RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 ATP8B2P98198 1209 aa23.17■■□□□ 1.3
CCDC50-202ENST00000392456 JARID2Q92833 1246 aaPredicted RBP23.17■■□□□ 1.3
CCDC50-202ENST00000392456 R3HCC1Q9Y3T6 440 aaKnown RBP23.17■■□□□ 1.3
CCDC50-202ENST00000392456 C9orf78Q9NZ63 289 aaPredicted RBP23.16■■□□□ 1.3
CCDC50-202ENST00000392456 NEURL1BA8MQ27 555 aa23.16■■□□□ 1.3
CCDC50-202ENST00000392456 CYP19A1P11511 503 aaPredicted RBP23.15■■□□□ 1.3
CCDC50-202ENST00000392456 ZBTB3Q9H5J0 574 aa23.15■■□□□ 1.3
CCDC50-202ENST00000392456 SMARCA5O60264 1052 aaPredicted RBP23.15■■□□□ 1.3
CCDC50-202ENST00000392456 PLBD2Q8NHP8 589 aa23.15■■□□□ 1.3
CCDC50-202ENST00000392456 BECN1Q14457 450 aa23.14■■□□□ 1.29
CCDC50-202ENST00000392456 C16orf71Q8IYS4 520 aaPredicted RBP23.14■■□□□ 1.29
CCDC50-202ENST00000392456 RGS22Q8NE09 1264 aa23.14■■□□□ 1.29
CCDC50-202ENST00000392456 KAZALD1Q96I82 304 aa23.14■■□□□ 1.29
CCDC50-202ENST00000392456 EXOC6BQ9Y2D4 811 aa23.14■■□□□ 1.29
CCDC50-202ENST00000392456 STARD3NLO95772 234 aa23.14■■□□□ 1.29
CCDC50-202ENST00000392456 PPP1R42Q7Z4L9 355 aa23.14■■□□□ 1.29
CCDC50-202ENST00000392456 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.14■■□□□ 1.29
CCDC50-202ENST00000392456 GRM8O00222 908 aa23.13■■□□□ 1.29
CCDC50-202ENST00000392456 TEX13AQ9BXU3 409 aaPredicted RBP23.13■■□□□ 1.29
CCDC50-202ENST00000392456 TRAK2O60296 914 aa23.13■■□□□ 1.29
CCDC50-202ENST00000392456 NEXNQ0ZGT2 675 aa23.13■■□□□ 1.29
CCDC50-202ENST00000392456 GCKRQ14397 625 aa23.13■■□□□ 1.29
CCDC50-202ENST00000392456 ZBTB1Q9Y2K1 713 aa23.13■■□□□ 1.29
CCDC50-202ENST00000392456 QTRT2Q9H974 415 aaKnown RBP23.12■■□□□ 1.29
CCDC50-202ENST00000392456 HMMRO75330 724 aa23.11■■□□□ 1.29
CCDC50-202ENST00000392456 SUCLG2Q96I99 432 aa23.11■■□□□ 1.29
CCDC50-202ENST00000392456 TRPC5Q9UL62 973 aaPredicted RBP23.11■■□□□ 1.29
CCDC50-202ENST00000392456 RNF216Q9NWF9 866 aaPredicted RBP23.11■■□□□ 1.29
CCDC50-202ENST00000392456 ATRNO75882 1429 aa23.11■■□□□ 1.29
CCDC50-202ENST00000392456 CDK11BP21127 795 aaKnown RBP23.1■■□□□ 1.29
CCDC50-202ENST00000392456 KCNQ4P56696 695 aa23.1■■□□□ 1.29
CCDC50-202ENST00000392456 OTUD7AQ8TE49 926 aaPredicted RBP23.1■■□□□ 1.29
CCDC50-202ENST00000392456 LOC102724428A0A0B4J2F2 783 aa23.1■■□□□ 1.29
CCDC50-202ENST00000392456 SIK1P57059 783 aa23.1■■□□□ 1.29
CCDC50-202ENST00000392456 ITPK1Q13572 414 aa23.1■■□□□ 1.29
CCDC50-202ENST00000392456 SRGAP3O43295 1099 aa23.09■■□□□ 1.29
CCDC50-202ENST00000392456 ATP6V1AP38606 617 aa23.09■■□□□ 1.29
CCDC50-202ENST00000392456 SSH3Q8TE77 659 aa23.09■■□□□ 1.29
CCDC50-202ENST00000392456 THSD7AQ9UPZ6 1657 aa23.09■■□□□ 1.29
CCDC50-202ENST00000392456 UTYO14607 1347 aa23.09■■□□□ 1.29
CCDC50-202ENST00000392456 ONECUT3O60422 494 aaPredicted RBP23.08■■□□□ 1.29
CCDC50-202ENST00000392456 IRX3P78415 501 aaPredicted RBP23.08■■□□□ 1.29
CCDC50-202ENST00000392456 SEPT12Q8IYM1 358 aa23.08■■□□□ 1.29
CCDC50-202ENST00000392456 PALLDQ8WX93 1383 aa23.08■■□□□ 1.29
CCDC50-202ENST00000392456 ARFGEF2Q9Y6D5 1785 aa23.08■■□□□ 1.29
CCDC50-202ENST00000392456 ZBTB22O15209 634 aa23.08■■□□□ 1.29
CCDC50-202ENST00000392456 EPHA10Q5JZY3 1008 aa23.08■■□□□ 1.29
CCDC50-202ENST00000392456 POLA2Q14181 598 aa23.07■■□□□ 1.28
CCDC50-202ENST00000392456 DNTTIP2Q5QJE6 756 aaKnown RBP23.07■■□□□ 1.28
CCDC50-202ENST00000392456 SAMD1Q6SPF0 538 aaPredicted RBP23.07■■□□□ 1.28
CCDC50-202ENST00000392456 BICC1Q9H694 974 aaKnown RBP23.07■■□□□ 1.28
CCDC50-202ENST00000392456 PPP1R9BQ96SB3 815 aa23.06■■□□□ 1.28
CCDC50-202ENST00000392456 TJP1Q07157 1748 aa23.06■■□□□ 1.28
CCDC50-202ENST00000392456 MSNP26038 577 aaKnown RBP23.05■■□□□ 1.28
CCDC50-202ENST00000392456 INTS5Q6P9B9 1019 aaKnown RBP23.05■■□□□ 1.28
CCDC50-202ENST00000392456 UBE3BQ7Z3V4 1068 aa23.05■■□□□ 1.28
CCDC50-202ENST00000392456 A0A087WZG4 1122 aa23.05■■□□□ 1.28
CCDC50-202ENST00000392456 SEC24BO95487 1268 aa23.05■■□□□ 1.28
CCDC50-202ENST00000392456 CCDC173Q0VFZ6 552 aa23.05■■□□□ 1.28
CCDC50-202ENST00000392456 HLFQ16534 295 aa23.05■■□□□ 1.28
CCDC50-202ENST00000392456 PLEKHM2Q8IWE5 1019 aa23.04■■□□□ 1.28
CCDC50-202ENST00000392456 CRKLP46109 303 aaKnown RBP23.03■■□□□ 1.28
CCDC50-202ENST00000392456 TBC1D2BQ9UPU7 963 aa23.03■■□□□ 1.28
CCDC50-202ENST00000392456 SURF6O75683 361 aaKnown RBP23.03■■□□□ 1.28
CCDC50-202ENST00000392456 MTX1Q13505 466 aa23.03■■□□□ 1.28
CCDC50-202ENST00000392456 PA2G4Q9UQ80 394 aaKnown RBP23.03■■□□□ 1.28
CCDC50-202ENST00000392456 IBTKQ9P2D0 1353 aaPredicted RBP23.02■■□□□ 1.28
CCDC50-202ENST00000392456 CASP7P55210 303 aa23.02■■□□□ 1.28
CCDC50-202ENST00000392456 NUP188Q5SRE5 1749 aa23.02■■□□□ 1.28
CCDC50-202ENST00000392456 SLC20A2Q08357 652 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 TCIRG1Q13488 830 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 KLHDC4Q8TBB5 520 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 SMARCC1Q92922 1105 aaPredicted RBP23■■□□□ 1.27
CCDC50-202ENST00000392456 MYH14Q7Z406 1995 aaKnown RBP23■■□□□ 1.27
CCDC50-202ENST00000392456 KIF6Q6ZMV9 814 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 SMIM5Q71RC9 77 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 LRRCC1Q9C099 1032 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 IL1RAPL2Q9NP60 686 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 CCDC87Q9NVE4 849 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 CWC25Q9NXE8 425 aaPredicted RBP23■■□□□ 1.27
CCDC50-202ENST00000392456 MAP3K15Q6ZN16 1313 aa23■■□□□ 1.27
CCDC50-202ENST00000392456 AFDNP55196 1824 aaKnown RBP22.99■■□□□ 1.27
CCDC50-202ENST00000392456 H7C1W4 665 aa22.99■■□□□ 1.27
CCDC50-202ENST00000392456 IL6STP40189 918 aaPredicted RBP22.99■■□□□ 1.27
CCDC50-202ENST00000392456 EIF5P55010 431 aaKnown RBP22.99■■□□□ 1.27
CCDC50-202ENST00000392456 GAS2L3Q86XJ1 694 aa22.99■■□□□ 1.27
CCDC50-202ENST00000392456 ISCA1Q9BUE6 129 aa22.99■■□□□ 1.27
CCDC50-202ENST00000392456 ZNF500O60304 480 aaPredicted RBP22.99■■□□□ 1.27
CCDC50-202ENST00000392456 CGNQ9P2M7 1197 aaKnown RBP22.99■■□□□ 1.27
CCDC50-202ENST00000392456 TSHZ3Q63HK5 1081 aa22.98■■□□□ 1.27
CCDC50-202ENST00000392456 LINC00116Q8NCU8 138 aa22.98■■□□□ 1.27
CCDC50-202ENST00000392456 GPTP24298 496 aa22.98■■□□□ 1.27
CCDC50-202ENST00000392456 BCCIPQ9P287 314 aaKnown RBP eCLIP22.98■■□□□ 1.27
CCDC50-202ENST00000392456 GSPT1P15170 499 aaKnown RBP22.97■■□□□ 1.27
CCDC50-202ENST00000392456 GIGYF2Q6Y7W6 1299 aaKnown RBP22.97■■□□□ 1.27
CCDC50-202ENST00000392456 DZIP3Q86Y13 1208 aaKnown RBP22.97■■□□□ 1.27
CCDC50-202ENST00000392456 CCDC191Q8NCU4 936 aa22.97■■□□□ 1.27
CCDC50-202ENST00000392456 CBX1P83916 185 aa22.97■■□□□ 1.27
CCDC50-202ENST00000392456 SYNE4Q8N205 404 aa22.97■■□□□ 1.27
CCDC50-202ENST00000392456 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms