RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 LMNB1P20700 586 aa14.45□□□□□ -0.1
RFFL-204ENST00000414419 RASSF7Q02833 373 aa14.45□□□□□ -0.1
RFFL-204ENST00000414419 GOLGA2Q08379 1002 aa14.45□□□□□ -0.1
RFFL-204ENST00000414419 FER1L6Q2WGJ9 1857 aa14.44□□□□□ -0.1
RFFL-204ENST00000414419 RIC3Q7Z5B4 369 aa14.44□□□□□ -0.1
RFFL-204ENST00000414419 NLRP3Q96P20 1036 aa14.44□□□□□ -0.1
RFFL-204ENST00000414419 STK31Q9BXU1 1019 aa14.44□□□□□ -0.1
RFFL-204ENST00000414419 TRMT112Q9UI30 125 aaKnown RBP14.44□□□□□ -0.1
RFFL-204ENST00000414419 ABCC12Q96J65 1359 aa14.44□□□□□ -0.1
RFFL-204ENST00000414419 CACNA1FO60840 1977 aa14.43□□□□□ -0.1
RFFL-204ENST00000414419 RNF123Q5XPI4 1314 aa14.43□□□□□ -0.1
RFFL-204ENST00000414419 TWISTNBQ3B726 338 aaPredicted RBP14.43□□□□□ -0.1
RFFL-204ENST00000414419 NLRP10Q86W26 655 aa14.43□□□□□ -0.1
RFFL-204ENST00000414419 TSPYL6Q8N831 410 aa14.43□□□□□ -0.1
RFFL-204ENST00000414419 RBM17Q96I25 401 aaKnown RBP14.43□□□□□ -0.1
RFFL-204ENST00000414419 DICER1Q9UPY3 1922 aaKnown RBP14.43□□□□□ -0.1
RFFL-204ENST00000414419 TNRC6CQ9HCJ0 1690 aaKnown RBP14.42□□□□□ -0.1
RFFL-204ENST00000414419 RIC1Q4ADV7 1423 aa14.42□□□□□ -0.1
RFFL-204ENST00000414419 DDX58O95786 925 aaKnown RBP14.42□□□□□ -0.1
RFFL-204ENST00000414419 CRY2Q49AN0 593 aa14.42□□□□□ -0.1
RFFL-204ENST00000414419 CCDC93Q567U6 631 aa14.42□□□□□ -0.1
RFFL-204ENST00000414419 TAOK3Q9H2K8 898 aa14.42□□□□□ -0.1
RFFL-204ENST00000414419 PHAXQ9H814 394 aaKnown RBP14.42□□□□□ -0.1
RFFL-204ENST00000414419 KDM2BQ8NHM5 1336 aa14.41□□□□□ -0.1
RFFL-204ENST00000414419 SH3TC1Q8TE82 1336 aa14.41□□□□□ -0.1
RFFL-204ENST00000414419 NFKBIEO00221 500 aa14.41□□□□□ -0.1
RFFL-204ENST00000414419 C1QTNF8P60827 252 aa14.41□□□□□ -0.1
RFFL-204ENST00000414419 SLC10A5Q5PT55 438 aa14.41□□□□□ -0.1
RFFL-204ENST00000414419 FANCIQ9NVI1 1328 aa14.41□□□□□ -0.1
RFFL-204ENST00000414419 ZC3H4Q9UPT8 1303 aaKnown RBP14.41□□□□□ -0.1
RFFL-204ENST00000414419 ATP5J2-PTCD1G3V325 749 aa14.4□□□□□ -0.1
RFFL-204ENST00000414419 RTKN2Q8IZC4 609 aa14.4□□□□□ -0.1
RFFL-204ENST00000414419 TMX4Q9H1E5 349 aaPredicted RBP14.4□□□□□ -0.1
RFFL-204ENST00000414419 MYH16Q9H6N6 1097 aa14.4□□□□□ -0.1
RFFL-204ENST00000414419 LTBP3Q9NS15 1303 aa14.4□□□□□ -0.1
RFFL-204ENST00000414419 TIAM2Q8IVF5 1701 aa14.39□□□□□ -0.11
RFFL-204ENST00000414419 TCERG1O14776 1098 aaKnown RBP14.39□□□□□ -0.11
RFFL-204ENST00000414419 HCLS1P14317 486 aaPredicted RBP14.39□□□□□ -0.11
RFFL-204ENST00000414419 HOXA10P31260 410 aaPredicted RBP14.39□□□□□ -0.11
RFFL-204ENST00000414419 C7orf43Q8WVR3 580 aa14.39□□□□□ -0.11
RFFL-204ENST00000414419 ZNF428Q96B54 188 aa14.39□□□□□ -0.11
RFFL-204ENST00000414419 CRAMP1Q96RY5 1269 aa14.39□□□□□ -0.11
RFFL-204ENST00000414419 ISCA1Q9BUE6 129 aa14.39□□□□□ -0.11
RFFL-204ENST00000414419 LAMB2P55268 1798 aa14.39□□□□□ -0.11
RFFL-204ENST00000414419 SLC4A2P04920 1241 aa14.38□□□□□ -0.11
RFFL-204ENST00000414419 EXOSC9Q06265 439 aaKnown RBP14.38□□□□□ -0.11
RFFL-204ENST00000414419 CC2D2BQ6DHV5 1058 aa14.38□□□□□ -0.11
RFFL-204ENST00000414419 MYD88Q99836 296 aa14.38□□□□□ -0.11
RFFL-204ENST00000414419 CCER2I3L3R5 266 aa14.37□□□□□ -0.11
RFFL-204ENST00000414419 HSP90B1P14625 803 aaKnown RBP14.37□□□□□ -0.11
RFFL-204ENST00000414419 PRELPP51888 382 aa14.37□□□□□ -0.11
RFFL-204ENST00000414419 FKBP4Q02790 459 aaKnown RBP eCLIP14.37□□□□□ -0.11
RFFL-204ENST00000414419 TRIM28Q13263 835 aaKnown RBP14.37□□□□□ -0.11
RFFL-204ENST00000414419 DPY19L2Q6NUT2 758 aa14.37□□□□□ -0.11
RFFL-204ENST00000414419 C3orf67Q6ZVT6 689 aa14.37□□□□□ -0.11
RFFL-204ENST00000414419 DDX46Q7L014 1031 aaKnown RBP14.37□□□□□ -0.11
RFFL-204ENST00000414419 C16orf71Q8IYS4 520 aaPredicted RBP14.37□□□□□ -0.11
RFFL-204ENST00000414419 SYNE4Q8N205 404 aa14.37□□□□□ -0.11
RFFL-204ENST00000414419 FAM89AQ96GI7 184 aa14.37□□□□□ -0.11
RFFL-204ENST00000414419 GLTPD2A6NH11 291 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 PPEF1O14829 653 aaPredicted RBP14.36□□□□□ -0.11
RFFL-204ENST00000414419 NEXNQ0ZGT2 675 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 GRIPAP1Q4V328 841 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 RTL5Q5HYW3 569 aaPredicted RBP14.36□□□□□ -0.11
RFFL-204ENST00000414419 OLFM4Q6UX06 510 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 KSR2Q6VAB6 950 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 CCDC191Q8NCU4 936 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 METTL22Q9BUU2 404 aaPredicted RBP14.36□□□□□ -0.11
RFFL-204ENST00000414419 NMRK2Q9NPI5 230 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 MAP3K2Q9Y2U5 619 aa14.36□□□□□ -0.11
RFFL-204ENST00000414419 PI4KAP2A4QPH2 592 aa14.35□□□□□ -0.11
RFFL-204ENST00000414419 KIF3CO14782 793 aa14.35□□□□□ -0.11
RFFL-204ENST00000414419 VAMP4O75379 141 aa14.35□□□□□ -0.11
RFFL-204ENST00000414419 PI4KAP1Q8N8J0 262 aa14.35□□□□□ -0.11
RFFL-204ENST00000414419 RRAGCQ9HB90 399 aa14.35□□□□□ -0.11
RFFL-204ENST00000414419 CWC25Q9NXE8 425 aaPredicted RBP14.35□□□□□ -0.11
RFFL-204ENST00000414419 ABCC4O15439 1325 aa14.35□□□□□ -0.11
RFFL-204ENST00000414419 DDX60Q8IY21 1712 aaKnown RBP14.35□□□□□ -0.11
RFFL-204ENST00000414419 TAF1P21675 1872 aa14.34□□□□□ -0.11
RFFL-204ENST00000414419 IRS4O14654 1257 aaPredicted RBP14.34□□□□□ -0.11
RFFL-204ENST00000414419 BBOX1O75936 387 aa14.34□□□□□ -0.11
RFFL-204ENST00000414419 ZBTB38Q8NAP3 1195 aaPredicted RBP14.34□□□□□ -0.11
RFFL-204ENST00000414419 SPINK5Q9NQ38 1064 aaPredicted RBP14.34□□□□□ -0.11
RFFL-204ENST00000414419 ZNF277Q9NRM2 450 aaPredicted RBP14.34□□□□□ -0.11
RFFL-204ENST00000414419 TOMM70O94826 608 aa14.33□□□□□ -0.12
RFFL-204ENST00000414419 IARSP41252 1262 aaKnown RBP14.33□□□□□ -0.12
RFFL-204ENST00000414419 FLIIQ13045 1269 aa14.33□□□□□ -0.12
RFFL-204ENST00000414419 FKBP5Q13451 457 aaPredicted RBP14.33□□□□□ -0.12
RFFL-204ENST00000414419 G2E3Q7L622 706 aa14.33□□□□□ -0.12
RFFL-204ENST00000414419 PSMD1Q99460 953 aa14.33□□□□□ -0.12
RFFL-204ENST00000414419 PCCAP05165 728 aaPredicted RBP14.32□□□□□ -0.12
RFFL-204ENST00000414419 GRAPQ13588 217 aa14.32□□□□□ -0.12
RFFL-204ENST00000414419 DIEXFQ68CQ4 756 aaKnown RBP14.32□□□□□ -0.12
RFFL-204ENST00000414419 GRAPLQ8TC17 118 aaPredicted RBP14.32□□□□□ -0.12
RFFL-204ENST00000414419 JDP2Q8WYK2 163 aa14.32□□□□□ -0.12
RFFL-204ENST00000414419 ATP6V0A2Q9Y487 856 aa14.32□□□□□ -0.12
RFFL-204ENST00000414419 VEGFAP15692 232 aaPredicted RBP14.31□□□□□ -0.12
RFFL-204ENST00000414419 SF3B3Q15393 1217 aaKnown RBP14.31□□□□□ -0.12
RFFL-204ENST00000414419 TMC4Q7Z404 712 aa14.31□□□□□ -0.12
RFFL-204ENST00000414419 SP8Q8IXZ3 490 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms