RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 SULT6B1Q6IMI4 303 aa11.72□□□□□ -0.53
HDAC3-205ENST00000469550 GPBP1L1Q9HC44 474 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-205ENST00000469550 UBR2Q8IWV8 1755 aa11.72□□□□□ -0.53
HDAC3-205ENST00000469550 FCHSD2O94868 740 aa11.72□□□□□ -0.53
HDAC3-205ENST00000469550 CCDC87Q9NVE4 849 aa11.72□□□□□ -0.53
HDAC3-205ENST00000469550 DIAPH1O60610 1272 aaKnown RBP11.71□□□□□ -0.53
HDAC3-205ENST00000469550 RFC4P35249 363 aa11.71□□□□□ -0.53
HDAC3-205ENST00000469550 AKAP4Q5JQC9 854 aa11.71□□□□□ -0.53
HDAC3-205ENST00000469550 MRPL50Q8N5N7 158 aaKnown RBP11.71□□□□□ -0.53
HDAC3-205ENST00000469550 LMBRD1Q9NUN5 540 aa11.71□□□□□ -0.53
HDAC3-205ENST00000469550 KCPQ6ZWJ8 1503 aa11.71□□□□□ -0.54
HDAC3-205ENST00000469550 CRKLP46109 303 aaKnown RBP11.7□□□□□ -0.54
HDAC3-205ENST00000469550 ZSCAN23Q3MJ62 389 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 ABCC4O15439 1325 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 USP42Q9H9J4 1324 aaKnown RBP11.7□□□□□ -0.54
HDAC3-205ENST00000469550 NRXN2Q9P2S2 1712 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 VAMP4O75379 141 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 CSPP1Q1MSJ5 1256 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 MTERF4Q7Z6M4 381 aaKnown RBP11.7□□□□□ -0.54
HDAC3-205ENST00000469550 NFATC2IPQ8NCF5 419 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 FOXD4L1Q9NU39 408 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 PARP3Q9Y6F1 533 aa11.7□□□□□ -0.54
HDAC3-205ENST00000469550 SIRT2Q8IXJ6 389 aa11.69□□□□□ -0.54
HDAC3-205ENST00000469550 SLC52A2Q9HAB3 445 aa11.69□□□□□ -0.54
HDAC3-205ENST00000469550 DLEC1Q9Y238 1755 aa11.69□□□□□ -0.54
HDAC3-205ENST00000469550 PTCD1O75127 700 aaKnown RBP11.68□□□□□ -0.54
HDAC3-205ENST00000469550 INTS5Q6P9B9 1019 aaKnown RBP11.68□□□□□ -0.54
HDAC3-205ENST00000469550 SIPA1L3O60292 1781 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-205ENST00000469550 SOS1Q07889 1333 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-205ENST00000469550 DPEP1P16444 411 aa11.68□□□□□ -0.54
HDAC3-205ENST00000469550 MCTP1Q6DN14 999 aa11.68□□□□□ -0.54
HDAC3-205ENST00000469550 USP26Q9BXU7 913 aa11.68□□□□□ -0.54
HDAC3-205ENST00000469550 GOLGB1Q14789 3259 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 AFDNP55196 1824 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 A0A0G2JLW4 131 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 KIF3CO14782 793 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 KCNA3P22001 575 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 PLEKHM2Q8IWE5 1019 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 API5Q9BZZ5 524 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 RBSNQ9H1K0 784 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 DCTPP1Q9H773 170 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 ZKSCAN5Q9Y2L8 839 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 RNMTO43148 476 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 GSPT1P15170 499 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 HSPA6P17066 643 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 DDR1Q08345 913 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 TTC22Q5TAA0 569 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 CAVIN1Q6NZI2 390 aaKnown RBP11.67□□□□□ -0.54
HDAC3-205ENST00000469550 IFT57Q9NWB7 429 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 WWC3Q9ULE0 1092 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 BCS1LQ9Y276 419 aa11.67□□□□□ -0.54
HDAC3-205ENST00000469550 ZNF853P0CG23 659 aa11.66□□□□□ -0.54
HDAC3-205ENST00000469550 TM4SF1P30408 202 aa11.66□□□□□ -0.54
HDAC3-205ENST00000469550 GNAI1P63096 354 aa11.66□□□□□ -0.54
HDAC3-205ENST00000469550 INTS3Q68E01 1043 aaKnown RBP11.66□□□□□ -0.54
HDAC3-205ENST00000469550 SRP68Q9UHB9 627 aaKnown RBP11.66□□□□□ -0.54
HDAC3-205ENST00000469550 DYNC1I1O14576 645 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 ST18O60284 1047 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 CYP19A1P11511 503 aaPredicted RBP11.65□□□□□ -0.54
HDAC3-205ENST00000469550 LRSAM1Q6UWE0 723 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 DNAJC10Q8IXB1 793 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 LGR6Q9HBX8 967 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 CCDC39Q9UFE4 941 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 SBF1O95248 1867 aa11.65□□□□□ -0.54
HDAC3-205ENST00000469550 SCN7AQ01118 1682 aa11.65□□□□□ -0.55
HDAC3-205ENST00000469550 POLRMTO00411 1230 aaKnown RBP11.65□□□□□ -0.55
HDAC3-205ENST00000469550 NFE2L2Q16236 605 aa11.65□□□□□ -0.55
HDAC3-205ENST00000469550 ZNF526Q8TF50 670 aaPredicted RBP11.65□□□□□ -0.55
HDAC3-205ENST00000469550 R3HCC1Q9Y3T6 440 aaKnown RBP11.65□□□□□ -0.55
HDAC3-205ENST00000469550 MTHFSDQ2M296 383 aaKnown RBP11.64□□□□□ -0.55
HDAC3-205ENST00000469550 C1orf115Q9H7X2 142 aa11.64□□□□□ -0.55
HDAC3-205ENST00000469550 PIM2Q9P1W9 311 aa11.64□□□□□ -0.55
HDAC3-205ENST00000469550 COL15A1P39059 1388 aa11.64□□□□□ -0.55
HDAC3-205ENST00000469550 TNRC6CQ9HCJ0 1690 aaKnown RBP11.64□□□□□ -0.55
HDAC3-205ENST00000469550 MBD3O95983 291 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 HMOX1P09601 288 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 NCLP19338 710 aaKnown RBP11.63□□□□□ -0.55
HDAC3-205ENST00000469550 CASC1Q6TDU7 716 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 GPT2Q8TD30 523 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 NARFQ9UHQ1 456 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 PRKAR2BP31323 418 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 DALRD3Q5D0E6 543 aaKnown RBP11.63□□□□□ -0.55
HDAC3-205ENST00000469550 ARHGAP27Q6ZUM4 889 aa11.63□□□□□ -0.55
HDAC3-205ENST00000469550 ZPR1O75312 459 aa11.62□□□□□ -0.55
HDAC3-205ENST00000469550 PRPF40AO75400 957 aaKnown RBP11.62□□□□□ -0.55
HDAC3-205ENST00000469550 REC8O95072 547 aa11.62□□□□□ -0.55
HDAC3-205ENST00000469550 SASS6Q6UVJ0 657 aa11.62□□□□□ -0.55
HDAC3-205ENST00000469550 RPAP2Q8IXW5 612 aaPredicted RBP11.62□□□□□ -0.55
HDAC3-205ENST00000469550 ZDHHC9Q9Y397 364 aa11.62□□□□□ -0.55
HDAC3-205ENST00000469550 UQCRHLA0A096LP55 91 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 UQCRHP07919 91 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 LMOD3Q0VAK6 560 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 SLC39A6Q13433 755 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 USPL1Q5W0Q7 1092 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 TSPYL6Q8N831 410 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 ANKRD44Q8N8A2 993 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 ZBTB1Q9Y2K1 713 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 TOMM70O94826 608 aa11.61□□□□□ -0.55
HDAC3-205ENST00000469550 MCM2P49736 904 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms