RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.77□□□□□ -1.33
SCN1A-205ENST00000473295 TGFBR3LH3BV60 316 aa6.76□□□□□ -1.33
SCN1A-205ENST00000473295 ITGB2P05107 769 aa6.76□□□□□ -1.33
SCN1A-205ENST00000473295 EPB42P16452 691 aa6.76□□□□□ -1.33
SCN1A-205ENST00000473295 ZNF280CQ8ND82 737 aa6.76□□□□□ -1.33
SCN1A-205ENST00000473295 SPATA31C1P0DKV0 1188 aa6.75□□□□□ -1.33
SCN1A-205ENST00000473295 ADH7P40394 386 aa6.75□□□□□ -1.33
SCN1A-205ENST00000473295 FAM200AQ8TCP9 573 aa6.75□□□□□ -1.33
SCN1A-205ENST00000473295 VTI1AQ96AJ9 217 aa6.75□□□□□ -1.33
SCN1A-205ENST00000473295 PRDM6Q9NQX0 595 aa6.75□□□□□ -1.33
SCN1A-205ENST00000473295 RFX1P22670 979 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 PRRT3Q5FWE3 981 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 CFAP70Q5T0N1 1121 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 BHMTQ93088 406 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 PNMA5Q96PV4 448 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 ARXQ96QS3 562 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 PLVAPQ9BX97 442 aa6.74□□□□□ -1.33
SCN1A-205ENST00000473295 ZNF777Q9ULD5 760 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-205ENST00000473295 M0R082 166 aa6.73□□□□□ -1.33
SCN1A-205ENST00000473295 BAG6P46379 1132 aa6.73□□□□□ -1.33
SCN1A-205ENST00000473295 ZNF417Q8TAU3 575 aa6.73□□□□□ -1.33
SCN1A-205ENST00000473295 TRIM11Q96F44 468 aa6.73□□□□□ -1.33
SCN1A-205ENST00000473295 ZNF587Q96SQ5 575 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-205ENST00000473295 C11orf16Q9NQ32 467 aa6.73□□□□□ -1.33
SCN1A-205ENST00000473295 C1QTNF9BB2RNN3 333 aa6.72□□□□□ -1.33
SCN1A-205ENST00000473295 ADAM23O75077 832 aa6.72□□□□□ -1.33
SCN1A-205ENST00000473295 WEE1P30291 646 aa6.72□□□□□ -1.33
SCN1A-205ENST00000473295 SWI5Q1ZZU3 235 aa6.72□□□□□ -1.33
SCN1A-205ENST00000473295 RAB44Q7Z6P3 723 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-205ENST00000473295 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 CCINQ13939 588 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 PCSK7Q16549 785 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 MICALL1Q8N3F8 863 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 MYO19Q96H55 970 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 NACC1Q96RE7 527 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 KRTAP4-6Q9BYQ5 205 aa6.71□□□□□ -1.34
SCN1A-205ENST00000473295 UBE2OQ9C0C9 1292 aaKnown RBP6.71□□□□□ -1.34
SCN1A-205ENST00000473295 K7ELQ4 463 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-205ENST00000473295 APBA3O96018 575 aa6.7□□□□□ -1.34
SCN1A-205ENST00000473295 ALBP02768 609 aa6.7□□□□□ -1.34
SCN1A-205ENST00000473295 ARSDP51689 593 aa6.7□□□□□ -1.34
SCN1A-205ENST00000473295 ELOAQ14241 798 aaKnown RBP6.7□□□□□ -1.34
SCN1A-205ENST00000473295 C11orf91Q3C1V1 193 aa6.7□□□□□ -1.34
SCN1A-205ENST00000473295 CD163Q86VB7 1156 aa6.7□□□□□ -1.34
SCN1A-205ENST00000473295 DMGDHQ9UI17 866 aaKnown RBP6.7□□□□□ -1.34
SCN1A-205ENST00000473295 NOVA2Q9UNW9 492 aaKnown RBP6.7□□□□□ -1.34
SCN1A-205ENST00000473295 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-205ENST00000473295 LILRB5O75023 590 aa6.69□□□□□ -1.34
SCN1A-205ENST00000473295 CHRNA4P43681 627 aa6.69□□□□□ -1.34
SCN1A-205ENST00000473295 IDH3AP50213 366 aa6.69□□□□□ -1.34
SCN1A-205ENST00000473295 TRIM28Q13263 835 aaKnown RBP6.69□□□□□ -1.34
SCN1A-205ENST00000473295 DGKZQ13574 1117 aa6.69□□□□□ -1.34
SCN1A-205ENST00000473295 GSX2Q9BZM3 304 aa6.69□□□□□ -1.34
SCN1A-205ENST00000473295 STARD13Q9Y3M8 1113 aa6.69□□□□□ -1.34
SCN1A-205ENST00000473295 LGR5O75473 907 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 ARID4AP29374 1257 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-205ENST00000473295 GATA4P43694 442 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 TBC1D8BQ0IIM8 1120 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 C20orf204Q6ZNR8 217 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 QTRT2Q9H974 415 aaKnown RBP6.68□□□□□ -1.34
SCN1A-205ENST00000473295 KLK14Q9P0G3 267 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 SLC6A14Q9UN76 642 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 BCS1LQ9Y276 419 aa6.68□□□□□ -1.34
SCN1A-205ENST00000473295 ACIN1Q9UKV3 1341 aaKnown RBP6.68□□□□□ -1.34
SCN1A-205ENST00000473295 NID1P14543 1247 aa6.67□□□□□ -1.34
SCN1A-205ENST00000473295 NFKB1P19838 968 aa6.67□□□□□ -1.34
SCN1A-205ENST00000473295 INPP5BP32019 993 aa6.67□□□□□ -1.34
SCN1A-205ENST00000473295 IGFLR1Q9H665 355 aa6.67□□□□□ -1.34
SCN1A-205ENST00000473295 DNAJB12Q9NXW2 375 aaKnown RBP6.67□□□□□ -1.34
SCN1A-205ENST00000473295 MICAL2O94851 1124 aa6.66□□□□□ -1.34
SCN1A-205ENST00000473295 MAP3K6O95382 1288 aa6.66□□□□□ -1.34
SCN1A-205ENST00000473295 COL9A3Q14050 684 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-205ENST00000473295 CDCA8Q53HL2 280 aa6.66□□□□□ -1.34
SCN1A-205ENST00000473295 TRAPPC3LQ5T215 181 aa6.66□□□□□ -1.34
SCN1A-205ENST00000473295 JPH1Q9HDC5 661 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-205ENST00000473295 RAC1P63000 192 aa6.65□□□□□ -1.34
SCN1A-205ENST00000473295 COL26A1Q96A83 441 aa6.65□□□□□ -1.34
SCN1A-205ENST00000473295 C9orf172C9J069 976 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 RGS9O75916 674 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-205ENST00000473295 ATG7O95352 703 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 FURINP09958 794 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 PSAPL1Q6NUJ1 521 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 C8orf86Q6ZUL3 223 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 IFT43Q96FT9 208 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 ZMYND15Q9H091 742 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 FRRS1LQ9P0K9 344 aa6.64□□□□□ -1.35
SCN1A-205ENST00000473295 EGFRP00533 1210 aa6.63□□□□□ -1.35
SCN1A-205ENST00000473295 RARAP10276 462 aa6.63□□□□□ -1.35
SCN1A-205ENST00000473295 FKBP5Q13451 457 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-205ENST00000473295 DHX32Q7L7V1 743 aaKnown RBP6.63□□□□□ -1.35
SCN1A-205ENST00000473295 FAM35AQ86V20 835 aa6.63□□□□□ -1.35
SCN1A-205ENST00000473295 CCDC97Q96F63 343 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-205ENST00000473295 FAM13BQ9NYF5 915 aa6.63□□□□□ -1.35
SCN1A-205ENST00000473295 PTCD1O75127 700 aaKnown RBP6.62□□□□□ -1.35
SCN1A-205ENST00000473295 ELNP15502 786 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 BRD2P25440 801 aaKnown RBP6.62□□□□□ -1.35
SCN1A-205ENST00000473295 GPLD1P80108 840 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 NRG1Q02297 640 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-205ENST00000473295 TREML1Q86YW5 311 aa6.62□□□□□ -1.35
SCN1A-205ENST00000473295 TRPM4Q8TD43 1214 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms