RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 NMRK2Q9NPI5 230 aa13.2□□□□□ -0.3
SF3A3-204ENST00000462258 DBF4Q9UBU7 674 aaPredicted RBP13.2□□□□□ -0.3
SF3A3-204ENST00000462258 RNF123Q5XPI4 1314 aa13.19□□□□□ -0.3
SF3A3-204ENST00000462258 CCDC27Q2M243 656 aa13.19□□□□□ -0.3
SF3A3-204ENST00000462258 CCDC93Q567U6 631 aa13.19□□□□□ -0.3
SF3A3-204ENST00000462258 WDR90Q96KV7 1748 aa13.19□□□□□ -0.3
SF3A3-204ENST00000462258 RPGRQ92834 1020 aaKnown RBP13.18□□□□□ -0.3
SF3A3-204ENST00000462258 UTP14AQ9BVJ6 771 aaKnown RBP13.18□□□□□ -0.3
SF3A3-204ENST00000462258 SNED1Q8TER0 1413 aa13.18□□□□□ -0.3
SF3A3-204ENST00000462258 ALDH1B1P30837 517 aa13.17□□□□□ -0.3
SF3A3-204ENST00000462258 NLRP10Q86W26 655 aa13.17□□□□□ -0.3
SF3A3-204ENST00000462258 PLBD2Q8NHP8 589 aa13.17□□□□□ -0.3
SF3A3-204ENST00000462258 TSR2Q969E8 191 aaKnown RBP13.17□□□□□ -0.3
SF3A3-204ENST00000462258 HYPKQ9NX55 129 aa13.17□□□□□ -0.3
SF3A3-204ENST00000462258 LRRC37AA6NMS7 1700 aa13.16□□□□□ -0.3
SF3A3-204ENST00000462258 ELL2O00472 640 aaPredicted RBP13.16□□□□□ -0.3
SF3A3-204ENST00000462258 TCIRG1Q13488 830 aa13.16□□□□□ -0.3
SF3A3-204ENST00000462258 WWC1Q8IX03 1113 aa13.16□□□□□ -0.3
SF3A3-204ENST00000462258 C8orf58Q8NAV2 365 aa13.16□□□□□ -0.3
SF3A3-204ENST00000462258 C7orf43Q8WVR3 580 aa13.16□□□□□ -0.3
SF3A3-204ENST00000462258 HOXA10P31260 410 aaPredicted RBP13.15□□□□□ -0.3
SF3A3-204ENST00000462258 FKBP4Q02790 459 aaKnown RBP eCLIP13.15□□□□□ -0.3
SF3A3-204ENST00000462258 NCBP3Q53F19 620 aaKnown RBP13.15□□□□□ -0.3
SF3A3-204ENST00000462258 OLFM4Q6UX06 510 aa13.15□□□□□ -0.3
SF3A3-204ENST00000462258 C3orf67Q6ZVT6 689 aa13.15□□□□□ -0.3
SF3A3-204ENST00000462258 IL16Q14005 1332 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 SH3TC1Q8TE82 1336 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 TAF1P21675 1872 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 GLTPD2A6NH11 291 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 TOMM70O94826 608 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 GOLGA2Q08379 1002 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 ANKRD13DQ6ZTN6 518 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 C16orf71Q8IYS4 520 aaPredicted RBP13.14□□□□□ -0.31
SF3A3-204ENST00000462258 RTKN2Q8IZC4 609 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 RBM17Q96I25 401 aaKnown RBP13.14□□□□□ -0.31
SF3A3-204ENST00000462258 NLRP3Q96P20 1036 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 TRMT112Q9UI30 125 aaKnown RBP13.14□□□□□ -0.31
SF3A3-204ENST00000462258 CACNA1FO60840 1977 aa13.14□□□□□ -0.31
SF3A3-204ENST00000462258 ABCC4O15439 1325 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 FANCIQ9NVI1 1328 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 PPEF1O14829 653 aaPredicted RBP13.13□□□□□ -0.31
SF3A3-204ENST00000462258 CCDC30Q5VVM6 783 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 TSPYL6Q8N831 410 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 CRAMP1Q96RY5 1269 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 ISCA1Q9BUE6 129 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 CHMP4AQ9BY43 222 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 PHAXQ9H814 394 aaKnown RBP13.13□□□□□ -0.31
SF3A3-204ENST00000462258 RRAGCQ9HB90 399 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 SCN4AP35499 1836 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 CEP350Q5VT06 3117 aa13.13□□□□□ -0.31
SF3A3-204ENST00000462258 ATP5J2-PTCD1G3V325 749 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 HCLS1P14317 486 aaPredicted RBP13.12□□□□□ -0.31
SF3A3-204ENST00000462258 HSPA6P17066 643 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 SLC10A5Q5PT55 438 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 RIC3Q7Z5B4 369 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 FAM9BQ8IZU0 186 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 RBM46Q8TBY0 533 aaKnown RBP13.12□□□□□ -0.31
SF3A3-204ENST00000462258 ZNF428Q96B54 188 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 ZNF277Q9NRM2 450 aaPredicted RBP13.12□□□□□ -0.31
SF3A3-204ENST00000462258 SALL2Q9Y467 1007 aaPredicted RBP13.12□□□□□ -0.31
SF3A3-204ENST00000462258 COL4A5P29400 1685 aa13.12□□□□□ -0.31
SF3A3-204ENST00000462258 MYH3P11055 1940 aa13.11□□□□□ -0.31
SF3A3-204ENST00000462258 TWISTNBQ3B726 338 aaPredicted RBP13.11□□□□□ -0.31
SF3A3-204ENST00000462258 CC2D2BQ6DHV5 1058 aa13.11□□□□□ -0.31
SF3A3-204ENST00000462258 SLC51AQ86UW1 340 aa13.11□□□□□ -0.31
SF3A3-204ENST00000462258 SYNE4Q8N205 404 aa13.11□□□□□ -0.31
SF3A3-204ENST00000462258 PSMD1Q99460 953 aa13.11□□□□□ -0.31
SF3A3-204ENST00000462258 COL4A1P02462 1669 aa13.11□□□□□ -0.31
SF3A3-204ENST00000462258 DDX58O95786 925 aaKnown RBP13.1□□□□□ -0.31
SF3A3-204ENST00000462258 IARSP41252 1262 aaKnown RBP13.1□□□□□ -0.31
SF3A3-204ENST00000462258 DPY19L2Q6NUT2 758 aa13.1□□□□□ -0.31
SF3A3-204ENST00000462258 MYD88Q99836 296 aa13.1□□□□□ -0.31
SF3A3-204ENST00000462258 STK31Q9BXU1 1019 aa13.1□□□□□ -0.31
SF3A3-204ENST00000462258 DUOX1Q9NRD9 1551 aa13.1□□□□□ -0.31
SF3A3-204ENST00000462258 TCERG1O14776 1098 aaKnown RBP13.09□□□□□ -0.31
SF3A3-204ENST00000462258 VEGFAP15692 232 aaPredicted RBP13.09□□□□□ -0.31
SF3A3-204ENST00000462258 LTBP1Q14766 1721 aa13.09□□□□□ -0.31
SF3A3-204ENST00000462258 GRIPAP1Q4V328 841 aa13.09□□□□□ -0.31
SF3A3-204ENST00000462258 WDR63Q8IWG1 891 aa13.09□□□□□ -0.31
SF3A3-204ENST00000462258 FAM89AQ96GI7 184 aa13.09□□□□□ -0.31
SF3A3-204ENST00000462258 ZNF541Q9H0D2 1346 aa13.09□□□□□ -0.31
SF3A3-204ENST00000462258 SPEF2Q9C093 1822 aa13.09□□□□□ -0.31
SF3A3-204ENST00000462258 TRIM28Q13263 835 aaKnown RBP13.08□□□□□ -0.32
SF3A3-204ENST00000462258 RTL5Q5HYW3 569 aaPredicted RBP13.08□□□□□ -0.32
SF3A3-204ENST00000462258 DDX46Q7L014 1031 aaKnown RBP13.08□□□□□ -0.32
SF3A3-204ENST00000462258 TMX4Q9H1E5 349 aaPredicted RBP13.08□□□□□ -0.32
SF3A3-204ENST00000462258 ATP6V0A2Q9Y487 856 aa13.08□□□□□ -0.32
SF3A3-204ENST00000462258 DDNO94850 711 aaPredicted RBP13.07□□□□□ -0.32
SF3A3-204ENST00000462258 FSTL1Q12841 308 aa13.07□□□□□ -0.32
SF3A3-204ENST00000462258 GRAPQ13588 217 aa13.07□□□□□ -0.32
SF3A3-204ENST00000462258 SMC1BQ8NDV3 1235 aa13.07□□□□□ -0.32
SF3A3-204ENST00000462258 GRAPLQ8TC17 118 aaPredicted RBP13.07□□□□□ -0.32
SF3A3-204ENST00000462258 METTL22Q9BUU2 404 aaPredicted RBP13.07□□□□□ -0.32
SF3A3-204ENST00000462258 MAP3K2Q9Y2U5 619 aa13.07□□□□□ -0.32
SF3A3-204ENST00000462258 ADAMTSL1Q8N6G6 1762 aa13.07□□□□□ -0.32
SF3A3-204ENST00000462258 POTECB2RU33 542 aa13.06□□□□□ -0.32
SF3A3-204ENST00000462258 IRS4O14654 1257 aaPredicted RBP13.06□□□□□ -0.32
SF3A3-204ENST00000462258 ZBTB38Q8NAP3 1195 aaPredicted RBP13.06□□□□□ -0.32
SF3A3-204ENST00000462258 CCDC191Q8NCU4 936 aa13.06□□□□□ -0.32
SF3A3-204ENST00000462258 JDP2Q8WYK2 163 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms