RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 CHIC2Q9UKJ5 165 aa11.08□□□□□ -0.64
SCN9A-206ENST00000472119 RAB44Q7Z6P3 723 aaPredicted RBP11.07□□□□□ -0.64
SCN9A-206ENST00000472119 NEUROD1Q13562 356 aa11.06□□□□□ -0.64
SCN9A-206ENST00000472119 TBC1D2BQ9UPU7 963 aa11.06□□□□□ -0.64
SCN9A-206ENST00000472119 ELNP15502 786 aa11.05□□□□□ -0.64
SCN9A-206ENST00000472119 CUL7Q14999 1698 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 NUP160Q12769 1436 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 EEA1Q15075 1411 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 A0A0A0MRY4 1105 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 LILRB5O75023 590 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 SPEM2Q0P670 501 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 SHISA2Q6UWI4 295 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 C20orf204Q6ZNR8 217 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 PLPP7Q8NBV4 271 aa11.04□□□□□ -0.64
SCN9A-206ENST00000472119 NRG1Q02297 640 aaPredicted RBP11.03□□□□□ -0.64
SCN9A-206ENST00000472119 MAP7D1Q3KQU3 841 aa11.03□□□□□ -0.64
SCN9A-206ENST00000472119 RAPGEF2Q9Y4G8 1499 aa11.03□□□□□ -0.64
SCN9A-206ENST00000472119 CEP170Q5SW79 1584 aa11.03□□□□□ -0.64
SCN9A-206ENST00000472119 PRXQ9BXM0 1461 aa11.02□□□□□ -0.65
SCN9A-206ENST00000472119 RAC1P63000 192 aa11.02□□□□□ -0.65
SCN9A-206ENST00000472119 ZDHHC1Q8WTX9 485 aa11.02□□□□□ -0.65
SCN9A-206ENST00000472119 L3MBTL2Q969R5 705 aa11.02□□□□□ -0.65
SCN9A-206ENST00000472119 LENG1Q96BZ8 264 aaPredicted RBP11.02□□□□□ -0.65
SCN9A-206ENST00000472119 USP21Q9UK80 565 aa11.02□□□□□ -0.65
SCN9A-206ENST00000472119 CLASP1Q7Z460 1538 aa11.01□□□□□ -0.65
SCN9A-206ENST00000472119 MCTP1Q6DN14 999 aa11.01□□□□□ -0.65
SCN9A-206ENST00000472119 TBC1D8BQ0IIM8 1120 aa11□□□□□ -0.65
SCN9A-206ENST00000472119 BACH1O14867 736 aa10.99□□□□□ -0.65
SCN9A-206ENST00000472119 VAC14Q08AM6 782 aa10.99□□□□□ -0.65
SCN9A-206ENST00000472119 ZNF232Q9UNY5 417 aa10.99□□□□□ -0.65
SCN9A-206ENST00000472119 EML1O00423 815 aa10.98□□□□□ -0.65
SCN9A-206ENST00000472119 NOS2P35228 1153 aa10.98□□□□□ -0.65
SCN9A-206ENST00000472119 IRF5Q13568 498 aa10.98□□□□□ -0.65
SCN9A-206ENST00000472119 SCHIP1Q9P0W5 487 aaPredicted RBP10.98□□□□□ -0.65
SCN9A-206ENST00000472119 JPH1Q9HDC5 661 aaPredicted RBP10.97□□□□□ -0.65
SCN9A-206ENST00000472119 PRM3Q9NNZ6 103 aa10.97□□□□□ -0.65
SCN9A-206ENST00000472119 KIAA0586Q9BVV6 1533 aa10.97□□□□□ -0.65
SCN9A-206ENST00000472119 ARHGEF11O15085 1522 aa10.96□□□□□ -0.65
SCN9A-206ENST00000472119 TEAD4Q15561 434 aa10.96□□□□□ -0.65
SCN9A-206ENST00000472119 RHPN1Q8TCX5 695 aa10.96□□□□□ -0.65
SCN9A-206ENST00000472119 BRD7Q9NPI1 651 aa10.96□□□□□ -0.65
SCN9A-206ENST00000472119 RNF112Q9ULX5 631 aa10.96□□□□□ -0.65
SCN9A-206ENST00000472119 TBCELQ5QJ74 424 aa10.95□□□□□ -0.66
SCN9A-206ENST00000472119 CYB5RLQ6IPT4 315 aa10.95□□□□□ -0.66
SCN9A-206ENST00000472119 NUDT8Q8WV74 236 aa10.95□□□□□ -0.66
SCN9A-206ENST00000472119 CEP63Q96MT8 703 aa10.95□□□□□ -0.66
SCN9A-206ENST00000472119 SSBP4Q9BWG4 385 aaPredicted RBP10.95□□□□□ -0.66
SCN9A-206ENST00000472119 UBE2OQ9C0C9 1292 aaKnown RBP10.95□□□□□ -0.66
SCN9A-206ENST00000472119 IGFLR1Q9H665 355 aa10.95□□□□□ -0.66
SCN9A-206ENST00000472119 PCDHGA11Q9Y5H2 935 aa10.95□□□□□ -0.66
SCN9A-206ENST00000472119 GPC6Q9Y625 555 aaPredicted RBP10.95□□□□□ -0.66
SCN9A-206ENST00000472119 PRG4Q92954 1404 aaPredicted RBP10.94□□□□□ -0.66
SCN9A-206ENST00000472119 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.94□□□□□ -0.66
SCN9A-206ENST00000472119 BHMTQ93088 406 aa10.94□□□□□ -0.66
SCN9A-206ENST00000472119 PAX4O43316 350 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 UBTFP17480 764 aaKnown RBP10.93□□□□□ -0.66
SCN9A-206ENST00000472119 NEUROD2Q15784 382 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 SLC9A9Q8IVB4 645 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 ZNF358Q9NW07 568 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 RIMBP3CA6NJZ7 1639 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 RIMBP3BA6NNM3 1639 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 RIMBP3Q9UFD9 1639 aa10.93□□□□□ -0.66
SCN9A-206ENST00000472119 ERCC6L2Q5T890 1561 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 COBLO75128 1261 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 RANGAP1P46060 587 aaPredicted RBP10.92□□□□□ -0.66
SCN9A-206ENST00000472119 PSME1Q06323 249 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 SH3PXD2AQ5TCZ1 1133 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 DMRTC2Q8IXT2 367 aaPredicted RBP10.92□□□□□ -0.66
SCN9A-206ENST00000472119 FMR1NBQ8N0W7 255 aaPredicted RBP10.92□□□□□ -0.66
SCN9A-206ENST00000472119 C7orf43Q8WVR3 580 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 HSH2DQ96JZ2 352 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 KCNH4Q9UQ05 1017 aa10.92□□□□□ -0.66
SCN9A-206ENST00000472119 PCMTD2Q9NV79 361 aa10.91□□□□□ -0.66
SCN9A-206ENST00000472119 SLC6A14Q9UN76 642 aa10.91□□□□□ -0.66
SCN9A-206ENST00000472119 TTBK1Q5TCY1 1321 aaPredicted RBP10.9□□□□□ -0.66
SCN9A-206ENST00000472119 SERTM1A2A2V5 107 aa10.9□□□□□ -0.66
SCN9A-206ENST00000472119 SFI1A8K8P3 1242 aa10.9□□□□□ -0.66
SCN9A-206ENST00000472119 SEMA3FQ13275 785 aa10.9□□□□□ -0.66
SCN9A-206ENST00000472119 KIF21BO75037 1637 aa10.9□□□□□ -0.66
SCN9A-206ENST00000472119 SHROOM2Q13796 1616 aa10.9□□□□□ -0.66
SCN9A-206ENST00000472119 IQGAP2Q13576 1575 aa10.9□□□□□ -0.67
SCN9A-206ENST00000472119 ARAP1Q96P48 1450 aa10.89□□□□□ -0.67
SCN9A-206ENST00000472119 GOLGA3Q08378 1498 aa10.88□□□□□ -0.67
SCN9A-206ENST00000472119 TXKP42681 527 aa10.88□□□□□ -0.67
SCN9A-206ENST00000472119 AFF1P51825 1210 aaKnown RBP10.88□□□□□ -0.67
SCN9A-206ENST00000472119 GTF2IP78347 998 aa10.88□□□□□ -0.67
SCN9A-206ENST00000472119 EML3Q32P44 896 aa10.88□□□□□ -0.67
SCN9A-206ENST00000472119 TNS4Q8IZW8 715 aa10.88□□□□□ -0.67
SCN9A-206ENST00000472119 COL17A1Q9UMD9 1497 aaPredicted RBP10.87□□□□□ -0.67
SCN9A-206ENST00000472119 KCNQ4P56696 695 aa10.87□□□□□ -0.67
SCN9A-206ENST00000472119 PSAPL1Q6NUJ1 521 aa10.87□□□□□ -0.67
SCN9A-206ENST00000472119 WFDC12Q8WWY7 111 aa10.87□□□□□ -0.67
SCN9A-206ENST00000472119 ANKIB1Q9P2G1 1089 aa10.87□□□□□ -0.67
SCN9A-206ENST00000472119 NOD1Q9Y239 953 aa10.87□□□□□ -0.67
SCN9A-206ENST00000472119 CARMIL2Q6F5E8 1435 aa10.86□□□□□ -0.67
SCN9A-206ENST00000472119 LOC105371045A0A1W2PR82 267 aa10.86□□□□□ -0.67
SCN9A-206ENST00000472119 PIK3CDO00329 1044 aa10.86□□□□□ -0.67
SCN9A-206ENST00000472119 IREB2P48200 963 aaKnown RBP10.86□□□□□ -0.67
SCN9A-206ENST00000472119 EPHA4P54764 986 aa10.86□□□□□ -0.67
SCN9A-206ENST00000472119 TYRO3Q06418 890 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms