RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 GOLGA8AA7E2F4 631 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 PLEKHG1Q9ULL1 1385 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 LMTK3Q96Q04 1460 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 SMARCC1Q92922 1105 aaPredicted RBP19.41■□□□□ 0.7
SCN3B-202ENST00000392770 MAP3K11Q16584 847 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 MNS1Q8NEH6 495 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 SMARCE1Q969G3 411 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 BABAM1Q9NWV8 329 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 TMOD2Q9NZR1 351 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 CCDC196A0A1B0GTZ2 297 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 IL15P40933 162 aaPredicted RBP19.41■□□□□ 0.7
SCN3B-202ENST00000392770 LGR6Q9HBX8 967 aa19.41■□□□□ 0.7
SCN3B-202ENST00000392770 FAM135BQ49AJ0 1406 aa19.4■□□□□ 0.7
SCN3B-202ENST00000392770 ABCC3O15438 1527 aa19.4■□□□□ 0.7
SCN3B-202ENST00000392770 SSRP1Q08945 709 aaKnown RBP19.4■□□□□ 0.7
SCN3B-202ENST00000392770 CHL1O00533 1208 aa19.4■□□□□ 0.7
SCN3B-202ENST00000392770 HMGN5P82970 282 aaKnown RBP19.4■□□□□ 0.7
SCN3B-202ENST00000392770 BICC1Q9H694 974 aaKnown RBP19.4■□□□□ 0.7
SCN3B-202ENST00000392770 IQCA1Q86XH1 822 aa19.4■□□□□ 0.7
SCN3B-202ENST00000392770 CRACR2BQ8N4Y2 399 aaPredicted RBP19.4■□□□□ 0.7
SCN3B-202ENST00000392770 UTP14AQ9BVJ6 771 aaKnown RBP19.4■□□□□ 0.7
SCN3B-202ENST00000392770 ATP2B3Q16720 1220 aa19.39■□□□□ 0.7
SCN3B-202ENST00000392770 ST5P78524 1137 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 CEP57L1Q8IYX8 460 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 ZNF219Q9P2Y4 722 aaPredicted RBP19.39■□□□□ 0.69
SCN3B-202ENST00000392770 SEC63Q9UGP8 760 aaKnown RBP19.39■□□□□ 0.69
SCN3B-202ENST00000392770 NIP7Q9Y221 180 aaKnown RBP eCLIP19.39■□□□□ 0.69
SCN3B-202ENST00000392770 TTLL5Q6EMB2 1281 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 ZNF444Q8N0Y2 327 aaPredicted RBP19.39■□□□□ 0.69
SCN3B-202ENST00000392770 C6orf229H3BNL8 230 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 STIM1Q13586 685 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 SMC5Q8IY18 1101 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 MPNDQ8N594 471 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 ZNF790Q6PG37 636 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 CCDC82Q8N4S0 544 aa19.39■□□□□ 0.69
SCN3B-202ENST00000392770 SCAND2PQ9GZW5 306 aaPredicted RBP19.39■□□□□ 0.69
SCN3B-202ENST00000392770 ANKRD18AQ8IVF6 992 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 PLEKHM2Q8IWE5 1019 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 TTC41PQ6P2S7 1318 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 SLF2Q8IX21 1173 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 CTCFLQ8NI51 663 aaPredicted RBP19.38■□□□□ 0.69
SCN3B-202ENST00000392770 SETDB2Q96T68 719 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 OFD1O75665 1012 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 GPS2Q13227 327 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 ZHX3Q9H4I2 956 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 NCOA7Q8NI08 942 aa19.38■□□□□ 0.69
SCN3B-202ENST00000392770 NMIQ13287 307 aaPredicted RBP19.37■□□□□ 0.69
SCN3B-202ENST00000392770 STX6O43752 255 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 TFCP2Q12800 502 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 CCDC183Q5T5S1 534 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 DDX21Q9NR30 783 aaKnown RBP eCLIP19.37■□□□□ 0.69
SCN3B-202ENST00000392770 NLRP1Q9C000 1473 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 CCDC144CPQ8IYA2 1237 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 TMX3Q96JJ7 454 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 TMEM67Q5HYA8 995 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 RBM8AQ9Y5S9 174 aaKnown RBP19.37■□□□□ 0.69
SCN3B-202ENST00000392770 CLTCL1P53675 1640 aa19.37■□□□□ 0.69
SCN3B-202ENST00000392770 MCMDC2Q4G0Z9 681 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 SLC52A2Q9HAB3 445 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 USP19O94966 1318 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 PLA2R1Q13018 1463 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 CCP110O43303 1012 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 MFSD6Q6ZSS7 791 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 UNC13BO14795 1591 aa19.36■□□□□ 0.69
SCN3B-202ENST00000392770 CATIPQ7Z7H3 387 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 CBFA2T2O43439 604 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 RAB11FIP4Q86YS3 637 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 PAG1Q9NWQ8 432 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 ATP7BP35670 1465 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 ZFYP08048 801 aaPredicted RBP19.35■□□□□ 0.69
SCN3B-202ENST00000392770 USP16Q9Y5T5 823 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 ARAP3Q8WWN8 1544 aa19.35■□□□□ 0.69
SCN3B-202ENST00000392770 SLC4A8Q2Y0W8 1093 aa19.34■□□□□ 0.69
SCN3B-202ENST00000392770 SPTY2D1Q68D10 685 aaPredicted RBP19.34■□□□□ 0.69
SCN3B-202ENST00000392770 ZNF76P36508 570 aa19.34■□□□□ 0.69
SCN3B-202ENST00000392770 IRS4O14654 1257 aaPredicted RBP19.34■□□□□ 0.69
SCN3B-202ENST00000392770 PPFIBP1Q86W92 1011 aa19.33■□□□□ 0.69
SCN3B-202ENST00000392770 GDPD2Q9HCC8 539 aa19.33■□□□□ 0.69
SCN3B-202ENST00000392770 SSBP05455 408 aaKnown RBP eCLIP19.33■□□□□ 0.68
SCN3B-202ENST00000392770 HOXB7P09629 217 aa19.33■□□□□ 0.68
SCN3B-202ENST00000392770 ANAPC15P60006 121 aa19.33■□□□□ 0.68
SCN3B-202ENST00000392770 SMTNL1A8MU46 457 aa19.33■□□□□ 0.68
SCN3B-202ENST00000392770 METAP2P50579 478 aaKnown RBP eCLIP19.33■□□□□ 0.68
SCN3B-202ENST00000392770 NECAB1Q8N987 351 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 IQSEC3Q9UPP2 1182 aaPredicted RBP19.32■□□□□ 0.68
SCN3B-202ENST00000392770 SPHKAPQ2M3C7 1700 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 TMEM132AQ24JP5 1023 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 PLBD2Q8NHP8 589 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 PPFIA3O75145 1194 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 BAG4O95429 457 aaKnown RBP19.32■□□□□ 0.68
SCN3B-202ENST00000392770 CT47A1Q5JQC4 288 aaPredicted RBP19.32■□□□□ 0.68
SCN3B-202ENST00000392770 CDC42BPBQ9Y5S2 1711 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 TRPM1Q7Z4N2 1603 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 CLASP1Q7Z460 1538 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 CAGE1Q8TC20 777 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 METTL22Q9BUU2 404 aaPredicted RBP19.32■□□□□ 0.68
SCN3B-202ENST00000392770 KDM2BQ8NHM5 1336 aa19.32■□□□□ 0.68
SCN3B-202ENST00000392770 BAG3O95817 575 aa19.31■□□□□ 0.68
SCN3B-202ENST00000392770 LDHCP07864 332 aa19.31■□□□□ 0.68
SCN3B-202ENST00000392770 MCM5P33992 734 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms