RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ESCO1Q5FWF5 840 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 CBX8Q9HC52 389 aa21.98■■□□□ 1.11
CCDC3-201ENST00000378825 GLRX3O76003 335 aaKnown RBP21.97■■□□□ 1.11
CCDC3-201ENST00000378825 MAP3K11Q16584 847 aa21.97■■□□□ 1.11
CCDC3-201ENST00000378825 DNAAF4Q8WXU2 420 aa21.97■■□□□ 1.11
CCDC3-201ENST00000378825 KCNJ4P48050 445 aa21.96■■□□□ 1.11
CCDC3-201ENST00000378825 NBPF6Q5VWK0 638 aa21.96■■□□□ 1.11
CCDC3-201ENST00000378825 CREB3L3Q68CJ9 461 aa21.96■■□□□ 1.11
CCDC3-201ENST00000378825 NBPF4Q96M43 638 aa21.96■■□□□ 1.11
CCDC3-201ENST00000378825 LRRC37A3O60309 1634 aa21.96■■□□□ 1.11
CCDC3-201ENST00000378825 CCDC171Q6TFL3 1326 aa21.95■■□□□ 1.1
CCDC3-201ENST00000378825 DRC7Q8IY82 874 aa21.95■■□□□ 1.1
CCDC3-201ENST00000378825 ANKRD7Q92527 254 aa21.95■■□□□ 1.1
CCDC3-201ENST00000378825 LRRC59Q96AG4 307 aaKnown RBP21.95■■□□□ 1.1
CCDC3-201ENST00000378825 KRT85P78386 507 aa21.95■■□□□ 1.1
CCDC3-201ENST00000378825 LARP1Q6PKG0 1096 aaKnown RBP21.95■■□□□ 1.1
CCDC3-201ENST00000378825 PXDNLA1KZ92 1463 aa21.95■■□□□ 1.1
CCDC3-201ENST00000378825 HTATSF1O43719 755 aaKnown RBP21.94■■□□□ 1.1
CCDC3-201ENST00000378825 CHAF1AQ13111 956 aaPredicted RBP21.94■■□□□ 1.1
CCDC3-201ENST00000378825 NMIQ13287 307 aaPredicted RBP21.94■■□□□ 1.1
CCDC3-201ENST00000378825 TLR7Q9NYK1 1049 aaKnown RBP21.94■■□□□ 1.1
CCDC3-201ENST00000378825 NWD1Q149M9 1564 aa21.94■■□□□ 1.1
CCDC3-201ENST00000378825 ANKARQ7Z5J8 1434 aa21.94■■□□□ 1.1
CCDC3-201ENST00000378825 PSME1Q06323 249 aa21.94■■□□□ 1.1
CCDC3-201ENST00000378825 CLASRPQ8N2M8 674 aaKnown RBP21.94■■□□□ 1.1
CCDC3-201ENST00000378825 TNMDQ9H2S6 317 aa21.94■■□□□ 1.1
CCDC3-201ENST00000378825 SH2B1Q9NRF2 756 aaPredicted RBP21.94■■□□□ 1.1
CCDC3-201ENST00000378825 ECHDC1Q9NTX5 307 aa21.94■■□□□ 1.1
CCDC3-201ENST00000378825 A0A087WWV3 80 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 NR1I2O75469 434 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 NCBP1Q09161 790 aaKnown RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 CWF19L2Q2TBE0 894 aaKnown RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 LMOD2Q6P5Q4 547 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 AACSQ86V21 672 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 CCDC8Q9H0W5 538 aaPredicted RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 CTIFO43310 598 aaKnown RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 DDX11Q96FC9 970 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 TRIM5Q9C035 493 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 CACNA1FO60840 1977 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 A0A0D9SFI3 127 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 EIF4A1P60842 406 aaKnown RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 UTP14CQ5TAP6 766 aaKnown RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 ZSCAN31Q96LW9 406 aaPredicted RBP21.93■■□□□ 1.1
CCDC3-201ENST00000378825 DNAJC25Q9H1X3 360 aa21.93■■□□□ 1.1
CCDC3-201ENST00000378825 ADCY9O60503 1353 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 SLC27A2O14975 620 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 ARID5BQ14865 1188 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 PROSER3Q2NL68 480 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 CCDC144BQ3MJ40 725 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 CCDC144CPQ8IYA2 1237 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 RUFY2Q8WXA3 655 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 TTC41PQ6P2S7 1318 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 GOLGA6L6A8MZA4 724 aa21.92■■□□□ 1.1
CCDC3-201ENST00000378825 IFIT2P09913 472 aaKnown RBP21.92■■□□□ 1.1
CCDC3-201ENST00000378825 EDC3Q96F86 508 aaKnown RBP21.92■■□□□ 1.1
CCDC3-201ENST00000378825 USP42Q9H9J4 1324 aaKnown RBP21.91■■□□□ 1.1
CCDC3-201ENST00000378825 CHGBP05060 677 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 PGBD1Q96JS3 809 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 TM6SF1Q9BZW5 370 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 JAK2O60674 1132 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 ZKSCAN1P17029 563 aaPredicted RBP21.91■■□□□ 1.1
CCDC3-201ENST00000378825 ANKLE2Q86XL3 938 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 KCNB2Q92953 911 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 SPATA32Q96LK8 384 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 N4BP2Q86UW6 1770 aaPredicted RBP21.91■■□□□ 1.1
CCDC3-201ENST00000378825 CRYBG1Q9Y4K1 1723 aa21.91■■□□□ 1.1
CCDC3-201ENST00000378825 PRAMEF22A3QJZ6 481 aa21.9■■□□□ 1.1
CCDC3-201ENST00000378825 ZSCAN25Q6NSZ9 544 aa21.9■■□□□ 1.1
CCDC3-201ENST00000378825 CACTINQ8WUQ7 758 aaKnown RBP21.9■■□□□ 1.1
CCDC3-201ENST00000378825 MARF1Q9Y4F3 1742 aaKnown RBP21.9■■□□□ 1.1
CCDC3-201ENST00000378825 KLHDC4Q8TBB5 520 aa21.9■■□□□ 1.1
CCDC3-201ENST00000378825 LEO1Q8WVC0 666 aaPredicted RBP21.9■■□□□ 1.1
CCDC3-201ENST00000378825 EAF2Q96CJ1 260 aaPredicted RBP21.9■■□□□ 1.1
CCDC3-201ENST00000378825 BOLA2Q9H3K6 86 aa21.9■■□□□ 1.1
CCDC3-201ENST00000378825 ZNF75DP51815 510 aa21.89■■□□□ 1.1
CCDC3-201ENST00000378825 TOB2Q14106 344 aaPredicted RBP21.89■■□□□ 1.1
CCDC3-201ENST00000378825 ZNF589Q86UQ0 364 aaPredicted RBP21.89■■□□□ 1.1
CCDC3-201ENST00000378825 IP6K1Q92551 441 aa21.89■■□□□ 1.1
CCDC3-201ENST00000378825 SIL1Q9H173 461 aa21.89■■□□□ 1.1
CCDC3-201ENST00000378825 MPRIPQ6WCQ1 1025 aa21.89■■□□□ 1.09
CCDC3-201ENST00000378825 MAP4K1Q92918 833 aa21.89■■□□□ 1.09
CCDC3-201ENST00000378825 ORAI2Q96SN7 254 aa21.89■■□□□ 1.09
CCDC3-201ENST00000378825 GOLGA6L4A6NEF3 574 aa21.88■■□□□ 1.09
CCDC3-201ENST00000378825 CEBPZQ03701 1054 aaKnown RBP21.88■■□□□ 1.09
CCDC3-201ENST00000378825 SASH1O94885 1247 aa21.88■■□□□ 1.09
CCDC3-201ENST00000378825 TNNT1P13805 278 aa21.88■■□□□ 1.09
CCDC3-201ENST00000378825 FOSBP53539 338 aa21.88■■□□□ 1.09
CCDC3-201ENST00000378825 C9orf78Q9NZ63 289 aaPredicted RBP21.88■■□□□ 1.09
CCDC3-201ENST00000378825 MAP3K2Q9Y2U5 619 aa21.88■■□□□ 1.09
CCDC3-201ENST00000378825 NDUFB9Q9Y6M9 179 aa21.88■■□□□ 1.09
CCDC3-201ENST00000378825 PPFIA3O75145 1194 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 USP27XA6NNY8 438 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 TPM3P06753 285 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 ZNF165P49910 485 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 PLA2G4DQ86XP0 818 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 ZNF592Q92610 1267 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 EVI5LQ96CN4 794 aa21.87■■□□□ 1.09
CCDC3-201ENST00000378825 HSP90AB4PQ58FF6 505 aa21.86■■□□□ 1.09
CCDC3-201ENST00000378825 BICD2Q8TD16 824 aa21.86■■□□□ 1.09
CCDC3-201ENST00000378825 FTOQ9C0B1 505 aaKnown RBP eCLIP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms