RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 RIC1Q4ADV7 1423 aa30.46■■■□□ 2.47
VARS-217ENST00000440048 TCERG1O14776 1098 aaKnown RBP30.45■■■□□ 2.47
VARS-217ENST00000440048 EXOSC9Q06265 439 aaKnown RBP30.44■■■□□ 2.46
VARS-217ENST00000440048 PRPF40BQ6NWY9 871 aaKnown RBP30.44■■■□□ 2.46
VARS-217ENST00000440048 MYH16Q9H6N6 1097 aa30.44■■■□□ 2.46
VARS-217ENST00000440048 SBF1O95248 1867 aa30.44■■■□□ 2.46
VARS-217ENST00000440048 C21orf2O43822 256 aa30.43■■■□□ 2.46
VARS-217ENST00000440048 RIC3Q7Z5B4 369 aa30.43■■■□□ 2.46
VARS-217ENST00000440048 ISCA1Q9BUE6 129 aa30.43■■■□□ 2.46
VARS-217ENST00000440048 STK31Q9BXU1 1019 aa30.43■■■□□ 2.46
VARS-217ENST00000440048 GPBP1L1Q9HC44 474 aaPredicted RBP30.43■■■□□ 2.46
VARS-217ENST00000440048 ZNF219Q9P2Y4 722 aaPredicted RBP30.43■■■□□ 2.46
VARS-217ENST00000440048 C1QTNF8P60827 252 aa30.42■■■□□ 2.46
VARS-217ENST00000440048 CRY2Q49AN0 593 aa30.42■■■□□ 2.46
VARS-217ENST00000440048 RNF123Q5XPI4 1314 aa30.42■■■□□ 2.46
VARS-217ENST00000440048 ATP5J2-PTCD1G3V325 749 aa30.41■■■□□ 2.46
VARS-217ENST00000440048 VAMP4O75379 141 aa30.41■■■□□ 2.46
VARS-217ENST00000440048 SLC10A5Q5PT55 438 aa30.41■■■□□ 2.46
VARS-217ENST00000440048 RASSF7Q02833 373 aa30.4■■■□□ 2.46
VARS-217ENST00000440048 C9orf131Q5VYM1 1079 aa30.4■■■□□ 2.46
VARS-217ENST00000440048 MIER1Q8N108 512 aa30.4■■■□□ 2.46
VARS-217ENST00000440048 TRMT112Q9UI30 125 aaKnown RBP30.4■■■□□ 2.46
VARS-217ENST00000440048 ZNF428Q96B54 188 aa30.39■■■□□ 2.46
VARS-217ENST00000440048 CACNA1FO60840 1977 aa30.39■■■□□ 2.46
VARS-217ENST00000440048 FER1L6Q2WGJ9 1857 aa30.38■■■□□ 2.45
VARS-217ENST00000440048 DDX58O95786 925 aaKnown RBP30.38■■■□□ 2.45
VARS-217ENST00000440048 C3orf67Q6ZVT6 689 aa30.38■■■□□ 2.45
VARS-217ENST00000440048 SYNE4Q8N205 404 aa30.38■■■□□ 2.45
VARS-217ENST00000440048 NFKBIEO00221 500 aa30.37■■■□□ 2.45
VARS-217ENST00000440048 SLC4A2P04920 1241 aa30.37■■■□□ 2.45
VARS-217ENST00000440048 TRIM28Q13263 835 aaKnown RBP30.37■■■□□ 2.45
VARS-217ENST00000440048 NLRP3Q96P20 1036 aa30.37■■■□□ 2.45
VARS-217ENST00000440048 SH3TC1Q8TE82 1336 aa30.37■■■□□ 2.45
VARS-217ENST00000440048 CCDC88AQ3V6T2 1871 aa30.37■■■□□ 2.45
VARS-217ENST00000440048 ALDH1B1P30837 517 aa30.36■■■□□ 2.45
VARS-217ENST00000440048 G2E3Q7L622 706 aa30.36■■■□□ 2.45
VARS-217ENST00000440048 C7orf43Q8WVR3 580 aa30.36■■■□□ 2.45
VARS-217ENST00000440048 RPGRQ92834 1020 aaKnown RBP30.36■■■□□ 2.45
VARS-217ENST00000440048 RNF181Q9P0P0 153 aa30.36■■■□□ 2.45
VARS-217ENST00000440048 HCLS1P14317 486 aaPredicted RBP30.35■■■□□ 2.45
VARS-217ENST00000440048 HOXA10P31260 410 aaPredicted RBP30.35■■■□□ 2.45
VARS-217ENST00000440048 MYD88Q99836 296 aa30.35■■■□□ 2.45
VARS-217ENST00000440048 LAMB2P55268 1798 aa30.35■■■□□ 2.45
VARS-217ENST00000440048 PRELPP51888 382 aa30.34■■■□□ 2.45
VARS-217ENST00000440048 SOGA3Q5TF21 947 aa30.33■■■□□ 2.45
VARS-217ENST00000440048 KSR2Q6VAB6 950 aa30.33■■■□□ 2.45
VARS-217ENST00000440048 ZNF526Q8TF50 670 aaPredicted RBP30.33■■■□□ 2.45
VARS-217ENST00000440048 METTL22Q9BUU2 404 aaPredicted RBP30.33■■■□□ 2.45
VARS-217ENST00000440048 MAP3K2Q9Y2U5 619 aa30.33■■■□□ 2.45
VARS-217ENST00000440048 PI4KAP2A4QPH2 592 aa30.32■■■□□ 2.44
VARS-217ENST00000440048 LMNB1P20700 586 aa30.32■■■□□ 2.44
VARS-217ENST00000440048 PI4KAP1Q8N8J0 262 aa30.32■■■□□ 2.44
VARS-217ENST00000440048 FAM89AQ96GI7 184 aa30.32■■■□□ 2.44
VARS-217ENST00000440048 RBM17Q96I25 401 aaKnown RBP30.32■■■□□ 2.44
VARS-217ENST00000440048 DDX60Q8IY21 1712 aaKnown RBP30.31■■■□□ 2.44
VARS-217ENST00000440048 CRAMP1Q96RY5 1269 aa30.31■■■□□ 2.44
VARS-217ENST00000440048 E9PSI1 815 aa30.3■■■□□ 2.44
VARS-217ENST00000440048 CCDC93Q567U6 631 aa30.3■■■□□ 2.44
VARS-217ENST00000440048 FLIIQ13045 1269 aa30.29■■■□□ 2.44
VARS-217ENST00000440048 OLFM4Q6UX06 510 aa30.29■■■□□ 2.44
VARS-217ENST00000440048 CCDC191Q8NCU4 936 aa30.29■■■□□ 2.44
VARS-217ENST00000440048 LTBP3Q9NS15 1303 aa30.28■■■□□ 2.44
VARS-217ENST00000440048 SLFN5Q08AF3 891 aa30.28■■■□□ 2.44
VARS-217ENST00000440048 RTL5Q5HYW3 569 aaPredicted RBP30.28■■■□□ 2.44
VARS-217ENST00000440048 TAOK3Q9H2K8 898 aa30.28■■■□□ 2.44
VARS-217ENST00000440048 DICER1Q9UPY3 1922 aaKnown RBP30.26■■■□□ 2.44
VARS-217ENST00000440048 ZBTB38Q8NAP3 1195 aaPredicted RBP30.26■■■□□ 2.43
VARS-217ENST00000440048 CWC25Q9NXE8 425 aaPredicted RBP30.26■■■□□ 2.43
VARS-217ENST00000440048 IGKV5-2P06315 115 aa30.25■■■□□ 2.43
VARS-217ENST00000440048 FKBP5Q13451 457 aaPredicted RBP30.25■■■□□ 2.43
VARS-217ENST00000440048 CDCA7LQ96GN5 454 aa30.25■■■□□ 2.43
VARS-217ENST00000440048 ZC3H4Q9UPT8 1303 aaKnown RBP30.24■■■□□ 2.43
VARS-217ENST00000440048 IRS4O14654 1257 aaPredicted RBP30.24■■■□□ 2.43
VARS-217ENST00000440048 RTKN2Q8IZC4 609 aa30.24■■■□□ 2.43
VARS-217ENST00000440048 TIAM2Q8IVF5 1701 aa30.24■■■□□ 2.43
VARS-217ENST00000440048 ABCC4O15439 1325 aa30.23■■■□□ 2.43
VARS-217ENST00000440048 PPEF1O14829 653 aaPredicted RBP30.23■■■□□ 2.43
VARS-217ENST00000440048 NEXNQ0ZGT2 675 aa30.23■■■□□ 2.43
VARS-217ENST00000440048 TAF1P21675 1872 aa30.23■■■□□ 2.43
VARS-217ENST00000440048 PCCAP05165 728 aaPredicted RBP30.22■■■□□ 2.43
VARS-217ENST00000440048 FKBP4Q02790 459 aaKnown RBP eCLIP30.22■■■□□ 2.43
VARS-217ENST00000440048 SNED1Q8TER0 1413 aa30.22■■■□□ 2.43
VARS-217ENST00000440048 SF3B3Q15393 1217 aaKnown RBP30.21■■■□□ 2.43
VARS-217ENST00000440048 CC2D2BQ6DHV5 1058 aa30.21■■■□□ 2.43
VARS-217ENST00000440048 DDX46Q7L014 1031 aaKnown RBP30.21■■■□□ 2.43
VARS-217ENST00000440048 JARID2Q92833 1246 aaPredicted RBP30.21■■■□□ 2.43
VARS-217ENST00000440048 SLC51AQ86UW1 340 aa30.2■■■□□ 2.43
VARS-217ENST00000440048 DNAAF4Q8WXU2 420 aa30.2■■■□□ 2.43
VARS-217ENST00000440048 KDM2BQ8NHM5 1336 aa30.2■■■□□ 2.42
VARS-217ENST00000440048 NEURL1BA8MQ27 555 aa30.19■■■□□ 2.42
VARS-217ENST00000440048 KIF3CO14782 793 aa30.19■■■□□ 2.42
VARS-217ENST00000440048 CWF19L2Q2TBE0 894 aaKnown RBP30.19■■■□□ 2.42
VARS-217ENST00000440048 TRMT2AQ8IZ69 625 aaKnown RBP30.19■■■□□ 2.42
VARS-217ENST00000440048 BBOX1O75936 387 aa30.17■■■□□ 2.42
VARS-217ENST00000440048 HSP90B1P14625 803 aaKnown RBP30.17■■■□□ 2.42
VARS-217ENST00000440048 GRAPQ13588 217 aa30.17■■■□□ 2.42
VARS-217ENST00000440048 GRAPLQ8TC17 118 aaPredicted RBP30.17■■■□□ 2.42
VARS-217ENST00000440048 ZNF277Q9NRM2 450 aaPredicted RBP30.17■■■□□ 2.42
VARS-217ENST00000440048 ATP6V0A2Q9Y487 856 aa30.17■■■□□ 2.42
VARS-217ENST00000440048 PSMD1Q99460 953 aa30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms