RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 TJP1Q07157 1748 aa20.3■□□□□ 0.84
NUP50-202ENST00000396096 TOGARAM1Q9Y4F4 1720 aa20.29■□□□□ 0.84
NUP50-202ENST00000396096 PTPN12Q05209 780 aaKnown RBP20.28■□□□□ 0.84
NUP50-202ENST00000396096 CCDC8Q9H0W5 538 aaPredicted RBP20.28■□□□□ 0.84
NUP50-202ENST00000396096 UBE3BQ7Z3V4 1068 aa20.28■□□□□ 0.84
NUP50-202ENST00000396096 RASEFQ8IZ41 740 aa20.28■□□□□ 0.84
NUP50-202ENST00000396096 SIL1Q9H173 461 aa20.28■□□□□ 0.84
NUP50-202ENST00000396096 LMBRD1Q9NUN5 540 aa20.28■□□□□ 0.84
NUP50-202ENST00000396096 A0A087WZG4 1122 aa20.27■□□□□ 0.84
NUP50-202ENST00000396096 H7C1W4 665 aa20.27■□□□□ 0.84
NUP50-202ENST00000396096 BRD1O95696 1058 aa20.27■□□□□ 0.84
NUP50-202ENST00000396096 MCTP1Q6DN14 999 aa20.27■□□□□ 0.84
NUP50-202ENST00000396096 KLHDC4Q8TBB5 520 aa20.27■□□□□ 0.84
NUP50-202ENST00000396096 TLR7Q9NYK1 1049 aaKnown RBP20.27■□□□□ 0.84
NUP50-202ENST00000396096 TM6SF1Q9BZW5 370 aa20.26■□□□□ 0.83
NUP50-202ENST00000396096 ATP5J2-PTCD1G3V325 749 aa20.26■□□□□ 0.83
NUP50-202ENST00000396096 PTCD1O75127 700 aaKnown RBP20.26■□□□□ 0.83
NUP50-202ENST00000396096 PTH1RQ03431 593 aa20.26■□□□□ 0.83
NUP50-202ENST00000396096 CCDC171Q6TFL3 1326 aa20.25■□□□□ 0.83
NUP50-202ENST00000396096 DDX49Q9Y6V7 483 aaKnown RBP20.25■□□□□ 0.83
NUP50-202ENST00000396096 TNNI3KQ59H18 835 aa20.24■□□□□ 0.83
NUP50-202ENST00000396096 GRPEL1Q9HAV7 217 aa20.24■□□□□ 0.83
NUP50-202ENST00000396096 FPGT-TNNI3KV9GXZ4 949 aa20.24■□□□□ 0.83
NUP50-202ENST00000396096 RFX7Q2KHR2 1363 aa20.24■□□□□ 0.83
NUP50-202ENST00000396096 ATP5JP18859 108 aa20.24■□□□□ 0.83
NUP50-202ENST00000396096 NECTIN1Q15223 517 aa20.24■□□□□ 0.83
NUP50-202ENST00000396096 JCADQ9P266 1359 aa20.23■□□□□ 0.83
NUP50-202ENST00000396096 FOXO4P98177 505 aa20.23■□□□□ 0.83
NUP50-202ENST00000396096 NMIQ13287 307 aaPredicted RBP20.23■□□□□ 0.83
NUP50-202ENST00000396096 TTLL7Q6ZT98 887 aa20.23■□□□□ 0.83
NUP50-202ENST00000396096 JARID2Q92833 1246 aaPredicted RBP20.23■□□□□ 0.83
NUP50-202ENST00000396096 CWC25Q9NXE8 425 aaPredicted RBP20.23■□□□□ 0.83
NUP50-202ENST00000396096 MED23Q9ULK4 1368 aa20.23■□□□□ 0.83
NUP50-202ENST00000396096 EVA1CP58658 441 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 MAP4K1Q92918 833 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 BOLA2Q9H3K6 86 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 LIMCH1Q9UPQ0 1083 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 AK2P54819 239 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 TFCP2Q12800 502 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 NOL8Q76FK4 1167 aaKnown RBP20.22■□□□□ 0.83
NUP50-202ENST00000396096 CCDC191Q8NCU4 936 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 DDX54Q8TDD1 881 aaKnown RBP20.22■□□□□ 0.83
NUP50-202ENST00000396096 ZSWIM6Q9HCJ5 1215 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 STRN4Q9NRL3 753 aa20.22■□□□□ 0.83
NUP50-202ENST00000396096 DBNLQ9UJU6 430 aaKnown RBP20.22■□□□□ 0.83
NUP50-202ENST00000396096 A1BGP04217 495 aa20.21■□□□□ 0.83
NUP50-202ENST00000396096 VPS53Q5VIR6 699 aa20.21■□□□□ 0.83
NUP50-202ENST00000396096 FAM227BQ96M60 508 aa20.21■□□□□ 0.83
NUP50-202ENST00000396096 FSD1Q9BTV5 496 aa20.21■□□□□ 0.83
NUP50-202ENST00000396096 LMBR1LQ6UX01 489 aa20.2■□□□□ 0.82
NUP50-202ENST00000396096 RUFY3Q7L099 469 aa20.2■□□□□ 0.82
NUP50-202ENST00000396096 GAS2L3Q86XJ1 694 aa20.2■□□□□ 0.82
NUP50-202ENST00000396096 COL14A1Q05707 1796 aaKnown RBP20.2■□□□□ 0.82
NUP50-202ENST00000396096 CASTP20810 708 aaKnown RBP20.2■□□□□ 0.82
NUP50-202ENST00000396096 PRPF40BQ6NWY9 871 aaKnown RBP20.2■□□□□ 0.82
NUP50-202ENST00000396096 RBM8AQ9Y5S9 174 aaKnown RBP20.2■□□□□ 0.82
NUP50-202ENST00000396096 RPAP1Q9BWH6 1393 aaPredicted RBP20.19■□□□□ 0.82
NUP50-202ENST00000396096 ZNF445P59923 1031 aa20.19■□□□□ 0.82
NUP50-202ENST00000396096 GPR108Q9NPR9 543 aa20.19■□□□□ 0.82
NUP50-202ENST00000396096 A0A0D9SFI3 127 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 ZKSCAN1P17029 563 aaPredicted RBP20.18■□□□□ 0.82
NUP50-202ENST00000396096 CREB3L3Q68CJ9 461 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 VSIG10Q8N0Z9 540 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 TMOD3Q9NYL9 352 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 PLCH1Q4KWH8 1693 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 ITGB4P16144 1822 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 WDR33Q9C0J8 1336 aaKnown RBP20.18■□□□□ 0.82
NUP50-202ENST00000396096 PRPF40AO75400 957 aaKnown RBP20.18■□□□□ 0.82
NUP50-202ENST00000396096 ADCK5Q3MIX3 580 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 ZSCAN31Q96LW9 406 aaPredicted RBP20.18■□□□□ 0.82
NUP50-202ENST00000396096 JAKMIP1Q96N16 626 aaKnown RBP20.18■□□□□ 0.82
NUP50-202ENST00000396096 TEX13AQ9BXU3 409 aaPredicted RBP20.18■□□□□ 0.82
NUP50-202ENST00000396096 PANK2Q9BZ23 570 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 ATG3Q9NT62 314 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 CYP46A1Q9Y6A2 500 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 DISP2A7MBM2 1401 aa20.18■□□□□ 0.82
NUP50-202ENST00000396096 LRP6O75581 1613 aa20.17■□□□□ 0.82
NUP50-202ENST00000396096 TICAM2Q86XR7 235 aa20.17■□□□□ 0.82
NUP50-202ENST00000396096 ISCA1Q9BUE6 129 aa20.17■□□□□ 0.82
NUP50-202ENST00000396096 PDRG1Q9NUG6 133 aa20.17■□□□□ 0.82
NUP50-202ENST00000396096 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.17■□□□□ 0.82
NUP50-202ENST00000396096 ATG9AQ7Z3C6 839 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 FAM43AQ8N2R8 423 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 ARXQ96QS3 562 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 HAUS7Q99871 368 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 SH2B1Q9NRF2 756 aaPredicted RBP20.16■□□□□ 0.82
NUP50-202ENST00000396096 COL22A1Q8NFW1 1626 aaPredicted RBP20.16■□□□□ 0.82
NUP50-202ENST00000396096 SLC27A2O14975 620 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 TRIM28Q13263 835 aaKnown RBP20.16■□□□□ 0.82
NUP50-202ENST00000396096 TSGA10IPQ3SY00 556 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 GPT2Q8TD30 523 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 DBNDD2Q9BQY9 259 aa20.16■□□□□ 0.82
NUP50-202ENST00000396096 PSMA5P28066 241 aa20.15■□□□□ 0.82
NUP50-202ENST00000396096 RNF20Q5VTR2 975 aa20.15■□□□□ 0.82
NUP50-202ENST00000396096 ALDH8A1Q9H2A2 487 aaPredicted RBP20.15■□□□□ 0.82
NUP50-202ENST00000396096 ZBTB3Q9H5J0 574 aa20.15■□□□□ 0.82
NUP50-202ENST00000396096 HMG20BQ9P0W2 317 aa20.15■□□□□ 0.82
NUP50-202ENST00000396096 CIAO1O76071 339 aa20.14■□□□□ 0.81
NUP50-202ENST00000396096 MBD3O95983 291 aa20.14■□□□□ 0.81
NUP50-202ENST00000396096 IL15P40933 162 aaPredicted RBP20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms