RNA–Protein interactions for RNA: ENST00000395060.5

CLIP2-203, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP2, Length 3,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-203ENST00000395060 USP6P35125 1406 aa17■□□□□ 0.31
CLIP2-203ENST00000395060 AACSQ86V21 672 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 BOLA2Q9H3K6 86 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 ZBTB22O15209 634 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 CHGBP05060 677 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 CCDC144BQ3MJ40 725 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 CCDC144CPQ8IYA2 1237 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 KLHDC4Q8TBB5 520 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 CLIP2Q9UDT6 1046 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 USP27XA6NNY8 438 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 JAK2O60674 1132 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 ZKSCAN1P17029 563 aaPredicted RBP16.99■□□□□ 0.31
CLIP2-203ENST00000395060 FTOQ9C0B1 505 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLIP2-203ENST00000395060 TBX22Q9Y458 520 aa16.99■□□□□ 0.31
CLIP2-203ENST00000395060 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.98■□□□□ 0.31
CLIP2-203ENST00000395060 ZNF165P49910 485 aa16.98■□□□□ 0.31
CLIP2-203ENST00000395060 CLASRPQ8N2M8 674 aaKnown RBP16.98■□□□□ 0.31
CLIP2-203ENST00000395060 CACTINQ8WUQ7 758 aaKnown RBP16.98■□□□□ 0.31
CLIP2-203ENST00000395060 SSH2Q76I76 1423 aa16.98■□□□□ 0.31
CLIP2-203ENST00000395060 AIMP1Q12904 312 aaKnown RBP16.97■□□□□ 0.31
CLIP2-203ENST00000395060 CWF19L2Q2TBE0 894 aaKnown RBP16.97■□□□□ 0.31
CLIP2-203ENST00000395060 ZSCAN25Q6NSZ9 544 aa16.97■□□□□ 0.31
CLIP2-203ENST00000395060 C9orf78Q9NZ63 289 aaPredicted RBP16.97■□□□□ 0.31
CLIP2-203ENST00000395060 UBR1Q8IWV7 1749 aa16.97■□□□□ 0.31
CLIP2-203ENST00000395060 NMIQ13287 307 aaPredicted RBP16.97■□□□□ 0.31
CLIP2-203ENST00000395060 CREB3L3Q68CJ9 461 aa16.97■□□□□ 0.31
CLIP2-203ENST00000395060 CCDC112Q8NEF3 446 aa16.97■□□□□ 0.31
CLIP2-203ENST00000395060 HSP90B1P14625 803 aaKnown RBP16.96■□□□□ 0.31
CLIP2-203ENST00000395060 UTP14CQ5TAP6 766 aaKnown RBP16.96■□□□□ 0.31
CLIP2-203ENST00000395060 LMOD2Q6P5Q4 547 aa16.96■□□□□ 0.31
CLIP2-203ENST00000395060 LGR6Q9HBX8 967 aa16.96■□□□□ 0.31
CLIP2-203ENST00000395060 TLR7Q9NYK1 1049 aaKnown RBP16.96■□□□□ 0.31
CLIP2-203ENST00000395060 ERICH4A6NGS2 130 aa16.96■□□□□ 0.31
CLIP2-203ENST00000395060 USP16Q9Y5T5 823 aa16.96■□□□□ 0.31
CLIP2-203ENST00000395060 GLRX3O76003 335 aaKnown RBP16.95■□□□□ 0.3
CLIP2-203ENST00000395060 VPS53Q5VIR6 699 aa16.95■□□□□ 0.3
CLIP2-203ENST00000395060 ZNF75DP51815 510 aa16.95■□□□□ 0.3
CLIP2-203ENST00000395060 RUFY2Q8WXA3 655 aa16.95■□□□□ 0.3
CLIP2-203ENST00000395060 ZBTB9Q96C00 473 aa16.95■□□□□ 0.3
CLIP2-203ENST00000395060 FSD1Q9BTV5 496 aa16.95■□□□□ 0.3
CLIP2-203ENST00000395060 GUCY1B3Q02153 619 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 ANKRD7Q92527 254 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 ST7Q9NRC1 585 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 A0A0D9SFI3 127 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 DNAAF4Q8WXU2 420 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 ZSWIM6Q9HCJ5 1215 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 FGD1P98174 961 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 BLOC1S2Q6QNY1 142 aa16.94■□□□□ 0.3
CLIP2-203ENST00000395060 GTPBP4Q9BZE4 634 aaKnown RBP16.94■□□□□ 0.3
CLIP2-203ENST00000395060 OVOS2A0A0J9YW53 1432 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 OVOS2Q6IE36 1432 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 CCDC171Q6TFL3 1326 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 LEO1Q8WVC0 666 aaPredicted RBP16.93■□□□□ 0.3
CLIP2-203ENST00000395060 ECHDC1Q9NTX5 307 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 PRAMEF22A3QJZ6 481 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 GOLGA6L19H0YKK7 550 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 H3BQV1 296 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 IFFO2Q5TF58 517 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 PGBD1Q96JS3 809 aa16.93■□□□□ 0.3
CLIP2-203ENST00000395060 TRERF1Q96PN7 1200 aa16.92■□□□□ 0.3
CLIP2-203ENST00000395060 SLC27A2O14975 620 aa16.92■□□□□ 0.3
CLIP2-203ENST00000395060 POLA2Q14181 598 aa16.92■□□□□ 0.3
CLIP2-203ENST00000395060 C11orf57Q6ZUT1 292 aaPredicted RBP16.92■□□□□ 0.3
CLIP2-203ENST00000395060 FMNL2Q96PY5 1086 aa16.92■□□□□ 0.3
CLIP2-203ENST00000395060 SH2B1Q9NRF2 756 aaPredicted RBP16.92■□□□□ 0.3
CLIP2-203ENST00000395060 CEP135Q66GS9 1140 aa16.92■□□□□ 0.3
CLIP2-203ENST00000395060 CCDC129Q6ZRS4 1044 aa16.92■□□□□ 0.3
CLIP2-203ENST00000395060 ZNF589Q86UQ0 364 aaPredicted RBP16.92■□□□□ 0.3
CLIP2-203ENST00000395060 ZNF215Q9UL58 517 aaPredicted RBP16.92■□□□□ 0.3
CLIP2-203ENST00000395060 MPRIPQ6WCQ1 1025 aa16.91■□□□□ 0.3
CLIP2-203ENST00000395060 ZSCAN31Q96LW9 406 aaPredicted RBP16.91■□□□□ 0.3
CLIP2-203ENST00000395060 CTIFO43310 598 aaKnown RBP16.91■□□□□ 0.3
CLIP2-203ENST00000395060 TPM3P06753 285 aa16.91■□□□□ 0.3
CLIP2-203ENST00000395060 NECTIN1Q15223 517 aa16.91■□□□□ 0.3
CLIP2-203ENST00000395060 PROSER3Q2NL68 480 aa16.91■□□□□ 0.3
CLIP2-203ENST00000395060 ESCO1Q5FWF5 840 aa16.91■□□□□ 0.3
CLIP2-203ENST00000395060 CEP170BQ9Y4F5 1589 aaPredicted RBP16.9■□□□□ 0.3
CLIP2-203ENST00000395060 BRF1Q92994 677 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 C3P01024 1663 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 BECN2A8MW95 431 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 BEND3Q5T5X7 828 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 GORABQ5T7V8 394 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 CTNNA3Q9UI47 895 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 MAP3K2Q9Y2U5 619 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 TTC21AQ8NDW8 1320 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 ITSN1Q15811 1721 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 ELF2Q15723 593 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 SLFNL1Q499Z3 407 aa16.9■□□□□ 0.3
CLIP2-203ENST00000395060 EAF2Q96CJ1 260 aaPredicted RBP16.9■□□□□ 0.3
CLIP2-203ENST00000395060 AOX1Q06278 1338 aa16.89■□□□□ 0.29
CLIP2-203ENST00000395060 MON2Q7Z3U7 1717 aa16.89■□□□□ 0.29
CLIP2-203ENST00000395060 FLT4P35916 1363 aa16.89■□□□□ 0.29
CLIP2-203ENST00000395060 SMTNL1A8MU46 457 aa16.89■□□□□ 0.29
CLIP2-203ENST00000395060 SKILP12757 684 aa16.89■□□□□ 0.29
CLIP2-203ENST00000395060 HOXC9P31274 260 aa16.89■□□□□ 0.29
CLIP2-203ENST00000395060 GPATCH3Q96I76 525 aa16.88■□□□□ 0.29
CLIP2-203ENST00000395060 SEC62Q99442 399 aaKnown RBP16.88■□□□□ 0.29
CLIP2-203ENST00000395060 CCT2P78371 535 aaKnown RBP16.88■□□□□ 0.29
CLIP2-203ENST00000395060 CLSTN2Q9H4D0 955 aa16.88■□□□□ 0.29
CLIP2-203ENST00000395060 OGFRQ9NZT2 677 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms