RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 NGLY1Q96IV0 654 aa16.52■□□□□ 0.23
CLK3-203ENST00000454830 C8orf37Q96NL8 207 aa16.52■□□□□ 0.23
CLK3-203ENST00000454830 LARP6Q9BRS8 491 aaKnown RBP16.52■□□□□ 0.23
CLK3-203ENST00000454830 MRC1P22897 1456 aa16.52■□□□□ 0.23
CLK3-203ENST00000454830 DBNDD2Q9BQY9 259 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 COPRSQ9NQ92 184 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 TNNI3KQ59H18 835 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 FPGT-TNNI3KV9GXZ4 949 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 PKD1L3Q7Z443 1732 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 SSFA2P28290 1259 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 ZBTB1Q9Y2K1 713 aa16.51■□□□□ 0.23
CLK3-203ENST00000454830 PLEKHG2Q9H7P9 1386 aa16.5■□□□□ 0.23
CLK3-203ENST00000454830 TCIRG1Q13488 830 aa16.5■□□□□ 0.23
CLK3-203ENST00000454830 ZGPATQ8N5A5 531 aaKnown RBP16.5■□□□□ 0.23
CLK3-203ENST00000454830 FAM227BQ96M60 508 aa16.5■□□□□ 0.23
CLK3-203ENST00000454830 H7C1W4 665 aa16.5■□□□□ 0.23
CLK3-203ENST00000454830 TIMM10P62072 90 aa16.5■□□□□ 0.23
CLK3-203ENST00000454830 PRPF40BQ6NWY9 871 aaKnown RBP16.5■□□□□ 0.23
CLK3-203ENST00000454830 ADAMTS7Q9UKP4 1686 aa16.5■□□□□ 0.23
CLK3-203ENST00000454830 NMIQ13287 307 aaPredicted RBP16.49■□□□□ 0.23
CLK3-203ENST00000454830 DBNLQ9UJU6 430 aaKnown RBP16.49■□□□□ 0.23
CLK3-203ENST00000454830 CIZ1Q9ULV3 898 aaPredicted RBP16.49■□□□□ 0.23
CLK3-203ENST00000454830 ROBO1Q9Y6N7 1651 aa16.49■□□□□ 0.23
CLK3-203ENST00000454830 SYNE4Q8N205 404 aa16.49■□□□□ 0.23
CLK3-203ENST00000454830 GOLGA6L22H0YM25 854 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 ATP6V1AP38606 617 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 HLFQ16534 295 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 LRRC24Q50LG9 513 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 DDX46Q7L014 1031 aaKnown RBP16.48■□□□□ 0.23
CLK3-203ENST00000454830 TRMT112Q9UI30 125 aaKnown RBP16.48■□□□□ 0.23
CLK3-203ENST00000454830 FAM98CQ17RN3 349 aaKnown RBP16.48■□□□□ 0.23
CLK3-203ENST00000454830 FOXO4P98177 505 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 TMX3Q96JJ7 454 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 CEP126Q9P2H0 1117 aa16.48■□□□□ 0.23
CLK3-203ENST00000454830 CPA1P15085 419 aa16.47■□□□□ 0.23
CLK3-203ENST00000454830 RFX5P48382 616 aaPredicted RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 RABL6Q3YEC7 729 aaPredicted RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 DZIP3Q86Y13 1208 aaKnown RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 NCLP19338 710 aaKnown RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 PTH1RQ03431 593 aa16.47■□□□□ 0.23
CLK3-203ENST00000454830 FOXD4L6Q3SYB3 417 aaPredicted RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 FOXD4L3Q6VB84 417 aaPredicted RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 PUS3Q9BZE2 481 aaKnown RBP16.47■□□□□ 0.23
CLK3-203ENST00000454830 RAD50Q92878 1312 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 NHSL1Q5SYE7 1610 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 DDX11L8A8MPP1 907 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 HIP1O00291 1037 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 ZKSCAN1P17029 563 aaPredicted RBP16.46■□□□□ 0.23
CLK3-203ENST00000454830 CASTP20810 708 aaKnown RBP16.46■□□□□ 0.23
CLK3-203ENST00000454830 JAKMIP1Q96N16 626 aaKnown RBP16.46■□□□□ 0.23
CLK3-203ENST00000454830 TRAK2O60296 914 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 CASP7P55210 303 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 ANAPC15P60006 121 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 VSIG10Q8N0Z9 540 aa16.46■□□□□ 0.23
CLK3-203ENST00000454830 HSPA4P34932 840 aa16.46■□□□□ 0.22
CLK3-203ENST00000454830 IFIT5Q13325 482 aaKnown RBP16.46■□□□□ 0.22
CLK3-203ENST00000454830 SLC4A9Q96Q91 983 aa16.46■□□□□ 0.22
CLK3-203ENST00000454830 LSG1Q9H089 658 aaKnown RBP16.46■□□□□ 0.22
CLK3-203ENST00000454830 N4BP2Q86UW6 1770 aaPredicted RBP16.45■□□□□ 0.22
CLK3-203ENST00000454830 USP42Q9H9J4 1324 aaKnown RBP16.45■□□□□ 0.22
CLK3-203ENST00000454830 MAP3K15Q6ZN16 1313 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 EYA2O00167 538 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 GOLIM4O00461 696 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 CYP19A1P11511 503 aaPredicted RBP16.45■□□□□ 0.22
CLK3-203ENST00000454830 TPRNQ4KMQ1 711 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 RASEFQ8IZ41 740 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 SPATA31A1Q5TZJ5 1347 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 A0A0D9SFI3 127 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 IL15P40933 162 aaPredicted RBP16.45■□□□□ 0.22
CLK3-203ENST00000454830 SNX14Q9Y5W7 946 aa16.45■□□□□ 0.22
CLK3-203ENST00000454830 MCM2P49736 904 aa16.44■□□□□ 0.22
CLK3-203ENST00000454830 NUCB2P80303 420 aa16.44■□□□□ 0.22
CLK3-203ENST00000454830 FKBP4Q02790 459 aaKnown RBP eCLIP16.44■□□□□ 0.22
CLK3-203ENST00000454830 RAB3GAP1Q15042 981 aa16.44■□□□□ 0.22
CLK3-203ENST00000454830 CDCA7Q9BWT1 371 aaPredicted RBP16.44■□□□□ 0.22
CLK3-203ENST00000454830 SNRKQ9NRH2 765 aa16.44■□□□□ 0.22
CLK3-203ENST00000454830 CNNM1Q9NRU3 951 aa16.44■□□□□ 0.22
CLK3-203ENST00000454830 GIGYF2Q6Y7W6 1299 aaKnown RBP16.44■□□□□ 0.22
CLK3-203ENST00000454830 ABCA3Q99758 1704 aa16.44■□□□□ 0.22
CLK3-203ENST00000454830 PKP1Q13835 747 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 ISCA1Q9BUE6 129 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 RBM8AQ9Y5S9 174 aaKnown RBP16.43■□□□□ 0.22
CLK3-203ENST00000454830 KCPQ6ZWJ8 1503 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 MCTP1Q6DN14 999 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 MARCH10Q8NA82 808 aaPredicted RBP16.43■□□□□ 0.22
CLK3-203ENST00000454830 DTNBO60941 627 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 KCNQ4P56696 695 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 HSP90AB3PQ58FF7 597 aa16.43■□□□□ 0.22
CLK3-203ENST00000454830 AFDNP55196 1824 aaKnown RBP16.43■□□□□ 0.22
CLK3-203ENST00000454830 A0A1B0GUL7 405 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 IRS4O14654 1257 aaPredicted RBP16.42■□□□□ 0.22
CLK3-203ENST00000454830 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
CLK3-203ENST00000454830 LDHAL6AQ6ZMR3 332 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 CCDC171Q6TFL3 1326 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 KCNQ2O43526 872 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 CHGBP05060 677 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 ATP5JP18859 108 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 METTL24Q5JXM2 366 aa16.42■□□□□ 0.22
CLK3-203ENST00000454830 CCDC129Q6ZRS4 1044 aa16.41■□□□□ 0.22
CLK3-203ENST00000454830 ZBTB38Q8NAP3 1195 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms