RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 USP48Q86UV5 1035 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 EVA1CP58658 441 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 EIF4A2Q14240 407 aaKnown RBP6.38□□□□□ -1.39
SYNE1-220ENST00000471834 NCAPHQ15003 741 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 SWT1Q5T5J6 900 aaKnown RBP6.38□□□□□ -1.39
SYNE1-220ENST00000471834 TMED8Q6PL24 325 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-220ENST00000471834 CNKSR2Q8WXI2 1034 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 R3HCC1Q9Y3T6 440 aaKnown RBP6.38□□□□□ -1.39
SYNE1-220ENST00000471834 WDR19Q8NEZ3 1342 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 KDM3BQ7LBC6 1761 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 ANKRD45Q5TZF3 282 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 RNF20Q5VTR2 975 aa6.38□□□□□ -1.39
SYNE1-220ENST00000471834 CPP00450 1065 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 USP5P45974 858 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 SPATA20Q8TB22 786 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 TSPYL1Q9H0U9 437 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 STX6O43752 255 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 HDGFL2Q7Z4V5 671 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-220ENST00000471834 MTA3Q9BTC8 594 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 UNC5CLQ8IV45 518 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 KAZALD1Q96I82 304 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 UTP14AQ9BVJ6 771 aaKnown RBP6.37□□□□□ -1.39
SYNE1-220ENST00000471834 ABCC12Q96J65 1359 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 GADD45BO75293 160 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-220ENST00000471834 CAPN2P17655 700 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 ZSCAN25Q6NSZ9 544 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 ZC3H4Q9UPT8 1303 aaKnown RBP6.37□□□□□ -1.39
SYNE1-220ENST00000471834 ZNF75DP51815 510 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 RABL6Q3YEC7 729 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-220ENST00000471834 BEND3Q5T5X7 828 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 TMEM132EQ6IEE7 984 aa6.37□□□□□ -1.39
SYNE1-220ENST00000471834 WDR17Q8IZU2 1322 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 IKBKBO14920 756 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 RPAINQ86UA6 219 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 CACTINQ8WUQ7 758 aaKnown RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 IMPACTQ9P2X3 320 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 SRRM3A6NNA2 597 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 RIOK3O14730 519 aaKnown RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 KMT5BQ4FZB7 885 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 TRIM65Q6PJ69 517 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 RSRC2Q7L4I2 434 aaKnown RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 MAP3K19Q56UN5 1328 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 HMGB2P26583 209 aaKnown RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 RESTQ13127 1097 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 ZNF397Q8NF99 534 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 ADCY5O95622 1261 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 CT47A1Q5JQC4 288 aaPredicted RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 LLPHQ9BRT6 129 aaKnown RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 PDCP20941 246 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 NEK4P51957 841 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 KRT24Q2M2I5 525 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 HPSEQ9Y251 543 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 DDX60Q8IY21 1712 aaKnown RBP6.36□□□□□ -1.39
SYNE1-220ENST00000471834 ROBO2Q9HCK4 1378 aa6.36□□□□□ -1.39
SYNE1-220ENST00000471834 CCAR2Q8N163 923 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 C1orf131Q8NDD1 294 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 CABP1Q9NZU7 370 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 CGNQ9P2M7 1197 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 HSP90B1P14625 803 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 REXO1L1PQ8IX06 675 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 SRRTQ9BXP5 876 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 TBX22Q9Y458 520 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 SH2B2O14492 632 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 GNL2Q13823 731 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 PSME1Q06323 249 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 TBX2Q13207 712 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 NOL8Q76FK4 1167 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 MSANTD4Q8NCY6 345 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 GPR108Q9NPR9 543 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 CACNA1FO60840 1977 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 FOXD4L5Q5VV16 416 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 FOXD4L4Q8WXT5 416 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 A1CFQ9NQ94 594 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 DIP2BQ9P265 1576 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 HCLS1P14317 486 aaPredicted RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 SNW1Q13573 536 aaKnown RBP6.35□□□□□ -1.39
SYNE1-220ENST00000471834 CABP2Q9NPB3 220 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 COPRSQ9NQ92 184 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 HMG20BQ9P0W2 317 aa6.35□□□□□ -1.39
SYNE1-220ENST00000471834 TADA3O75528 432 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 LRRC10BA6NIK2 292 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 CCDC144BQ3MJ40 725 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 AXDND1Q5T1B0 1012 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 E4F1Q66K89 784 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 CCDC144CPQ8IYA2 1237 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 RHPN1Q8TCX5 695 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 TIGD1Q96MW7 591 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 BEGAINQ9BUH8 593 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 PNMA6EA0A0J9YXQ4 647 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 MCCP23508 829 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 ETF1P62495 437 aaKnown RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 MCTP1Q6DN14 999 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 TTC12Q9H892 705 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 RBM27Q9P2N5 1060 aaKnown RBP6.34□□□□□ -1.39
SYNE1-220ENST00000471834 HSP90AB4PQ58FF6 505 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 NBPF11Q86T75 865 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 PRM3Q9NNZ6 103 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 DLG5Q8TDM6 1919 aa6.34□□□□□ -1.39
SYNE1-220ENST00000471834 PHLPP2Q6ZVD8 1323 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms