RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 IRF7Q92985 503 aa4.72□□□□□ -1.65
VPS41-206ENST00000418457 MARK1Q9P0L2 795 aa4.72□□□□□ -1.65
VPS41-206ENST00000418457 PCSK2P16519 638 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 FGFR3P22607 806 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 KCNQ4P56696 695 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 ARHGAP4P98171 946 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 DNM1Q05193 864 aaKnown RBP4.71□□□□□ -1.66
VPS41-206ENST00000418457 SFSWAPQ12872 951 aaKnown RBP4.71□□□□□ -1.66
VPS41-206ENST00000418457 NFX1Q12986 1120 aaKnown RBP4.71□□□□□ -1.66
VPS41-206ENST00000418457 ECM1Q16610 540 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 ATCAYQ86WG3 371 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 CMTR1Q8N1G2 835 aaKnown RBP4.71□□□□□ -1.66
VPS41-206ENST00000418457 GPR161Q8N6U8 529 aaKnown RBP4.71□□□□□ -1.66
VPS41-206ENST00000418457 GPR152Q8TDT2 470 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 PIK3R5Q8WYR1 880 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 EDEM1Q92611 657 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 KCNH4Q9UQ05 1017 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 RTCBQ9Y3I0 505 aaKnown RBP4.71□□□□□ -1.66
VPS41-206ENST00000418457 ERBB4Q15303 1308 aa4.71□□□□□ -1.66
VPS41-206ENST00000418457 NDUFB5O43674 189 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 FZD6O60353 706 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 WFS1O76024 890 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 CD33P20138 364 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 MX2P20592 715 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 MZF1P28698 734 aaPredicted RBP4.7□□□□□ -1.66
VPS41-206ENST00000418457 FAM182BQ5T319 152 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 ZNF775Q96BV0 537 aaPredicted RBP4.7□□□□□ -1.66
VPS41-206ENST00000418457 NUDT16Q96DE0 195 aaKnown RBP4.7□□□□□ -1.66
VPS41-206ENST00000418457 COL25A1Q9BXS0 654 aaPredicted RBP4.7□□□□□ -1.66
VPS41-206ENST00000418457 STRN4Q9NRL3 753 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 CCDC87Q9NVE4 849 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 BRPF3Q9ULD4 1205 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 POLIQ9UNA4 740 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 USP20Q9Y2K6 914 aa4.7□□□□□ -1.66
VPS41-206ENST00000418457 PDGFAP04085 211 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 RPLP1P05386 114 aaKnown RBP4.69□□□□□ -1.66
VPS41-206ENST00000418457 GRNP28799 593 aaKnown RBP4.69□□□□□ -1.66
VPS41-206ENST00000418457 USP5P45974 858 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 CTBSQ01459 385 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 GAS6Q14393 721 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 TTC16Q8NEE8 873 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 C11orf16Q9NQ32 467 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 MBIPQ9NS73 344 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 DCTN4Q9UJW0 460 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 HCN2Q9UL51 889 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 NSFL1CQ9UNZ2 370 aaKnown RBP4.69□□□□□ -1.66
VPS41-206ENST00000418457 FNDC3AQ9Y2H6 1198 aaKnown RBP4.69□□□□□ -1.66
VPS41-206ENST00000418457 KCNMB2Q9Y691 235 aa4.69□□□□□ -1.66
VPS41-206ENST00000418457 UBAP1LF5GYI3 381 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 XYLBO75191 536 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 BMP4P12644 408 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 MAPK1P28482 360 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 SPEM2Q0P670 501 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 CCINQ13939 588 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 CCDC27Q2M243 656 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 TMCO4Q5TGY1 634 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 PNMA5Q96PV4 448 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 SLC30A3Q99726 388 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 PRR12Q9ULL5 1215 aa4.68□□□□□ -1.66
VPS41-206ENST00000418457 EGFRP00533 1210 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 MAP2K3P46734 347 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 MARSP56192 900 aaKnown RBP4.67□□□□□ -1.66
VPS41-206ENST00000418457 EHHADHQ08426 723 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 PDE3BQ13370 1112 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 NEUROD1Q13562 356 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 GRIN2CQ14957 1233 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 TRIP4Q15650 581 aaPredicted RBP4.67□□□□□ -1.66
VPS41-206ENST00000418457 C8orf34Q49A92 452 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 RNFT1Q5M7Z0 435 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 TREML4Q6UXN2 200 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 GJD3Q8N144 294 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 CNTNAP3BQ96NU0 1288 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 CITED4Q96RK1 184 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 RBCK1Q9BYM8 510 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 CNTNAP3Q9BZ76 1288 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 GSX2Q9BZM3 304 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 EFCC1Q9HA90 598 aa4.67□□□□□ -1.66
VPS41-206ENST00000418457 IGF1RP08069 1367 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 A6NHS1 94 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 C2CD2LO14523 706 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 GMPRP36959 345 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 KRT76Q01546 638 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 SRSF11Q05519 484 aaKnown RBP4.66□□□□□ -1.66
VPS41-206ENST00000418457 PDE12Q6L8Q7 609 aaKnown RBP4.66□□□□□ -1.66
VPS41-206ENST00000418457 KRT25Q7Z3Z0 450 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 RAB44Q7Z6P3 723 aaPredicted RBP4.66□□□□□ -1.66
VPS41-206ENST00000418457 NLRP13Q86W25 1043 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 ZSCAN29Q8IWY8 852 aaPredicted RBP4.66□□□□□ -1.66
VPS41-206ENST00000418457 TMC1Q8TDI8 760 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 BHMTQ93088 406 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 GGNBP2Q9H3C7 697 aa4.66□□□□□ -1.66
VPS41-206ENST00000418457 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.66□□□□□ -1.66
VPS41-206ENST00000418457 SASH3O75995 380 aa4.65□□□□□ -1.67
VPS41-206ENST00000418457 RARAP10276 462 aa4.65□□□□□ -1.67
VPS41-206ENST00000418457 ARAFP10398 606 aa4.65□□□□□ -1.67
VPS41-206ENST00000418457 NFKB1P19838 968 aa4.65□□□□□ -1.67
VPS41-206ENST00000418457 TARSP26639 723 aaKnown RBP4.65□□□□□ -1.67
VPS41-206ENST00000418457 LCE2CQ5TA81 110 aa4.65□□□□□ -1.67
VPS41-206ENST00000418457 ZNF468Q5VIY5 522 aaPredicted RBP4.65□□□□□ -1.67
VPS41-206ENST00000418457 XKR5Q6UX68 686 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms