RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TOB2Q14106 344 aaPredicted RBP11.86□□□□□ -0.51
SS18-203ENST00000415083 CCDC183Q5T5S1 534 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 CREB3L3Q68CJ9 461 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 RBM8AQ9Y5S9 174 aaKnown RBP11.86□□□□□ -0.51
SS18-203ENST00000415083 MYH15Q9Y2K3 1946 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 COL18A1P39060 1754 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 ADGRL3Q9HAR2 1447 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 CDC37L1Q7L3B6 337 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 KCNF1Q9H3M0 494 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 PDRG1Q9NUG6 133 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 CCDC39Q9UFE4 941 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 NDUFB9Q9Y6M9 179 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 ARFGEF2Q9Y6D5 1785 aa11.86□□□□□ -0.51
SS18-203ENST00000415083 ALS2Q96Q42 1657 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 SLC27A2O14975 620 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 GCP02774 474 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 UBE2HP62256 183 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 AACSQ86V21 672 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 TM6SF1Q9BZW5 370 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 TTC12Q9H892 705 aaPredicted RBP11.85□□□□□ -0.51
SS18-203ENST00000415083 ALDH1L1O75891 902 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 TTC6Q86TZ1 520 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 LMTK3Q96Q04 1460 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 SLC39A6Q13433 755 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 ESCO1Q5FWF5 840 aa11.85□□□□□ -0.51
SS18-203ENST00000415083 ADCY5O95622 1261 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 TSC1Q92574 1164 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 UQCRHLA0A096LP55 91 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 GRM8O00222 908 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 UQCRHP07919 91 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 MCM5P33992 734 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 RFX5P48382 616 aaPredicted RBP11.84□□□□□ -0.51
SS18-203ENST00000415083 TEFQ10587 303 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 ANKRD24Q8TF21 1146 aa11.84□□□□□ -0.51
SS18-203ENST00000415083 LIG1P18858 919 aa11.83□□□□□ -0.51
SS18-203ENST00000415083 PIP4K2AP48426 406 aaPredicted RBP11.83□□□□□ -0.51
SS18-203ENST00000415083 CLASRPQ8N2M8 674 aaKnown RBP11.83□□□□□ -0.51
SS18-203ENST00000415083 DIAPH3Q9NSV4 1193 aa11.83□□□□□ -0.51
SS18-203ENST00000415083 SMC3Q9UQE7 1217 aa11.83□□□□□ -0.51
SS18-203ENST00000415083 EVI5LQ96CN4 794 aa11.83□□□□□ -0.52
SS18-203ENST00000415083 SIL1Q9H173 461 aa11.83□□□□□ -0.52
SS18-203ENST00000415083 AIMP1Q12904 312 aaKnown RBP11.83□□□□□ -0.52
SS18-203ENST00000415083 SLFNL1Q499Z3 407 aa11.83□□□□□ -0.52
SS18-203ENST00000415083 BOLA2Q9H3K6 86 aa11.83□□□□□ -0.52
SS18-203ENST00000415083 C9orf78Q9NZ63 289 aaPredicted RBP11.83□□□□□ -0.52
SS18-203ENST00000415083 TJP1Q07157 1748 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 PLEKHO1Q53GL0 409 aaPredicted RBP11.82□□□□□ -0.52
SS18-203ENST00000415083 FAM13BQ9NYF5 915 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 MEGF6O75095 1541 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 KDM4AO75164 1064 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 ZNF710Q8N1W2 664 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 LINS1Q8NG48 757 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.82□□□□□ -0.52
SS18-203ENST00000415083 ZNF609O15014 1411 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 ADAMTSL3P82987 1691 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 A0A0G2JLW4 131 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 NEURL1BA8MQ27 555 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 PSME1Q06323 249 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 OS9Q13438 667 aaPredicted RBP11.82□□□□□ -0.52
SS18-203ENST00000415083 UVSSAQ2YD98 709 aa11.82□□□□□ -0.52
SS18-203ENST00000415083 HSP90AB4PQ58FF6 505 aa11.81□□□□□ -0.52
SS18-203ENST00000415083 FERMT3Q86UX7 667 aa11.81□□□□□ -0.52
SS18-203ENST00000415083 DDX21Q9NR30 783 aaKnown RBP eCLIP11.81□□□□□ -0.52
SS18-203ENST00000415083 PYCARDQ9ULZ3 195 aa11.81□□□□□ -0.52
SS18-203ENST00000415083 SEC62Q99442 399 aaKnown RBP11.81□□□□□ -0.52
SS18-203ENST00000415083 PDCL3Q9H2J4 239 aa11.81□□□□□ -0.52
SS18-203ENST00000415083 DBNLQ9UJU6 430 aaKnown RBP11.81□□□□□ -0.52
SS18-203ENST00000415083 CYP46A1Q9Y6A2 500 aa11.81□□□□□ -0.52
SS18-203ENST00000415083 TAF5LO75529 589 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 IFIT2P09913 472 aaKnown RBP11.8□□□□□ -0.52
SS18-203ENST00000415083 PIBF1Q8WXW3 757 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 LARP1Q6PKG0 1096 aaKnown RBP11.8□□□□□ -0.52
SS18-203ENST00000415083 CCDC129Q6ZRS4 1044 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 KCNH5Q8NCM2 988 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 SYAP1Q96A49 352 aaPredicted RBP11.8□□□□□ -0.52
SS18-203ENST00000415083 SPTLC3Q9NUV7 552 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 NUP188Q5SRE5 1749 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 JAK2O60674 1132 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 AMOTQ4VCS5 1084 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 USPL1Q5W0Q7 1092 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 PGBD1Q96JS3 809 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 MRVI1Q9Y6F6 885 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 NWD2Q9ULI1 1742 aa11.8□□□□□ -0.52
SS18-203ENST00000415083 RPS6KB1P23443 525 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 CASP7P55210 303 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 PTPN12Q05209 780 aaKnown RBP11.79□□□□□ -0.52
SS18-203ENST00000415083 GCKRQ14397 625 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 USP16Q9Y5T5 823 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 VPS37CA5D8V6 355 aaPredicted RBP11.79□□□□□ -0.52
SS18-203ENST00000415083 FAM177BA6PVY3 158 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 MYL6BP14649 208 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 STOX1Q6ZVD7 989 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 ERBB3P21860 1342 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 TSGA10IPQ3SY00 556 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 ZNF790Q6PG37 636 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 XAGE3Q8WTP9 111 aa11.79□□□□□ -0.52
SS18-203ENST00000415083 ALDH8A1Q9H2A2 487 aaPredicted RBP11.79□□□□□ -0.52
SS18-203ENST00000415083 SH2B1Q9NRF2 756 aaPredicted RBP11.79□□□□□ -0.52
SS18-203ENST00000415083 PKD1L3Q7Z443 1732 aa11.78□□□□□ -0.52
SS18-203ENST00000415083 NOLC1Q14978 699 aaKnown RBP eCLIP11.78□□□□□ -0.521e-6■■■■□ 21.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms