RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 PCCAP05165 728 aaPredicted RBP26.02■■□□□ 1.76
SND1-214ENST00000489417 POLA2Q14181 598 aa26.02■■□□□ 1.76
SND1-214ENST00000489417 CLEC4GQ6UXB4 293 aa26.02■■□□□ 1.76
SND1-214ENST00000489417 AMIGO3Q86WK7 504 aa26.02■■□□□ 1.76
SND1-214ENST00000489417 BICC1Q9H694 974 aaKnown RBP26.02■■□□□ 1.76
SND1-214ENST00000489417 ADRA2BP18089 450 aa26.01■■□□□ 1.75
SND1-214ENST00000489417 EP400Q96L91 3159 aa26.01■■□□□ 1.75
SND1-214ENST00000489417 UBN2Q6ZU65 1347 aa26■■□□□ 1.75
SND1-214ENST00000489417 SRGAP3O43295 1099 aa26■■□□□ 1.75
SND1-214ENST00000489417 TRAPPC3LQ5T215 181 aa26■■□□□ 1.75
SND1-214ENST00000489417 ILDR2Q71H61 639 aa26■■□□□ 1.75
SND1-214ENST00000489417 ARHGEF1Q92888 912 aaKnown RBP26■■□□□ 1.75
SND1-214ENST00000489417 UBR3Q6ZT12 1888 aa26■■□□□ 1.75
SND1-214ENST00000489417 EPHA10Q5JZY3 1008 aa25.99■■□□□ 1.75
SND1-214ENST00000489417 SKAP1Q86WV1 359 aa25.99■■□□□ 1.75
SND1-214ENST00000489417 ZBTB38Q8NAP3 1195 aaPredicted RBP25.99■■□□□ 1.75
SND1-214ENST00000489417 C4AP0C0L4 1744 aa25.99■■□□□ 1.75
SND1-214ENST00000489417 ZPR1O75312 459 aa25.98■■□□□ 1.75
SND1-214ENST00000489417 PHF14O94880 888 aa25.98■■□□□ 1.75
SND1-214ENST00000489417 NUCB1Q02818 461 aa25.98■■□□□ 1.75
SND1-214ENST00000489417 PARP10Q53GL7 1025 aa25.98■■□□□ 1.75
SND1-214ENST00000489417 RTL5Q5HYW3 569 aaPredicted RBP25.98■■□□□ 1.75
SND1-214ENST00000489417 USPL1Q5W0Q7 1092 aa25.98■■□□□ 1.75
SND1-214ENST00000489417 SRP68Q9UHB9 627 aaKnown RBP25.98■■□□□ 1.75
SND1-214ENST00000489417 BCL2L12Q9HB09 334 aa25.97■■□□□ 1.75
SND1-214ENST00000489417 NIP7Q9Y221 180 aaKnown RBP eCLIP25.97■■□□□ 1.75
SND1-214ENST00000489417 CDHR2Q9BYE9 1310 aa25.97■■□□□ 1.75
SND1-214ENST00000489417 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.97■■□□□ 1.75
SND1-214ENST00000489417 SSFA2P28290 1259 aa25.97■■□□□ 1.75
SND1-214ENST00000489417 RFC4P35249 363 aa25.97■■□□□ 1.75
SND1-214ENST00000489417 RABL6Q3YEC7 729 aaPredicted RBP25.97■■□□□ 1.75
SND1-214ENST00000489417 TRMT112Q9UI30 125 aaKnown RBP25.97■■□□□ 1.75
SND1-214ENST00000489417 USP42Q9H9J4 1324 aaKnown RBP25.96■■□□□ 1.75
SND1-214ENST00000489417 ANKRD45Q5TZF3 282 aa25.96■■□□□ 1.75
SND1-214ENST00000489417 FAM89AQ96GI7 184 aa25.96■■□□□ 1.75
SND1-214ENST00000489417 FOXO4P98177 505 aa25.95■■□□□ 1.74
SND1-214ENST00000489417 SUSD4Q5VX71 490 aa25.95■■□□□ 1.74
SND1-214ENST00000489417 CHD1LQ86WJ1 897 aa25.95■■□□□ 1.74
SND1-214ENST00000489417 SF3B2Q13435 895 aaKnown RBP25.94■■□□□ 1.74
SND1-214ENST00000489417 AKT1S1Q96B36 256 aa25.94■■□□□ 1.74
SND1-214ENST00000489417 UTP14AQ9BVJ6 771 aaKnown RBP25.94■■□□□ 1.74
SND1-214ENST00000489417 PLA2G12BQ9BX93 195 aa25.94■■□□□ 1.74
SND1-214ENST00000489417 ZNF827Q17R98 1081 aa25.93■■□□□ 1.74
SND1-214ENST00000489417 CAMKK2Q96RR4 588 aa25.93■■□□□ 1.74
SND1-214ENST00000489417 EXOC6BQ9Y2D4 811 aa25.93■■□□□ 1.74
SND1-214ENST00000489417 RGS3P49796 1198 aa25.92■■□□□ 1.74
SND1-214ENST00000489417 EN1Q05925 392 aaPredicted RBP25.92■■□□□ 1.74
SND1-214ENST00000489417 LMBR1LQ6UX01 489 aa25.92■■□□□ 1.74
SND1-214ENST00000489417 SURF6O75683 361 aaKnown RBP25.91■■□□□ 1.74
SND1-214ENST00000489417 BAG6P46379 1132 aa25.91■■□□□ 1.74
SND1-214ENST00000489417 EZH2Q15910 746 aaKnown RBP25.91■■□□□ 1.74
SND1-214ENST00000489417 TBC1D9BQ66K14 1250 aa25.91■■□□□ 1.74
SND1-214ENST00000489417 LNPKQ9C0E8 428 aa25.91■■□□□ 1.74
SND1-214ENST00000489417 ZBTB47Q9UFB7 747 aaPredicted RBP25.91■■□□□ 1.74
SND1-214ENST00000489417 SH3TC1Q8TE82 1336 aa25.91■■□□□ 1.74
SND1-214ENST00000489417 NTSR2O95665 410 aa25.9■■□□□ 1.74
SND1-214ENST00000489417 SYNE4Q8N205 404 aa25.9■■□□□ 1.74
SND1-214ENST00000489417 NOP58Q9Y2X3 529 aaKnown RBP25.9■■□□□ 1.74
SND1-214ENST00000489417 FAM177BA6PVY3 158 aa25.89■■□□□ 1.74
SND1-214ENST00000489417 APBB1O00213 710 aa25.89■■□□□ 1.74
SND1-214ENST00000489417 IRS4O14654 1257 aaPredicted RBP25.89■■□□□ 1.74
SND1-214ENST00000489417 TFCP2L1Q9NZI6 479 aa25.89■■□□□ 1.74
SND1-214ENST00000489417 RAB11FIP3O75154 756 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 PDE4AP27815 886 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 HSP90AB4PQ58FF6 505 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 BICDL1Q6ZP65 573 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 COL24A1Q17RW2 1714 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 RFX5P48382 616 aaPredicted RBP25.88■■□□□ 1.73
SND1-214ENST00000489417 SETDB2Q96T68 719 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 PA2G4Q9UQ80 394 aaKnown RBP25.88■■□□□ 1.73
SND1-214ENST00000489417 CHMP3Q9Y3E7 222 aa25.88■■□□□ 1.73
SND1-214ENST00000489417 PDE8AO60658 829 aa25.87■■□□□ 1.73
SND1-214ENST00000489417 FLAD1Q8NFF5 587 aa25.86■■□□□ 1.73
SND1-214ENST00000489417 LRRCC1Q9C099 1032 aa25.86■■□□□ 1.73
SND1-214ENST00000489417 TUBGCP6Q96RT7 1819 aa25.85■■□□□ 1.73
SND1-214ENST00000489417 SMARCA5O60264 1052 aaPredicted RBP25.85■■□□□ 1.73
SND1-214ENST00000489417 CSF1RP07333 972 aa25.85■■□□□ 1.73
SND1-214ENST00000489417 HSP90B1P14625 803 aaKnown RBP25.85■■□□□ 1.73
SND1-214ENST00000489417 COPRSQ9NQ92 184 aa25.85■■□□□ 1.73
SND1-214ENST00000489417 LAMB2P55268 1798 aa25.84■■□□□ 1.73
SND1-214ENST00000489417 GYS1P13807 737 aa25.84■■□□□ 1.73
SND1-214ENST00000489417 CTSWP56202 376 aa25.84■■□□□ 1.73
SND1-214ENST00000489417 OS9Q13438 667 aaPredicted RBP25.84■■□□□ 1.73
SND1-214ENST00000489417 NYXQ9GZU5 481 aa25.84■■□□□ 1.73
SND1-214ENST00000489417 PTPN12Q05209 780 aaKnown RBP25.83■■□□□ 1.73
SND1-214ENST00000489417 DEFB132Q7Z7B7 95 aa25.83■■□□□ 1.73
SND1-214ENST00000489417 NUTM1Q86Y26 1132 aa25.83■■□□□ 1.73
SND1-214ENST00000489417 CCDC125Q86Z20 511 aa25.83■■□□□ 1.73
SND1-214ENST00000489417 KIF1BPQ96EK5 621 aa25.83■■□□□ 1.73
SND1-214ENST00000489417 HCLS1P14317 486 aaPredicted RBP25.82■■□□□ 1.72
SND1-214ENST00000489417 G3BP1Q13283 466 aaKnown RBP eCLIP25.82■■□□□ 1.723e-9■■□□□ 13.9
SND1-214ENST00000489417 ERC1Q8IUD2 1116 aa25.82■■□□□ 1.72
SND1-214ENST00000489417 KLHDC4Q8TBB5 520 aa25.82■■□□□ 1.72
SND1-214ENST00000489417 RHPN1Q8TCX5 695 aa25.82■■□□□ 1.72
SND1-214ENST00000489417 CARMIL3Q8ND23 1372 aa25.82■■□□□ 1.72
SND1-214ENST00000489417 DDX60Q8IY21 1712 aaKnown RBP25.82■■□□□ 1.72
SND1-214ENST00000489417 NFIXQ14938 502 aa25.81■■□□□ 1.72
SND1-214ENST00000489417 FAM161AQ3B820 660 aa25.81■■□□□ 1.72
SND1-214ENST00000489417 NBPF5PQ86XG9 351 aaPredicted RBP25.81■■□□□ 1.72
SND1-214ENST00000489417 COL23A1Q86Y22 540 aaPredicted RBP25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms