RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 TTLL12Q14166 644 aaPredicted RBP8.96□□□□□ -0.98
VPS52-219ENST00000493379 MTHFSDQ2M296 383 aaKnown RBP8.96□□□□□ -0.98
VPS52-219ENST00000493379 SLAIN1Q8ND83 568 aa8.96□□□□□ -0.98
VPS52-219ENST00000493379 SLC17A8Q8NDX2 589 aa8.96□□□□□ -0.98
VPS52-219ENST00000493379 PHACTR3Q96KR7 559 aa8.96□□□□□ -0.98
VPS52-219ENST00000493379 LY75O60449 1722 aa8.96□□□□□ -0.98
VPS52-219ENST00000493379 ANP32CO43423 234 aa8.95□□□□□ -0.98
VPS52-219ENST00000493379 HTATSF1O43719 755 aaKnown RBP8.95□□□□□ -0.98
VPS52-219ENST00000493379 POTEJP0CG39 1038 aa8.95□□□□□ -0.98
VPS52-219ENST00000493379 U2AF1L5P0DN76 240 aaPredicted RBP8.95□□□□□ -0.98
VPS52-219ENST00000493379 VEGFAP15692 232 aaPredicted RBP8.95□□□□□ -0.98
VPS52-219ENST00000493379 U2AF1Q01081 240 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS52-219ENST00000493379 CNGB1Q14028 1251 aaPredicted RBP8.95□□□□□ -0.98
VPS52-219ENST00000493379 PNNQ9H307 717 aaKnown RBP8.95□□□□□ -0.98
VPS52-219ENST00000493379 BRCA1P38398 1863 aaKnown RBP8.95□□□□□ -0.98
VPS52-219ENST00000493379 POTECB2RU33 542 aa8.94□□□□□ -0.98
VPS52-219ENST00000493379 U2SURPO15042 1029 aaKnown RBP8.94□□□□□ -0.98
VPS52-219ENST00000493379 PRKAR2BP31323 418 aa8.94□□□□□ -0.98
VPS52-219ENST00000493379 DGKZQ13574 1117 aa8.94□□□□□ -0.98
VPS52-219ENST00000493379 TSR1Q2NL82 804 aaKnown RBP8.94□□□□□ -0.98
VPS52-219ENST00000493379 TYW1BQ6NUM6 668 aa8.94□□□□□ -0.98
VPS52-219ENST00000493379 ZNF530Q6P9A1 599 aaPredicted RBP8.94□□□□□ -0.98
VPS52-219ENST00000493379 AMIGO3Q86WK7 504 aa8.94□□□□□ -0.98
VPS52-219ENST00000493379 GAS2L2Q8NHY3 880 aa8.94□□□□□ -0.98
VPS52-219ENST00000493379 SP7Q8TDD2 431 aaPredicted RBP8.94□□□□□ -0.98
VPS52-219ENST00000493379 PNISRQ8TF01 805 aaKnown RBP8.94□□□□□ -0.98
VPS52-219ENST00000493379 RNMTO43148 476 aaKnown RBP8.93□□□□□ -0.98
VPS52-219ENST00000493379 HMGB2P26583 209 aaKnown RBP8.93□□□□□ -0.98
VPS52-219ENST00000493379 PIGBQ92521 554 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 FBXW7Q969H0 707 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 GCC1Q96CN9 775 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 ADAMTS8Q9UP79 889 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 CEMIPQ8WUJ3 1361 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 KIF13BQ9NQT8 1826 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 ARFGEF1Q9Y6D6 1849 aa8.93□□□□□ -0.98
VPS52-219ENST00000493379 KDM6AO15550 1401 aaPredicted RBP8.92□□□□□ -0.98
VPS52-219ENST00000493379 CCDC184Q52MB2 194 aa8.92□□□□□ -0.98
VPS52-219ENST00000493379 C1orf141Q5JVX7 400 aa8.92□□□□□ -0.98
VPS52-219ENST00000493379 GIGYF2Q6Y7W6 1299 aaKnown RBP8.92□□□□□ -0.98
VPS52-219ENST00000493379 IL17REQ8NFR9 667 aa8.92□□□□□ -0.98
VPS52-219ENST00000493379 REPIN1Q9BWE0 567 aaKnown RBP8.92□□□□□ -0.98
VPS52-219ENST00000493379 LGR6Q9HBX8 967 aa8.92□□□□□ -0.98
VPS52-219ENST00000493379 CCNL1Q9UK58 526 aaPredicted RBP8.92□□□□□ -0.98
VPS52-219ENST00000493379 LTBP1Q14766 1721 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 ADAMTS7Q9UKP4 1686 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 GNAT3A8MTJ3 354 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 MS4A1P11836 297 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 DPEP1P16444 411 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 MAP2K1Q02750 393 aaPredicted RBP8.91□□□□□ -0.98
VPS52-219ENST00000493379 SMARCC1Q92922 1105 aaPredicted RBP8.91□□□□□ -0.98
VPS52-219ENST00000493379 SLC52A2Q9HAB3 445 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 TOGARAM1Q9Y4F4 1720 aa8.91□□□□□ -0.98
VPS52-219ENST00000493379 WDR33Q9C0J8 1336 aaKnown RBP8.9□□□□□ -0.98
VPS52-219ENST00000493379 FOSBP53539 338 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 RASSF7Q02833 373 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 MPRIPQ6WCQ1 1025 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 NFATC2IPQ8NCF5 419 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 RUNDC1Q96C34 613 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 TMUB1Q9BVT8 246 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 ATG3Q9NT62 314 aa8.9□□□□□ -0.98
VPS52-219ENST00000493379 COL6A3P12111 3177 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 MRC1P22897 1456 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 PASKQ96RG2 1323 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 C5P01031 1676 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 GLTPD2A6NH11 291 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 CCER2I3L3R5 266 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 NFE2L2Q16236 605 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 SYTL4Q96C24 671 aaPredicted RBP8.89□□□□□ -0.99
VPS52-219ENST00000493379 PHOX2BQ99453 314 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 GOPCQ9HD26 462 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 TMOD3Q9NYL9 352 aa8.89□□□□□ -0.99
VPS52-219ENST00000493379 CCDC88AQ3V6T2 1871 aa8.88□□□□□ -0.99
VPS52-219ENST00000493379 CLCN1P35523 988 aa8.88□□□□□ -0.99
VPS52-219ENST00000493379 TMPOP42166 694 aaKnown RBP8.88□□□□□ -0.99
VPS52-219ENST00000493379 CABP4P57796 275 aa8.88□□□□□ -0.99
VPS52-219ENST00000493379 BABAM1Q9NWV8 329 aa8.88□□□□□ -0.99
VPS52-219ENST00000493379 ASAP1Q9ULH1 1129 aa8.88□□□□□ -0.99
VPS52-219ENST00000493379 TIAM2Q8IVF5 1701 aa8.88□□□□□ -0.99
VPS52-219ENST00000493379 TMEM88BA6NKF7 163 aa8.87□□□□□ -0.99
VPS52-219ENST00000493379 WDR43Q15061 677 aaKnown RBP eCLIP8.87□□□□□ -0.99
VPS52-219ENST00000493379 DEFB115Q30KQ5 88 aa8.87□□□□□ -0.99
VPS52-219ENST00000493379 C6orf132Q5T0Z8 1188 aa8.87□□□□□ -0.99
VPS52-219ENST00000493379 SLC4A9Q96Q91 983 aa8.87□□□□□ -0.99
VPS52-219ENST00000493379 DOT1LQ8TEK3 1739 aa8.87□□□□□ -0.99
VPS52-219ENST00000493379 TAF1LQ8IZX4 1826 aa8.87□□□□□ -0.99
VPS52-219ENST00000493379 PALLDQ8WX93 1383 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 LOC102724428A0A0B4J2F2 783 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 NEFMP07197 916 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 KCNA3P22001 575 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 SIK1P57059 783 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 MDM2Q00987 491 aaPredicted RBP8.86□□□□□ -0.99
VPS52-219ENST00000493379 GRM1Q13255 1194 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 CCDC27Q2M243 656 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 RC3H1Q5TC82 1133 aaKnown RBP8.86□□□□□ -0.99
VPS52-219ENST00000493379 NGEFQ8N5V2 710 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 ZDHHC16Q969W1 377 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 MRS2Q9HD23 443 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 GPCPD1Q9NPB8 672 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 THSD7BQ9C0I4 1608 aa8.86□□□□□ -0.99
VPS52-219ENST00000493379 TRIOBPQ9H2D6 2365 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms