RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MYO1BO43795 1136 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 UBA7P41226 1012 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 SYNCQ9H7C4 482 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 UTP14AQ9BVJ6 771 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 HMG20BQ9P0W2 317 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 LRPPRCP42704 1394 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 TSPY2A6NKD2 308 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 GJB2P29033 226 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 METAP2P50579 478 aaKnown RBP eCLIP14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 CBX1P83916 185 aa14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 TRMT1Q9NXH9 659 aaKnown RBP14.67□□□□□ -0.06
CCDC88C-204ENST00000389857 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.67□□□□□ -0.062e-6■■■■□ 23.7
CCDC88C-204ENST00000389857 CKAP2LQ8IYA6 745 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 DBF4Q9UBU7 674 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 RASAL2Q9UJF2 1139 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 MPRIPQ6WCQ1 1025 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 TRAF1Q13077 416 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 NSRP1Q9H0G5 558 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 CTAGE1Q96RT6 745 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 IDEP14735 1019 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 NCOA7Q8NI08 942 aa14.66□□□□□ -0.06
CCDC88C-204ENST00000389857 TROQ12816 1431 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 PRPHP41219 470 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 SELENOOQ9BVL4 669 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 DDX46Q7L014 1031 aaKnown RBP14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 C6orf229H3BNL8 230 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 C16orf45Q96MC5 204 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 PPP1R42Q7Z4L9 355 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 CWC25Q9NXE8 425 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 USP16Q9Y5T5 823 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 CCDC102BQ68D86 513 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 RAB3IL1Q8TBN0 382 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 PAXBP1Q9Y5B6 917 aa14.65□□□□□ -0.06
CCDC88C-204ENST00000389857 CRNKL1Q9BZJ0 848 aaKnown RBP14.65□□□□□ -0.07
CCDC88C-204ENST00000389857 ZSCAN16Q9H4T2 348 aaPredicted RBP14.65□□□□□ -0.07
CCDC88C-204ENST00000389857 MCM5P33992 734 aa14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 ST5P78524 1137 aa14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 IQCGQ9H095 443 aaKnown RBP14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 BMP15O95972 392 aa14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 VAT1LQ9HCJ6 419 aa14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 DHX29Q7Z478 1369 aaKnown RBP14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 TRIM47Q96LD4 638 aa14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 STMN4Q9H169 189 aaPredicted RBP14.64□□□□□ -0.07
CCDC88C-204ENST00000389857 UVSSAQ2YD98 709 aa14.63□□□□□ -0.07
CCDC88C-204ENST00000389857 TIAM1Q13009 1591 aa14.63□□□□□ -0.07
CCDC88C-204ENST00000389857 CCDC144CPQ8IYA2 1237 aa14.63□□□□□ -0.07
CCDC88C-204ENST00000389857 CEP135Q66GS9 1140 aa14.63□□□□□ -0.07
CCDC88C-204ENST00000389857 SLC26A6Q9BXS9 759 aa14.63□□□□□ -0.07
CCDC88C-204ENST00000389857 UBE2HP62256 183 aa14.63□□□□□ -0.07
CCDC88C-204ENST00000389857 CAMSAP2Q08AD1 1489 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 IFT140Q96RY7 1462 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 BIN1O00499 593 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 ADCY5O95622 1261 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 NBPF7P0C2Y1 421 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 KRT23Q9C075 422 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 USP25Q9UHP3 1055 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 MRC2Q9UBG0 1479 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 KRT13P13646 458 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 RARSP54136 660 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 BMS1Q14692 1282 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 MAP3K2Q9Y2U5 619 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 NEK1Q96PY6 1258 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 CCDC171Q6TFL3 1326 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 CYLC1P35663 651 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 ZNF354CQ86Y25 554 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 ZGPATQ8N5A5 531 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 KIF14Q15058 1648 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 UQCRFS1P1P0C7P4 283 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 SSH1Q8WYL5 1049 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 ECHDC1Q9NTX5 307 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 STAT6P42226 847 aa14.62□□□□□ -0.07
CCDC88C-204ENST00000389857 TTC21BQ7Z4L5 1316 aa14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 FBF1Q8TES7 1133 aa14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 PUS7Q96PZ0 661 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 MMRN2Q9H8L6 949 aa14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 V9GYY5 206 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 NBPF8Q3BBV2 869 aa14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 ORC3Q9UBD5 711 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 KIF4AO95239 1232 aa14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 EXOC5O00471 708 aa14.61□□□□□ -0.07
CCDC88C-204ENST00000389857 N4BP3O15049 544 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 PHACTR2O75167 634 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 TSPY3P0CV98 308 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 TSPY8P0CW00 308 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 SSFA2P28290 1259 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 MICU3Q86XE3 530 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 PIK3R4Q99570 1358 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 HSPA4P34932 840 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 CA8P35219 290 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 TNPO1Q92973 898 aaKnown RBP14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 MXRA7P84157 204 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 TMTC2Q8N394 836 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 USHBP1Q8N6Y0 703 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 LDHAL6AQ6ZMR3 332 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 CCDC77Q9BR77 488 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 THUMPD2Q9BTF0 503 aaKnown RBP14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 WTAPQ15007 396 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 CNNM2Q9H8M5 875 aa14.6□□□□□ -0.07
CCDC88C-204ENST00000389857 SYKP43405 635 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms