RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SETXQ7Z333 2677 aaKnown RBP8.01□□□□□ -1.13
HMGB1-207ENST00000468384 KIAA0100Q14667 2235 aaKnown RBP8.01□□□□□ -1.13
HMGB1-207ENST00000468384 DDNO94850 711 aaPredicted RBP8.01□□□□□ -1.13
HMGB1-207ENST00000468384 AKAP4Q5JQC9 854 aa8.01□□□□□ -1.13
HMGB1-207ENST00000468384 ZNF598Q86UK7 904 aaKnown RBP8.01□□□□□ -1.13
HMGB1-207ENST00000468384 MTMR10Q9NXD2 777 aa8.01□□□□□ -1.13
HMGB1-207ENST00000468384 STK26Q9P289 416 aa8.01□□□□□ -1.13
HMGB1-207ENST00000468384 TIAM2Q8IVF5 1701 aa8□□□□□ -1.13
HMGB1-207ENST00000468384 KAT6BQ8WYB5 2073 aa8□□□□□ -1.13
HMGB1-207ENST00000468384 PPP1R3GB7ZBB8 358 aa8□□□□□ -1.13
HMGB1-207ENST00000468384 KCNMA1Q12791 1236 aa8□□□□□ -1.13
HMGB1-207ENST00000468384 AMIGO3Q86WK7 504 aa8□□□□□ -1.13
HMGB1-207ENST00000468384 EPG5Q9HCE0 2579 aa7.99□□□□□ -1.13
HMGB1-207ENST00000468384 CRIPAKQ8N1N5 446 aa7.99□□□□□ -1.13
HMGB1-207ENST00000468384 ZDHHC16Q969W1 377 aa7.99□□□□□ -1.13
HMGB1-207ENST00000468384 ZIC5Q96T25 663 aa7.99□□□□□ -1.13
HMGB1-207ENST00000468384 WDR17Q8IZU2 1322 aa7.99□□□□□ -1.13
HMGB1-207ENST00000468384 PHF14O94880 888 aa7.98□□□□□ -1.13
HMGB1-207ENST00000468384 FMR1Q06787 632 aaKnown RBP eCLIP7.98□□□□□ -1.137e-15■■■■□ 21.6
HMGB1-207ENST00000468384 CST9Q5W186 159 aa7.98□□□□□ -1.13
HMGB1-207ENST00000468384 FBXO46Q6PJ61 603 aaPredicted RBP7.98□□□□□ -1.13
HMGB1-207ENST00000468384 CARD10Q9BWT7 1032 aa7.98□□□□□ -1.13
HMGB1-207ENST00000468384 CCDC87Q9NVE4 849 aa7.98□□□□□ -1.13
HMGB1-207ENST00000468384 ABCC6O95255 1503 aa7.98□□□□□ -1.13
HMGB1-207ENST00000468384 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.97□□□□□ -1.13
HMGB1-207ENST00000468384 A0A1W2PPC1 479 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 EN2P19622 333 aaPredicted RBP7.97□□□□□ -1.13
HMGB1-207ENST00000468384 PPP4CP60510 307 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 FOXK1P85037 733 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 FOXK2Q01167 660 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 NBPF1Q3BBV0 1214 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 ZNF697Q5TEC3 545 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 HCN4Q9Y3Q4 1203 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 PRUNE2Q8WUY3 3088 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 LY75O60449 1722 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 IFT172Q9UG01 1749 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 NCOR1O75376 2440 aa7.97□□□□□ -1.13
HMGB1-207ENST00000468384 ANKARQ7Z5J8 1434 aa7.96□□□□□ -1.13
HMGB1-207ENST00000468384 ZDBF2Q9HCK1 2354 aa7.96□□□□□ -1.13
HMGB1-207ENST00000468384 ITSN1Q15811 1721 aa7.96□□□□□ -1.14
HMGB1-207ENST00000468384 TRPA1O75762 1119 aa7.96□□□□□ -1.14
HMGB1-207ENST00000468384 NOGQ13253 232 aa7.96□□□□□ -1.14
HMGB1-207ENST00000468384 SAPCD2Q86UD0 394 aa7.96□□□□□ -1.14
HMGB1-207ENST00000468384 NGDNQ8NEJ9 315 aaKnown RBP7.96□□□□□ -1.14
HMGB1-207ENST00000468384 RNF186Q9NXI6 227 aa7.96□□□□□ -1.14
HMGB1-207ENST00000468384 SLIT3O75094 1523 aa7.96□□□□□ -1.14
HMGB1-207ENST00000468384 ZBTB7CA1YPR0 619 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 NFKBIEO00221 500 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 VGFO15240 615 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-207ENST00000468384 UBTFP17480 764 aaKnown RBP7.95□□□□□ -1.14
HMGB1-207ENST00000468384 GGCXP38435 758 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 KCTD2Q14681 263 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 ERFEQ4G0M1 354 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 INTS3Q68E01 1043 aaKnown RBP7.95□□□□□ -1.14
HMGB1-207ENST00000468384 SYTL4Q96C24 671 aaPredicted RBP7.95□□□□□ -1.14
HMGB1-207ENST00000468384 HHIPL1Q96JK4 782 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 HDAC9Q9UKV0 1011 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 EYSQ5T1H1 3165 aa7.95□□□□□ -1.14
HMGB1-207ENST00000468384 GCP02774 474 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 PRIM1P49642 420 aaKnown RBP7.94□□□□□ -1.14
HMGB1-207ENST00000468384 MRE11P49959 708 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 DSG2Q14126 1118 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 TMEM151AQ8N4L1 468 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 AK7Q96M32 723 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 RPTORQ8N122 1335 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 ABCC11Q96J66 1382 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 ADAMTSL1Q8N6G6 1762 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 HTTP42858 3142 aa7.94□□□□□ -1.14
HMGB1-207ENST00000468384 AXIN1O15169 862 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 HMGB2P26583 209 aaKnown RBP7.93□□□□□ -1.14
HMGB1-207ENST00000468384 CHRNA5P30532 468 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 EPHX2P34913 555 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 PNMA8AQ86V59 439 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-207ENST00000468384 HS6ST3Q8IZP7 471 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 OXER1Q8TDS5 423 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 RNF25Q96BH1 459 aaPredicted RBP7.93□□□□□ -1.14
HMGB1-207ENST00000468384 KRTAP4-12Q9BQ66 201 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 PPIP5K1Q6PFW1 1433 aa7.93□□□□□ -1.14
HMGB1-207ENST00000468384 KRT37O76014 449 aa7.92□□□□□ -1.14
HMGB1-207ENST00000468384 HACL1Q9UJ83 578 aa7.92□□□□□ -1.14
HMGB1-207ENST00000468384 NSD2O96028 1365 aa7.92□□□□□ -1.14
HMGB1-207ENST00000468384 E9PCH4 1651 aa7.92□□□□□ -1.14
HMGB1-207ENST00000468384 CHD6Q8TD26 2715 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 RNF223E7ERA6 249 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 TRAF5O00463 557 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 GDF11O95390 407 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 SSFA2P28290 1259 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 LIAT1Q6ZQX7 453 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 ACEP12821 1306 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 MYOM3Q5VTT5 1437 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 TOGARAM1Q9Y4F4 1720 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 PAPPA2Q9BXP8 1791 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 SCN4AP35499 1836 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 MAST4O15021 2626 aa7.91□□□□□ -1.14
HMGB1-207ENST00000468384 C5P01031 1676 aa7.9□□□□□ -1.14
HMGB1-207ENST00000468384 NSD3Q9BZ95 1437 aa7.9□□□□□ -1.14
HMGB1-207ENST00000468384 CCDC7Q96M83 1385 aa7.9□□□□□ -1.14
HMGB1-207ENST00000468384 CSB-PGBD3P0DP91 1061 aa7.9□□□□□ -1.14
HMGB1-207ENST00000468384 SYNE4Q8N205 404 aa7.9□□□□□ -1.14
HMGB1-207ENST00000468384 TMUB1Q9BVT8 246 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms