RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 COL4A5P29400 1685 aa22.4■■□□□ 1.18
CPSF4-203ENST00000430038 HOXA10P31260 410 aaPredicted RBP22.4■■□□□ 1.18
CPSF4-203ENST00000430038 FKBP4Q02790 459 aaKnown RBP eCLIP22.4■■□□□ 1.18
CPSF4-203ENST00000430038 AIMP1Q12904 312 aaKnown RBP22.4■■□□□ 1.18
CPSF4-203ENST00000430038 SOGA3Q5TF21 947 aa22.4■■□□□ 1.18
CPSF4-203ENST00000430038 DPY19L2Q6NUT2 758 aa22.4■■□□□ 1.18
CPSF4-203ENST00000430038 XAGE3Q8WTP9 111 aa22.4■■□□□ 1.18
CPSF4-203ENST00000430038 TAF1P21675 1872 aa22.4■■□□□ 1.18
CPSF4-203ENST00000430038 PCNTO95613 3336 aa22.4■■□□□ 1.18
CPSF4-203ENST00000430038 IBTKQ9P2D0 1353 aaPredicted RBP22.39■■□□□ 1.18
CPSF4-203ENST00000430038 ALDH1B1P30837 517 aa22.39■■□□□ 1.17
CPSF4-203ENST00000430038 SMC1BQ8NDV3 1235 aa22.39■■□□□ 1.17
CPSF4-203ENST00000430038 ZNF428Q96B54 188 aa22.39■■□□□ 1.17
CPSF4-203ENST00000430038 RIC1Q4ADV7 1423 aa22.39■■□□□ 1.17
CPSF4-203ENST00000430038 ZNF541Q9H0D2 1346 aa22.37■■□□□ 1.17
CPSF4-203ENST00000430038 DDX21Q9NR30 783 aaKnown RBP eCLIP22.37■■□□□ 1.17
CPSF4-203ENST00000430038 CHPF2Q9P2E5 772 aa22.37■■□□□ 1.17
CPSF4-203ENST00000430038 APAF1O14727 1248 aa22.36■■□□□ 1.17
CPSF4-203ENST00000430038 ZNF853P0CG23 659 aa22.36■■□□□ 1.17
CPSF4-203ENST00000430038 SLC10A5Q5PT55 438 aa22.36■■□□□ 1.17
CPSF4-203ENST00000430038 TCERG1O14776 1098 aaKnown RBP22.35■■□□□ 1.17
CPSF4-203ENST00000430038 NLRP10Q86W26 655 aa22.35■■□□□ 1.17
CPSF4-203ENST00000430038 RTKN2Q8IZC4 609 aa22.35■■□□□ 1.17
CPSF4-203ENST00000430038 MBIPQ9NS73 344 aa22.35■■□□□ 1.17
CPSF4-203ENST00000430038 PARP10Q53GL7 1025 aa22.34■■□□□ 1.17
CPSF4-203ENST00000430038 PPP1R42Q7Z4L9 355 aa22.34■■□□□ 1.17
CPSF4-203ENST00000430038 CFAP44Q96MT7 982 aa22.34■■□□□ 1.17
CPSF4-203ENST00000430038 UTP14AQ9BVJ6 771 aaKnown RBP22.34■■□□□ 1.17
CPSF4-203ENST00000430038 IARSP41252 1262 aaKnown RBP22.33■■□□□ 1.17
CPSF4-203ENST00000430038 TCIRG1Q13488 830 aa22.33■■□□□ 1.17
CPSF4-203ENST00000430038 RPGRQ92834 1020 aaKnown RBP22.33■■□□□ 1.17
CPSF4-203ENST00000430038 CRAMP1Q96RY5 1269 aa22.33■■□□□ 1.17
CPSF4-203ENST00000430038 SCN4AP35499 1836 aa22.33■■□□□ 1.16
CPSF4-203ENST00000430038 FZD9O00144 591 aa22.32■■□□□ 1.16
CPSF4-203ENST00000430038 HCLS1P14317 486 aaPredicted RBP22.32■■□□□ 1.16
CPSF4-203ENST00000430038 KLRG1Q96E93 195 aa22.32■■□□□ 1.16
CPSF4-203ENST00000430038 L3MBTL3Q96JM7 780 aaPredicted RBP22.32■■□□□ 1.16
CPSF4-203ENST00000430038 PSMD1Q99460 953 aa22.32■■□□□ 1.16
CPSF4-203ENST00000430038 HDGFL1Q5TGJ6 251 aa22.31■■□□□ 1.16
CPSF4-203ENST00000430038 DUSP27Q5VZP5 1158 aa22.31■■□□□ 1.16
CPSF4-203ENST00000430038 RBM17Q96I25 401 aaKnown RBP22.31■■□□□ 1.16
CPSF4-203ENST00000430038 DDX60Q8IY21 1712 aaKnown RBP22.31■■□□□ 1.16
CPSF4-203ENST00000430038 NLRP3Q96P20 1036 aa22.3■■□□□ 1.16
CPSF4-203ENST00000430038 COL4A1P02462 1669 aa22.3■■□□□ 1.16
CPSF4-203ENST00000430038 PPEF1O14829 653 aaPredicted RBP22.29■■□□□ 1.16
CPSF4-203ENST00000430038 TAF1DQ9H5J8 278 aaPredicted RBP22.29■■□□□ 1.16
CPSF4-203ENST00000430038 ABCC4O15439 1325 aa22.29■■□□□ 1.16
CPSF4-203ENST00000430038 LTBP1Q14766 1721 aa22.28■■□□□ 1.16
CPSF4-203ENST00000430038 ELL2O00472 640 aaPredicted RBP22.28■■□□□ 1.16
CPSF4-203ENST00000430038 JMYQ8N9B5 988 aa22.28■■□□□ 1.16
CPSF4-203ENST00000430038 ADAMTSL1Q8N6G6 1762 aa22.27■■□□□ 1.16
CPSF4-203ENST00000430038 HOXB7P09629 217 aa22.27■■□□□ 1.16
CPSF4-203ENST00000430038 CHADLQ6NUI6 762 aa22.27■■□□□ 1.16
CPSF4-203ENST00000430038 PLBD2Q8NHP8 589 aa22.27■■□□□ 1.16
CPSF4-203ENST00000430038 ISCA1Q9BUE6 129 aa22.27■■□□□ 1.16
CPSF4-203ENST00000430038 TRMT112Q9UI30 125 aaKnown RBP22.27■■□□□ 1.16
CPSF4-203ENST00000430038 ATP5J2-PTCD1G3V325 749 aa22.26■■□□□ 1.15
CPSF4-203ENST00000430038 HSP90AB3PQ58FF7 597 aa22.26■■□□□ 1.15
CPSF4-203ENST00000430038 CC2D2BQ6DHV5 1058 aa22.26■■□□□ 1.15
CPSF4-203ENST00000430038 ANKRD13DQ6ZTN6 518 aa22.26■■□□□ 1.15
CPSF4-203ENST00000430038 C8orf58Q8NAV2 365 aa22.26■■□□□ 1.15
CPSF4-203ENST00000430038 PHAXQ9H814 394 aaKnown RBP22.26■■□□□ 1.15
CPSF4-203ENST00000430038 DBF4Q9UBU7 674 aaPredicted RBP22.26■■□□□ 1.15
CPSF4-203ENST00000430038 RNF123Q5XPI4 1314 aa22.26■■□□□ 1.15
CPSF4-203ENST00000430038 IFT57Q9NWB7 429 aa22.25■■□□□ 1.15
CPSF4-203ENST00000430038 ATP6V0A2Q9Y487 856 aa22.25■■□□□ 1.15
CPSF4-203ENST00000430038 FAM89AQ96GI7 184 aa22.24■■□□□ 1.15
CPSF4-203ENST00000430038 TSPYL6Q8N831 410 aa22.23■■□□□ 1.15
CPSF4-203ENST00000430038 SH3TC1Q8TE82 1336 aa22.23■■□□□ 1.15
CPSF4-203ENST00000430038 IQCA1LA6NCM1 817 aa22.22■■□□□ 1.15
CPSF4-203ENST00000430038 ITGBL1O95965 494 aaPredicted RBP22.22■■□□□ 1.15
CPSF4-203ENST00000430038 RTL5Q5HYW3 569 aaPredicted RBP22.22■■□□□ 1.15
CPSF4-203ENST00000430038 GPC2Q8N158 579 aa22.22■■□□□ 1.15
CPSF4-203ENST00000430038 LARGE2Q8N3Y3 721 aa22.22■■□□□ 1.15
CPSF4-203ENST00000430038 HYPKQ9NX55 129 aa22.22■■□□□ 1.15
CPSF4-203ENST00000430038 HACL1Q9UJ83 578 aa22.22■■□□□ 1.15
CPSF4-203ENST00000430038 PASKQ96RG2 1323 aa22.22■■□□□ 1.15
CPSF4-203ENST00000430038 EPHX2P34913 555 aa22.21■■□□□ 1.15
CPSF4-203ENST00000430038 GNAI1P63096 354 aa22.21■■□□□ 1.15
CPSF4-203ENST00000430038 AOC3Q16853 763 aa22.21■■□□□ 1.15
CPSF4-203ENST00000430038 EAPPQ56P03 285 aaPredicted RBP22.21■■□□□ 1.15
CPSF4-203ENST00000430038 IFFO2Q5TF58 517 aa22.21■■□□□ 1.15
CPSF4-203ENST00000430038 JDP2Q8WYK2 163 aa22.21■■□□□ 1.15
CPSF4-203ENST00000430038 LDHDQ86WU2 507 aa22.2■■□□□ 1.14
CPSF4-203ENST00000430038 SP8Q8IXZ3 490 aa22.2■■□□□ 1.14
CPSF4-203ENST00000430038 RTFDC1Q9BY42 306 aaPredicted RBP22.2■■□□□ 1.14
CPSF4-203ENST00000430038 GJA3Q9Y6H8 435 aa22.2■■□□□ 1.14
CPSF4-203ENST00000430038 DUOX1Q9NRD9 1551 aa22.2■■□□□ 1.14
CPSF4-203ENST00000430038 BBOX1O75936 387 aa22.19■■□□□ 1.14
CPSF4-203ENST00000430038 EPS15P42566 896 aa22.19■■□□□ 1.14
CPSF4-203ENST00000430038 SCNN1DP51172 638 aa22.19■■□□□ 1.14
CPSF4-203ENST00000430038 LRRC37AA6NMS7 1700 aa22.18■■□□□ 1.14
CPSF4-203ENST00000430038 TRIM28Q13263 835 aaKnown RBP22.18■■□□□ 1.14
CPSF4-203ENST00000430038 GRAPQ13588 217 aa22.18■■□□□ 1.14
CPSF4-203ENST00000430038 GRIPAP1Q4V328 841 aa22.18■■□□□ 1.14
CPSF4-203ENST00000430038 GRAPLQ8TC17 118 aaPredicted RBP22.18■■□□□ 1.14
CPSF4-203ENST00000430038 CELF1Q92879 486 aaKnown RBP22.18■■□□□ 1.14
CPSF4-203ENST00000430038 TSR2Q969E8 191 aaKnown RBP22.18■■□□□ 1.14
CPSF4-203ENST00000430038 PPIP5K2O43314 1243 aa22.17■■□□□ 1.14
CPSF4-203ENST00000430038 EIF6P56537 245 aaKnown RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms