■■□□□ 1.46
USP39-218ENST00000493829 SLC16A10Q8TF71 515 aa24.19■■□□□ 1.46
USP39-218ENST00000493829 PDE8AO60658 829 aa24.18■■□□□ 1.46
USP39-218ENST00000493829 ST5P78524 1137 aa24.18■■□□□ 1.46
USP39-218ENST00000493829 IGHDP01880 384 aa24.18■■□□□ 1.46
USP39-218ENST00000493829 RPAP2Q8IXW5 612 aaPredicted RBP24.18■■□□□ 1.46
USP39-218ENST00000493829 PLA2G12BQ9BX93 195 aa24.18■■□□□ 1.46
USP39-218ENST00000493829 ATP8B2P98198 1209 aa24.17■■□□□ 1.46
USP39-218ENST00000493829 FAM161AQ3B820 660 aa24.17■■□□□ 1.46
USP39-218ENST00000493829 RABL6Q3YEC7 729 aaPredicted RBP24.17■■□□□ 1.46
USP39-218ENST00000493829 MTFR1LQ9H019 292 aa24.16■■□□□ 1.46
USP39-218ENST00000493829 ANKRD31Q8N7Z5 1873 aa24.15■■□□□ 1.46
USP39-218ENST00000493829 HMMRO75330 724 aa24.15■■□□□ 1.46
USP39-218ENST00000493829 MTX1Q13505 466 aa24.15■■□□□ 1.46
USP39-218ENST00000493829 RWDD1Q9H446 243 aaPredicted RBP24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms