RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 LAMB2P55268 1798 aa17.51■□□□□ 0.39
C9orf3-221ENST00000489562 GPTP24298 496 aa17.5■□□□□ 0.39
C9orf3-221ENST00000489562 R3HDM1Q15032 1099 aaKnown RBP17.5■□□□□ 0.39
C9orf3-221ENST00000489562 TBC1D9BQ66K14 1250 aa17.5■□□□□ 0.39
C9orf3-221ENST00000489562 UBN2Q6ZU65 1347 aa17.49■□□□□ 0.39
C9orf3-221ENST00000489562 GNAI3P08754 354 aa17.49■□□□□ 0.39
C9orf3-221ENST00000489562 AAMPQ13685 434 aa17.49■□□□□ 0.39
C9orf3-221ENST00000489562 NFIXQ14938 502 aa17.49■□□□□ 0.39
C9orf3-221ENST00000489562 NYXQ9GZU5 481 aa17.49■□□□□ 0.39
C9orf3-221ENST00000489562 C9orf78Q9NZ63 289 aaPredicted RBP17.49■□□□□ 0.39
C9orf3-221ENST00000489562 NRXN2Q9P2S2 1712 aa17.49■□□□□ 0.39
C9orf3-221ENST00000489562 UTYO14607 1347 aa17.48■□□□□ 0.39
C9orf3-221ENST00000489562 GRM8O00222 908 aa17.48■□□□□ 0.39
C9orf3-221ENST00000489562 PCCAP05165 728 aaPredicted RBP17.48■□□□□ 0.39
C9orf3-221ENST00000489562 TM4SF1P30408 202 aa17.48■□□□□ 0.39
C9orf3-221ENST00000489562 CRBNQ96SW2 442 aa17.48■□□□□ 0.39
C9orf3-221ENST00000489562 HSP90B1P14625 803 aaKnown RBP17.47■□□□□ 0.39
C9orf3-221ENST00000489562 BICDL1Q6ZP65 573 aa17.47■□□□□ 0.39
C9orf3-221ENST00000489562 ZBTB38Q8NAP3 1195 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-221ENST00000489562 UTP14AQ9BVJ6 771 aaKnown RBP17.47■□□□□ 0.39
C9orf3-221ENST00000489562 USP44Q9H0E7 712 aa17.47■□□□□ 0.39
C9orf3-221ENST00000489562 H7C1W4 665 aa17.46■□□□□ 0.39
C9orf3-221ENST00000489562 ZBTB7BO15156 539 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-221ENST00000489562 UBTFL1P0CB47 393 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-221ENST00000489562 SUSD4Q5VX71 490 aa17.46■□□□□ 0.39
C9orf3-221ENST00000489562 NBPF5PQ86XG9 351 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-221ENST00000489562 MTFR1LQ9H019 292 aa17.46■□□□□ 0.39
C9orf3-221ENST00000489562 TRMT112Q9UI30 125 aaKnown RBP17.46■□□□□ 0.39
C9orf3-221ENST00000489562 SH3TC1Q8TE82 1336 aa17.46■□□□□ 0.38
C9orf3-221ENST00000489562 CDHR2Q9BYE9 1310 aa17.46■□□□□ 0.38
C9orf3-221ENST00000489562 DDX60Q8IY21 1712 aaKnown RBP17.45■□□□□ 0.38
C9orf3-221ENST00000489562 NTSR2O95665 410 aa17.45■□□□□ 0.38
C9orf3-221ENST00000489562 TPTE2Q6XPS3 522 aa17.45■□□□□ 0.38
C9orf3-221ENST00000489562 UBE3BQ7Z3V4 1068 aa17.45■□□□□ 0.38
C9orf3-221ENST00000489562 MEIS3Q99687 375 aa17.45■□□□□ 0.38
C9orf3-221ENST00000489562 POLRMTO00411 1230 aaKnown RBP17.44■□□□□ 0.38
C9orf3-221ENST00000489562 MMP10P09238 476 aa17.44■□□□□ 0.38
C9orf3-221ENST00000489562 IRX6P78412 446 aaPredicted RBP17.44■□□□□ 0.38
C9orf3-221ENST00000489562 PDGFDQ9GZP0 370 aaPredicted RBP17.44■□□□□ 0.38
C9orf3-221ENST00000489562 ZBTB40Q9NUA8 1239 aa17.44■□□□□ 0.38
C9orf3-221ENST00000489562 PARP3Q9Y6F1 533 aa17.44■□□□□ 0.38
C9orf3-221ENST00000489562 RIC1Q4ADV7 1423 aa17.44■□□□□ 0.38
C9orf3-221ENST00000489562 PSDA5PKW4 1024 aaPredicted RBP17.43■□□□□ 0.38
C9orf3-221ENST00000489562 NPHP1O15259 732 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 SERPINB2P05120 415 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 NBPF7P0C2Y1 421 aaPredicted RBP17.43■□□□□ 0.38
C9orf3-221ENST00000489562 GTF2E1P29083 439 aaPredicted RBP17.43■□□□□ 0.38
C9orf3-221ENST00000489562 CASP7P55210 303 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 DDR1Q08345 913 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 ERICH6BQ5W0A0 696 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 MSL1Q68DK7 614 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 CNBD1Q8NA66 436 aa17.43■□□□□ 0.38
C9orf3-221ENST00000489562 GNAI2P04899 355 aa17.42■□□□□ 0.38
C9orf3-221ENST00000489562 EXOC6Q8TAG9 804 aa17.42■□□□□ 0.38
C9orf3-221ENST00000489562 FAM89AQ96GI7 184 aa17.42■□□□□ 0.38
C9orf3-221ENST00000489562 FAM177BA6PVY3 158 aa17.41■□□□□ 0.38
C9orf3-221ENST00000489562 POLD1P28340 1107 aa17.41■□□□□ 0.38
C9orf3-221ENST00000489562 ST5P78524 1137 aa17.41■□□□□ 0.38
C9orf3-221ENST00000489562 PLA2G12BQ9BX93 195 aa17.41■□□□□ 0.38
C9orf3-221ENST00000489562 ANKRD31Q8N7Z5 1873 aa17.4■□□□□ 0.38
C9orf3-221ENST00000489562 IRS4O14654 1257 aaPredicted RBP17.4■□□□□ 0.38
C9orf3-221ENST00000489562 ZBTB7AO95365 584 aa17.4■□□□□ 0.38
C9orf3-221ENST00000489562 SLC10A5Q5PT55 438 aa17.4■□□□□ 0.38
C9orf3-221ENST00000489562 PRR5LQ6MZQ0 368 aa17.4■□□□□ 0.38
C9orf3-221ENST00000489562 KIF13BQ9NQT8 1826 aa17.4■□□□□ 0.38
C9orf3-221ENST00000489562 PDE8AO60658 829 aa17.39■□□□□ 0.37
C9orf3-221ENST00000489562 ERFEQ4G0M1 354 aa17.39■□□□□ 0.37
C9orf3-221ENST00000489562 NUTM1Q86Y26 1132 aa17.39■□□□□ 0.37
C9orf3-221ENST00000489562 SUCLG2Q96I99 432 aa17.39■□□□□ 0.37
C9orf3-221ENST00000489562 LRRFIP2Q9Y608 721 aaKnown RBP17.39■□□□□ 0.37
C9orf3-221ENST00000489562 RTL5Q5HYW3 569 aaPredicted RBP17.38■□□□□ 0.37
C9orf3-221ENST00000489562 ABCC12Q96J65 1359 aa17.38■□□□□ 0.37
C9orf3-221ENST00000489562 TNRC6CQ9HCJ0 1690 aaKnown RBP17.37■□□□□ 0.37
C9orf3-221ENST00000489562 JARID2Q92833 1246 aaPredicted RBP17.37■□□□□ 0.37
C9orf3-221ENST00000489562 MTX1Q13505 466 aa17.36■□□□□ 0.37
C9orf3-221ENST00000489562 RABL6Q3YEC7 729 aaPredicted RBP17.36■□□□□ 0.37
C9orf3-221ENST00000489562 RPAP2Q8IXW5 612 aaPredicted RBP17.36■□□□□ 0.37
C9orf3-221ENST00000489562 SYNE4Q8N205 404 aa17.36■□□□□ 0.37
C9orf3-221ENST00000489562 KAZALD1Q96I82 304 aa17.36■□□□□ 0.37
C9orf3-221ENST00000489562 NLRP3Q96P20 1036 aa17.36■□□□□ 0.37
C9orf3-221ENST00000489562 SPON1Q9HCB6 807 aa17.36■□□□□ 0.37
C9orf3-221ENST00000489562 ATF5Q9Y2D1 282 aaPredicted RBP17.36■□□□□ 0.37
C9orf3-221ENST00000489562 HCLS1P14317 486 aaPredicted RBP17.35■□□□□ 0.37
C9orf3-221ENST00000489562 CTSWP56202 376 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 FOXO4P98177 505 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 SGIP1Q9BQI5 828 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 BRIP1Q9BX63 1249 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 BICC1Q9H694 974 aaKnown RBP17.35■□□□□ 0.37
C9orf3-221ENST00000489562 C1orf115Q9H7X2 142 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 PDZRN3Q9UPQ7 1066 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 C10orf71Q711Q0 1435 aa17.35■□□□□ 0.37
C9orf3-221ENST00000489562 CSF1RP07333 972 aa17.34■□□□□ 0.37
C9orf3-221ENST00000489562 SF3B3Q15393 1217 aaKnown RBP17.34■□□□□ 0.37
C9orf3-221ENST00000489562 CEP85Q6P2H3 762 aa17.34■□□□□ 0.37
C9orf3-221ENST00000489562 ANKRD44Q8N8A2 993 aa17.34■□□□□ 0.37
C9orf3-221ENST00000489562 RTL9Q8NET4 1388 aa17.34■□□□□ 0.37
C9orf3-221ENST00000489562 DLEC1Q9Y238 1755 aa17.33■□□□□ 0.37
C9orf3-221ENST00000489562 HMMRO75330 724 aa17.33■□□□□ 0.36
C9orf3-221ENST00000489562 PDE6BP35913 854 aa17.33■□□□□ 0.36
C9orf3-221ENST00000489562 ATP8B2P98198 1209 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms